GenomeNet

Database: Pfam
Entry: RE_XamI
LinkDB: RE_XamI
Original site: RE_XamI 
#=GF ID   RE_XamI
#=GF AC   PF09572.7
#=GF DE   XamI restriction endonuclease
#=GF AU   Coggill P
#=GF SE   Bateman A
#=GF GA   25.00 25.00;
#=GF TC   55.20 54.70;
#=GF NC   23.20 19.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   415144
#=GF RT   A new restriction endonuclease from Streptomyces albus G. 
#=GF RA   Arrand JR, Myers PA, Roberts RJ; 
#=GF RL   J Mol Biol. 1978;118:127-135.
#=GF RN   [2]
#=GF RM   22638584
#=GF RT   Sequence, structure and functional diversity of PD-(D/E)XK
#=GF RT   phosphodiesterase superfamily.
#=GF RA   Steczkiewicz K, Muszewska A, Knizewski L, Rychlewski L, Ginalski
#=GF RA   K;
#=GF RL   Nucleic Acids Res. 2012;40:7016-7045.
#=GF DR   INTERPRO; IPR019072;
#=GF CC   This family includes the XamI (recognises GTCGAC but cleavage
#=GF CC   site unknown) restriction endonuclease.
#=GF SQ   15
#=GS U5QC54_9CYAN/53-306      AC U5QC54.1
#=GS W8X8B5_CASDE/1-199       AC W8X8B5.1
#=GS K9W514_9CYAN/53-308      AC K9W514.1
#=GS W5TLJ5_9NOCA/56-291      AC W5TLJ5.1
#=GS A0A0D5LT20_9RHIZ/61-291  AC A0A0D5LT20.1
#=GS A5USP4_ROSS1/56-179      AC A5USP4.1
#=GS D2UFF2_XANAP/54-290      AC D2UFF2.1
#=GS E5AMB6_BURRH/54-290      AC E5AMB6.1
#=GS E4NPA7_HALBP/50-271      AC E4NPA7.1
#=GS K9U9Q7_9CYAN/53-309      AC K9U9Q7.1
#=GS A0A073CCG9_PLAAG/62-317  AC A0A073CCG9.1
#=GS A1BGJ7_CHLPD/15-270      AC A1BGJ7.1
#=GS K9T9V4_9CYAN/53-309      AC K9T9V4.1
#=GS U1YI14_9BURK/53-311      AC U1YI14.1
#=GS D4JUQ2_9FIRM/53-309      AC D4JUQ2.1
U5QC54_9CYAN/53-306                 ...........ENLT..DIKPSTI.RNSPAILP.TLRMSTCPPLAVDRLIGLARVSPGLVKTME..QGKRLPPQMNVAQADTELARVADVIERLADPDIFVWIGRPAPATTQEIHRAAIIVADRLCGAV.TNPIIRNAQEAR......QLAAIKAWLEARGYTPAPNG.I--RFNTM..QPGTFSFRMNVPVT...QSGRVqsINIPIDAVIMPRTAAPGSLPIFFEAKSAGDFTNTNKRRKEEAVKMAQLRTT.HGL..GVQF.NLFLCGYFDSGYLGYEAA.EGIDWVW.......
W8X8B5_CASDE/1-199                  ..........m----..-------.--------.------------------------------..---------SSVKADQELEKIAAVIERLADPDIFVWLNRAASATKAEIHRAATIIADRLCGAV.TNPIIRNAQEQR......QLAVIQAYLEQRGYRRLHPG.DGIKFNSM..PSGTFSFRMNVPIK..qTNGVQ.sINIPIDAVIMPKAAKRGDLPLFFEAKSAGDFTNTNKRRKEEAVKMAQLRHT.YGP..NVRF.NLFLCGYFDSGYLGYEAA.EGIDWAW.......
K9W514_9CYAN/53-308                 ..........t-NLT..NITPDVL.RQHPSVLP.ILRMAAAPPIARDRLIGLAGVSPNLVKNME..EQQRLPPRMNSATLDAELMKISQIIMRLTDKDIFSWLDTRQPPTDAEVHRAATIVADRLCGAV.SDPIIRNAQERR......QLATIRQWLEQRGYSYIGAG.TGLSFERI..QPGTFAFRLNIPVL..lQGGSK.qVNIPIDVVVMPLQSNFGQLPLLIEAKSAGDYTNPNKRRKEEAIKIAQLKSN.YGD..NVRF.ILFLCGYFDSGYLGYEAA.EGIDWLW.......
W5TLJ5_9NOCA/56-291                 .......vdls-QLA..DQASDLL.TQSEDTLT.TIRYLASPPISADDLKELAE------TTLS..-RSRLIAEGGV-----AARRVIETVLLGLDRNRFPWIGEDREPTDAERN-AAVISTAALIAT-.----QKVQTARRneakdeQESLAASYLVSQGFRQVPTR.KIV--SVM.dMPQPGEFCRESMF-...--GDR..---KADLVVRVWDGR----IMPIECKVSNSSTNSVKRLNNDAAVKAKAWIEqFGN..RTTIpAALLSGVFKVHNLESAQT.AGLTIIW.......
A0A0D5LT20_9RHIZ/61-291             vdasviadlmr----..-------.--NDDSRR.AFCYLTAPPISEDDLKTLVE------ASIA..-PTRLEEHPDS------AEKLRGIIFRILDPHRFPWVKEGRDPDPHERS-AAIIASAALVSAKkVETFRRNDAKDR......QEEKVKELLRSLGYTEIPKR.DIL-NASA..APAVGEFMGETPL-...-AGAK..----ADVVATVPSGR----IMAIECKVSNSKVNSYKRIVHDTGGKATIWHDqLGR..ANVLaSAVLSGVFSVSNCETVQNdKGVYLFW.......
A5USP4_ROSS1/56-179                 ..........d-DLR..RLDVTTL.RSNPGILP.TLRMCTAPPLAVDRLVGLAGVSKNLIERME..-QGNLPGKTTSADLDRALTKICDILSQLLDRDIFPWLVNGTALDDRERDRSATIIADRLCSAV.ANPIIRNAQEQ-......--------------------.--------..--------------...-----..---------------------------------------------------.---..----.------------------.-------lg.....
D2UFF2_XANAP/54-290                 .........sd--LNpgAITDDNLaEAYGLGLGeALRYLAGPPISDDDLQVIAD-----VESIA..-PGVLKKNSEA------LRKVFEVIERVIDPHRFPWMEAGGAPTDQQRE-AALLASSVLLAA-.----QRIATERRnegkqnQETTVKDYLRSLGFTEAPAV.A---INTIvkGPQAMQFCAECQL-...--GER..---KADVVVRLHDTR----LMAIECKVSNSATNSVKRLNNDAAVKAEYWIKqFGT..AQVVpAAALAGVFKVLNLEQAQT.RGLSLFW.......
E5AMB6_BURRH/54-290                 .........sd--LNpgAITDDNLaEAYNLGLGeALRYLAGPPISDDDLQVIAD-----VDSIA..-PGVLKKNPEA------LRKVFKVIERVIDLHRFPWIEAGGAPTEQQRE-AALLASSVLLAA-.----QRIATERRnegkenQETKVKDYLRSLGFTEAPAV.A---INTIvkGPQAMQFCAECQL-...--GER..---KADVVVRLHDTR----LMAIECKVSNSATNSVKRLNNDAAVKAEYWIKqFGI..AQVVpAAALAGVFKVLNLEQAQA.RGLSLFW.......
E4NPA7_HALBP/50-271                 ..........n-NFR..DIEKEDI.REDPRIVR.ILRYLVKPKISQMKFGQFAGVNS--TNNYE..-EYTLAEASTP--NHQIAQDLADFTAANLDPEKVPWLSDPTIDEEEEIEYSRRWICDKIAEQE.ATTHYRNWRKDK......QEQTVAEMLDDAGYTDSGYSgKISSTNDI..PVGT--YAEESKV-...-AGAD..V-QKADFIVRPTEDT----VIFIEAKAIGVRVDSHKRVKEIRNKASDWKDE.FEG..AET-.------------------.-------vaviegw
K9U9Q7_9CYAN/53-309                 ...........NNLK..NLQPEIL.RQNPSILP.TLRMCTCPPIARDRLIGLAGVAKSVVERME..VEGKLPVRLTGDRLDEQLRKITNIVSRLADRDIFTWLDTEQKPTESEIYRAATIVADRLCGSS.ADPIVRNAQEAR......QLREIAAWLNRRGYRLLPAD.RRVRFDEM..LPGTYSFRLNIPVNlssEDGKT..VNIPVDAVIMRNTARRGDRPLLVEAKSAGDFTNVNKRRKEEARKIQQLQAT.YGN..TIEF.VLFLCGYFDSGYLGYEAA.EGIDWVW.......
A0A073CCG9_PLAAG/62-317             ..........a-NIT..NITPAIL.QQYPSVLP.ILRMATAPPIARDRLIGLAGVSSNLVKNME..EKERIPPRIDRGTLDTELAKIGKIIARLVDKDIFSWLDTGRQPTDTEVHRAAIIIADRLCGAI.SDPIIRNAQERR......QLATIRQWLEQHGYSYIGGG.TRLSFERM..LPGTFSFRLNIPIL..lQGGTK.qINIPIDIVIKPIQSSPSQLPLLIEAKSAGDYTNPNKRRKEEAVKMAQLRNN.YGE..NVRF.ILFLCGYFDSGYLGYEAA.EGIDWVW.......
A1BGJ7_CHLPD/15-270                 ..........g-NMT..AVTPAVI.CDHPDILP.TLRMSTCPPLAVDRLIGLSGVSSNLVKSLE..LRKKLPSKMNSGLLDEDLHRIAAIIVKMADPDIFVWLGRKTQPDNDEIHRAATIVADRLCGAV.ANPIIRNAQEKR......QLAAIKSWLEARGYRQLQNG.EAVRFDSM..PPGTFTFRMNVPVD..lEGGVK.rVNIPVDAVVMPGKSKKGALPVFFEAKSTGDFTNTNKRRKEEAMKMSQLRST.YGR..NVRF.NLFLCGYFDSGYLGYEAA.EGIDWVW.......
K9T9V4_9CYAN/53-309                 ...........NNLK..TLHPEIL.RQNPGILP.TLRMCTCPPIARDRLIGLANVAKSVVDCME..VLGKLPVRLTEARLDEELRKITDIVARLADRDIFPWLDSNQTPLESEIYRAATIVADRLCGSS.ADPIVRNAQEAR......QLREIAAWLDSRGYRLLPAS.QRVKFDEM..PPGTYSFRLNIPVNlaeEGGKT..VNIPVDAVIMRKAAQPGDRPLLVEAKSAGDFTNVNKRRKEEARKVQQLNAT.YGN..TIEF.VLFLCGYFDSGYLGYEAA.EGIDWVW.......
U1YI14_9BURK/53-311                 ...........ENLT..NIRPEIL.RKWPGVLP.TLRMSTCPPLAVDRLIGLAGVSSSMVKRME..KEKQLPVRMAAANIDHELVKIAAVIERLADPDIFVWIKRSDPATEAEIHRAATIVADRLCGSV.ANPIIRNAQEQR......QLAYIGQWLEARGYTKLPDR.SNVTFDTM..PPGTYSFRMNVPVAk.gVGGDE.sINIPVDAVVMRKTAAKGDYPLLIEAKSAGDFTNTNKRRKEEAQKVNQLRAT.YGHirPIEF.ILFLCGYFDSGYLGYEAA.EGIDWVW.......
D4JUQ2_9FIRM/53-309                 ...........NYLN..NVSPAIL.IEHPEVLP.ILRMSTCPPIARDRLVGLAGVSKSLVQNMEdsENPHISPRMQRAKLIEELQSISDIIIKMADPDIFTWLSERRNPDETEIMRSSTIVADRLCGAV.ADPIIRNAQEKR......QLAAITTLLESKGYTLAESG.V--HYDEM..KPGSFSFHTNVPVYvagEQGDQ..VNIPVDVAILPLTANTGDMPLLLEAKSAGDFTNVNKRRKEEAVKMQQLRNT.YGV..DVSY.SLFLCGYFDSGYLGYEAA.EGIDWIW.......
#=GC seq_cons                       ..........t.sLs..slpsshL.cppPslLP.sLRMsTsPPIApDRLlGLAsVu.shVcshE...pt+Lss+hsusphDppLpKIsclItRlsD.DIFsWLspspsPT-sElcRAAsIlADRLCGAs.usPIlRNAQEcR......QLstIpsaL-u+GYo.lsss.phlpassM...PGTasF+hNlPl.....sGsc..lNIPlDsVlhstsup.uthPlhlEAKSuGDaTNoNKRRKEEAsKhuQLpss.aGp..slpa.sLFLCGYFDSGYLGYEAA.EGIDWlW.......
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