GenomeNet

Database: Pfam
Entry: RdRP_1
LinkDB: RdRP_1
Original site: RdRP_1 
#=GF ID   RdRP_1
#=GF AC   PF00680.17
#=GF DE   RNA dependent RNA polymerase
#=GF AU   Bateman A
#=GF SE   Pfam-B_32 (release 2.1)
#=GF GA   19.70 19.70;
#=GF TC   19.70 20.10;
#=GF NC   19.60 19.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   RNA-dependent_RNA_polymerase
#=GF DR   INTERPRO; IPR001205;
#=GF DR   SCOP; 1rdr; fa;
#=GF SQ   65
#=GS POL1_SDVS5/1437-1940        AC Q9WAL8.1
#=GS RDRP_BPPH6/19-638           AC P11124.3
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8S B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8O B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HHT P; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8O C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVL C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JLF B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8Y C; 18-630;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8W C; 18-630;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8M P; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8K B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8S A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI8 B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1WAC B; 18-635;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JLG A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8Y A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HHT R; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JLG B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVM C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI0 P; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVK C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8Q C; 18-630;
#=GS RDRP_BPPH6/19-638           DR PDB; 1WAC A; 18-635;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI0 R; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8F A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HHT Q; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4B02 B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVL E; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8W B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4B02 C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVK A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8K A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVM B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1WAC C; 18-635;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8Q A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JLF A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVN C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JL9 C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JL9 B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8Q B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8S C; 18-630;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HHS A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JLG C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JL9 A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVI B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVI A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8F B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVN A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVI C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI1 A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI1 C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HHS B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8M R; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8F C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JLF C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI8 A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI0 Q; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVJ A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8W A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8O A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVJ B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVJ C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8K C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8M Q; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8Y B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HHS C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVM A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVK E; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI1 B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVN E; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4B02 A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVL A; 18-637;
#=GS POL1_CPMVS/1186-1687        AC P03600.1
#=GS POLG_BVY3/2632-3075         AC A0AUJ5.1
#=GS POLG_RGMVD/2263-2726        AC O11436.1
#=GS A8D7N3_AQUAV/1584-2006      AC A8D7N3.1
#=GS X2L6K2_MOVA2/2087-2547      AC X2L6K2.1
#=GS POLG_POL1M/1765-2208        AC P03300.3
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLQ A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLS A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4V A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4W E; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 1RDR A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4S E; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLY A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4R0E A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 3OL7 E; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4T E; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLV A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4T A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 1RA7 A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 3OL7 A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLW A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4U A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLX A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4W A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4S A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 3OL7 I; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLR A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4U E; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLO A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4V E; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 1TQL A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 3OL7 M; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLP A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 1RA6 A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 1RAJ A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLT A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLU A; 17-460;
#=GS POL1_TOTV/1134-1642         AC A1XIP9.1
#=GS POLG_VESVA/1377-1852        AC Q9DUN3.1
#=GS B8XTP8_COSAA/1673-2117      AC B8XTP8.1
#=GS POL1_BBWVS/1175-1673        AC Q76L40.1
#=GS POLG_BSTV1/2291-2733        AC Q65730.1
#=GS POL1_TORVR/1523-2014        AC P29150.2
#=GS D9YV24_PASVA/1966-2425      AC D9YV24.1
#=GS POL1_CRLVP/1574-2081        AC Q6EWG9.1
#=GS M4PJD6_AVISV/1722-2154      AC M4PJD6.1
#=GS RPOA_EAVBU/2108-2368        AC P19811.3
#=GS POLG_AEVCA/1662-2124        AC Q9YLS4.1
#=GS POLG_PVYN/2293-2763         AC P18247.2
#=GS Q2HWK3_RSET1/1157-1599      AC Q2HWK3.1
#=GS POLG_BECN1/1159-1638        AC Q288N7.1
#=GS POLG_NVN68/1300-1767        AC Q83883.1
#=GS R1AB_BRV1/4879-5187         AC P0C6V8.1
#=GS POLG_HAVHM/1750-2215        AC P08617.1
#=GS Q7T7T5_HARNA/1275-1680      AC Q7T7T5.1
#=GS NS1AB_TASV1/1260-1545       AC Q9JH69.3
#=GS POLG_PYFV1/2270-2778        AC Q05057.1
#=GS Q66776_ERBV1/2133-2571      AC Q66776.1
#=GS D9YV26_OSCV1/1798-2252      AC D9YV26.1
#=GS POLG_SVSAP/1226-1696        AC Q672I1.1
#=GS H6VBU5_CADIV/936-1394       AC H6VBU5.1
#=GS POLG_HPE2W/1722-2163        AC O73556.1
#=GS Q9WJ28_PTV1F/1795-2234      AC Q9WJ28.1
#=GS RDRP_HPBVH/194-421          AC Q50LE4.1
#=GS POLG_FCVUR/1263-1737        AC Q66914.1
#=GS C5MSH2_SALVA/1914-2363      AC C5MSH2.2
#=GS Q9DLK1_FMDVP/1865-2317      AC Q9DLK1.1
#=GS RDRP_CPVKS/22-375           AC O15925.1
#=GS Q8JJT0_PSV13/1874-2321      AC Q8JJT0.1
#=GS Q33DY4_AURN1/1024-1531      AC Q33DY4.1
#=GS RDRP_NODAM/531-717          AC Q9IMM4.1
#=GS Q0ZQM1_DHAV/1810-2228       AC Q0ZQM1.1
#=GS F4YYF3_HUNVO/1808-2238      AC F4YYF3.1
#=GS POLG_RHDVF/1279-1750        AC P27410.1
#=GS POLG_RHDVF/1279-1750        DR PDB; 1KHW B; 28-499;
#=GS POLG_RHDVF/1279-1750        DR PDB; 1KHW A; 28-499;
#=GS POLG_RHDVF/1279-1750        DR PDB; 1KHV A; 28-499;
#=GS POLG_RHDVF/1279-1750        DR PDB; 1KHV B; 28-499;
#=GS O70710_IFVS/2465-2952       AC O70710.1
#=GS A0A023T7J3_ROSV2/1995-2452  AC A0A023T7J3.1
#=GS POLN_CRPVC/1252-1761        AC Q9IJX4.1
#=GS I3VR62_MISV1/1826-2277      AC I3VR62.1
#=GS POLN_ABPVR/1406-1898        AC Q9DSN9.1
#=GS Q155Z9_SVV1/1731-2179       AC Q155Z9.1
#=GS R1AB_IBVB/4438-4717         AC P0C6Y1.1
#=GS POLG_RTSVA/2907-3417        AC Q83034.1
#=GS POL1_BAYMY/1633-2105        AC Q9YJW3.1
#=GS NS1AB_HASV1/1068-1326       AC Q67726.1
#=GS POLG_SPMMV/2668-3129        AC P89201.1
#=GS I6YQK4_PASI1/1692-2128      AC I6YQK4.1
#=GS I7C489_GALIV/2009-2471      AC I7C489.1
#=GS POLG_HRV8A/1721-2163        AC P07210.3
#=GS Q9WPZ7_GAVAU/4727-4980      AC Q9WPZ7.3
#=GS POLG_EMCVR/1844-2290        AC Q66765.1
#=GS E9L812_MEGR1/2353-2811      AC E9L812.1
#=GS R1AB_CVMA5/4977-5237        AC P0C6X9.1
#=GS B6VDX7_THCOV/4095-4376      AC B6VDX7.1
#=GS A0A0B2UTK5_TOXCA/161-386    AC A0A0B2UTK5.1
POL1_SDVS5/1437-1940                   .....................................................................................pral----RKTSIVPSIIHDNLWRKPE.....TEPTILGKIDDRSP-FP.......---YDPYATIGEKFVQEvgpIDLS..V..GSDASLVVANIGSSW.KAVGK..PQC.PTVL.....TWEV.AINGDAAi...pyCERLP.......LSTSEGYPDSIQrn.fgeKGKKRFFDLKGENV........................................RVPTPALMEELEV.LERE.LQkeevcLTCINTACAKDEKTAPKKV.......rVQPKTRIFEILPFQINIIIRRYLMFWMQLLMVA..HDELPSKVGINVYSES.WDRLLGRHTR...LAN..HFTGDYSGFDTSTPRVLVYAI....IDKINE..LA..dDGE.VN.Q.RTRRN...........II......RFVLN...RYL....ISD.GVLY...........................EIHGGTPSGFAPTVMINSVVNE...FYL.K.WSWIG.LLKEAGYANQat............................lyAFHEAT.EISL..YGDDNFVSVATPVASV...yNLTTISN.........................FLGR..IGVKLGD..GAKTGT..IKP...FIPLEEVDFLK..RQF..VADSGSt...........aILCPLKKISIEERLFYV.RGG.QDEI...........-AALELNIATALCEAFFH...GKEYF.S...FLEGKIIEAMRKSGVALSRp.......lPTMESVRA-----wymsq.......................................................................................................
#=GR POL1_SDVS5/1437-1940        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
RDRP_BPPH6/19-638                      ......................................................................................fan-NIKAQQASKRSFKEGAIETYEGl..lsVDPRFLSFKN-ELSRYLtdhfpanVDEYGRVYGNGVRTNFF...GMRH..M..NGFPMIPATWPLASN.LKKRA..DAD.LADG.....PVSE.RDNLLFRaavrlmFSDLEpvplkirKGSSTCIPYFSNdmgtkiEIAERALEKAEEAGnlmlqgkfddayqlhqmggayyvvyraqstdaitldpktgKFVSKDRMVADFE.YAVT.GG.....EQGSLFAASKDASRLKEQYgidvpdgfFCERRRTAMGGPFALNAPIMAVAQPVRNKIYSK.yAYTFHHTTRLNKEEKV.KE--------...WSL..CVATDVSDHDTFWPGWLRDLIc..dELLNMG..YA..pWWV.KL.F.ETSLK...........LP......VYVGA...PAP....EQG.HTLLgdp.....................snpDLEVGLSSGQGATDLMGTLLMS...ITY.L.VMQLD.HTAPHLNSRIkdmpsac..................rfldsywQGHEEI.RQIS..KSDDAILGWTKGRALVgghrLFEMLKEgkvnpsp...........ymkisyeHGGA.fLGDILLY..-DSRRE.pGSA...IFVGNINSMLN..NQF..SPEYGVq..........sgVRDRSKRKRPFPGLAWA.SMK.DTYGacpi...ysdvLEAIERCWWNAFGESYRAy.rEDMLK.RdtlELSRYVASMARQAGLAELTpidlevladPNKLQYKWTEADV............................................................................................................
#=GR RDRP_BPPH6/19-638           SS    ......................................................................................B-H-HHHHTT--SS-SSHHHHHHHHHH..HHHSS-----EE-ETT----TTT----HHHHHHHHHHHHHHHH...HHHH..-..HHHHHH--SS-EEEE.EEEST..EEE.TTTT.....--EE.-HHHHHTTTSSS-EEE-B-BSTHHHHHH-----TT-EEEEEEEEEE--HHHHHHHHHHHHHHHHHHHHTTHHHH---SHHHHHHHHHT-SEEEEEEESSHHHHS-HHHHH.HHHH.HH.....HHHHHHHHHTT--EEE--SSTTB--EEES-TTS---B-SS-TTSTTHHHHHHHHHHHHHH.HHHHHT-GGGGGG-SSH.HH--------...SSE..EEETTEEEEEE-SSTHHHHHHH..HHHHHTS..S-..S-EE.-S.-.ETTEE...........-E......HHHHH...-SS....T-S.GGGSSSS.....................HHHHHHHHHHHHHSS-HHHHHHHHH...HHH.H.TSSSS.TTSTSTTS-HHHHHHHH..................XXXXXXXXXXXXX.XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXX.XXXXXXXX..-XXXXX.XXXX...XXXXXXXXXXX..XXX..XXXXXXX..........XXXXXXXXXXXXXXXXXXX.XXX.XXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............................................................................................................
#=GR RDRP_BPPH6/19-638           pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POL1_CPMVS/1186-1687                   ........................................................................................i-PLPTKTALVETPSEWHLDTPCD.....KVPSILVPTDPRIPAQHegy.dpaKSGVSKYSQPMSALDPE...LLGE..V..ANDVLELWHDCAVD-.-----..WDD.FGEV.....SLEE.ALNGCEGv...eyMERIP.......LATSEGFPHILSrn.gkeKGKRRFVQGDDCVVsl....................................ipGTTVAKAYEELEA.SAHR.FV.....PALVGIECPKDEKLPMRKV.......fDKPKTRCFTILPMEYNLVVRRKFLNFVRFIMAN..RHRLSCQVGINPYSME.WSRLAARMKE..kGND..VLCCDYSSFDGLLSKQVMDVI....ASMINE..LC..gGED.QL.K.NARRN...........LL......MACCS...RLA....ICK.NTVW...........................RVECGIPSGFPMTVIVNSIFNE...ILI.R.YHYKK.LMREQQAPELm.............................vqSFDKLI.GLVT..YGDDNLISVNAVVTPY...fDGKKLKQ.........................SLAQ..GGVTITD.gKDKTSL..ELP...FRRLEECDFLK..RTF.vQRSSTI.............WDAPEDKASLWSQLHYV.NCN.NCEK...........EVAYLTNVVNVLRELYMH...SPREA.T...EFRRKVLKKVSWITSGDL-.........PTLAQLQEFYEYQ............................................................................................................
#=GR POL1_CPMVS/1186-1687        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_BVY3/2632-3075                    ......................................................................ntrhtyegesqpfmaylre-----------------------.....-CGDAETFFRPLLSHYI.......PSNLNGDAFKKDFFKYG...KPVP..V..GLVHGPSFKIASDRV.IKRFErvGYE.RHSI.....PFEF.DAEAI--......RDDLN.......KHAAMGAQYV--......-GKKEQHLDGISEE........................................QFCDEFVASCCRL.ANNC.DG.....---VWKGSLKAELRSKEKV........QENKTRVFTSAPYDVLLGGKACVMHFNKKFYAN..NTKGPWTVGINKLGLG.WHRLLKSLPE...GFV..YGTGDGSQFDSSLTPLLINEV....CRIRMY..FMq.dDEL.GQ.A.MLRGL...........YR......QIIWT...LIS....MPD.GSVV...........................RKAKGNPSGQPSTVDDNTIMVM...LAV.E.YVFAY.LGITQEEMD-................................---TIF.KYYA..NGDDLIFAIHPDRESI....-LNEFTH.........................LFAH..LGLNYIF..EDRTRN..---...---RAELEYMS..LTG..IEREGF.............YIPKLSRERISSIVQWR.RKG.DTRA...........----MFDALNAAI--LESw.gYDDLT.Y...WLRKYYEWL----------.........-------------iinrydidl...................................................................................................
#=GR POLG_BVY3/2632-3075         pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_RGMVD/2263-2726                   .......................................................................................gn-------LITKHVIKGKSPTFDLf..lsVDAQASDFFKPLMGDYA.......PSRLNREAFVKDITKYD...TEIP..I..GNLSITDFENAVEDT.YYILK..DSG.IEQC.....NYIT.DAIPI--......FDSMN.......MKAATGALY---......GGKKKDYFENYTDD........................................---MKQNILKESY.IRLR.EG.....KMGIWNGSLKAELRSKEKV........EANKTRVFTAAPLDTLLAGKGCVDDFNNQFYAA..HLKGPWTVGITKFFGR.WNDFLSELPP...GWD..YFDADGSRFDSSLTPFLLNAV....LNIRKK..FMi.nWAF.GQ.R.CLGNL...........YT......EIIYT...PIA....TPD.GSVV...........................KKMRGNNSGQPSTVVDNTIMVI...IAM.Q.YAISK.AEFPAGRLR-................................---DQI.RYFA..NGDDLVVAVEPSLSDK....-ISSFSA.........................SFAE..LGLSYDF..SNKVND..---...---RSELQFMS..HTG..KLIDGM.............YIPMLERERICAILEWS.RSD.EPQF...........------QLDAISAAMIEAw.gDDELL.Y...QIRRYYSWLLEQEPYKSIAel....ghaPYLAEAA------lkalyt......................................................................................................
#=GR POLG_RGMVD/2263-2726        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
A8D7N3_AQUAV/1584-2006                 ....................................................................................lhrsi-----RTKFRPTDLQNKIVPE--.....LEPAVLSASDPRLKVQI.......-----DGDLPDHLCK-K...WKVN..T..KVSRPDVLELVVNEY.ISSLD..CEQ.FEPV.....TLNE.AINSS--......ESPLN.......FNGTAGAKYP--......GMNRRQLLLPLNPQ........................................--VRDDVVKLAGD.VGNG.TA.....-TVVFETFMKDELRPKEKI........ESGKTRIVESCPLDYLLLYRMVMLKSMIWWYNS.dCIKTGVAPGMNVYT--.--DFVPMVKQ..fKKI..KYCLDFSAYDSTLSDEILAAG...vEVLACT..S-...---.AV.P.SYVRK...........LH......APIIC...SHH....WHN.NVVD...........................LVLGGMPSGAPCTSVLNSIVNV...LMA.R.YIC--.ALMDIDYPV-................................------.-MVA..YGDDNVVSFDEEIDIE....---RMVS.........................LYKT.eFGVTATN..HDKTPV..---...PRPMANPVFLK..RRLrfNPDLNI.............QFPVLPLGEMIDRMCWT.RGP.EHLS...........-----DQTFSFAIELAGY...GKQVY.T...HI-----------------.........-------------rdaffpymi...................................................................................................
#=GR A8D7N3_AQUAV/1584-2006      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
X2L6K2_MOVA2/2087-2547                 ........................................................................................v-AVNRKTQIKKSPLFDVFKPE--.....AGTAVLSQYDRRLADGV.......--VLDEALFEKHVSD--...-MEK..L..PKEFEIACDMYANEL.FSKI-..GTN.NGVV.....SMYR.AMNG-DG.....iSEAMD.......MSKAVGYPYCLE......SIHRVDLIETKETPeg....................................kvYFPTKRLEEETRK.FFYG.EE.....-KPKFVTFLKDEVRSNEKI........KQGKTRIVDASPFPYAIAGRMVMQNFMSNMMAH.nGIETGSAVGCDP-DVA.WTRYFFELTD...-RY..VFDLDYKAFDSTHPTAIFNLL....A---DR..FF..lPKYgFD.Q.EAVRI...........FL......NGLSD...SDH....VYE.SKHF...........................RIRGGLPSGCPCTSILNTVINN...IIV.R.AAMLG.AYQVDTIDF-................................---QNF.KMLA..YGDDVVYSTPQPIKPK....---DLAD.........................WLHS.nTNYKVTP..ASKAGE..FPD...ESTIWDVTFLK..RAF..IPDENHg..........qlIKPVMSMSNLKQMLSFM.RPG.TFPD...........------KVRSVAGLAVHC...SEEDY.N...ELADAIESTVP--------.........-------------gvampaysymkacwya............................................................................................
#=GR X2L6K2_MOVA2/2087-2547      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_POL1M/1765-2208                   ........................................................................................i-NAPSKTKLEPSAFHYVFEGV--.....KEPAVLTKNDPRLKTDF.......----EEAIFSKYVGN--...KITE..V..DEYMKEAVDHYAGQL.MSL--..DIN.TEQM.....CLED.AMYGTDG......LEALD.......LSTSAGYPYVAM......GKKKRDILNKQTRD........................................---TKEMQKLLDT.Y---.-G.....INLPLVTYVKDELRSKTKV........EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKN.pGVITGSAVGCDP-DLF.WSKIPVLMEE...--K..LFAFDYTGYDASLSPAWFEAL....KMVLEK..IG...---.--.F.GDRVD...........YI......DYLNH...SHH....LYK.NKTY...........................CVKGGMPSGCSGTSIFNSMINN...LII.R.TLLLK.TYKGIDLDH-................................-----L.KMIA..YGDDVIASYPHEVDAS....---LLAQ.........................SGKD..YGLTMTP..ADKSAT..FET...VTW-ENVTFLK..RFF..RADEKYp..........flIHPVMPMKEIHESIRWT.KDP.RNTQ...........-----DHVRSLCLLAWHN...GEEEY.N...KFLAKIRSVPIGR--ALLL.........PEYSTLYRRWLD-s...........................................................................................................
#=GR POLG_POL1M/1765-2208        SS    ........................................................................................T-BE---TTS---TTGGGTT----.....TTT--HHHHHHHHHH-S.......----EEEHHHHHTT---...E--H..H..HHHHHHHHHHHHHH-.BTT--..TT-.HHHH.....HHS-.EEEEEEE......--HHH.......HHHTTTGGGGHH......EEEEETTEEEEEES........................................---TEEEEEESS-.----.-H.....T-EEEEGGG-SS---B-TT........EEE-SSSTTSEEEE--HHHHHHHHTEESSGGGH.HHHHHHHHHHGGG-HHH.HHHHHHHTTS...--S..--HHHHHHHHHHTXXXXXXXX....XXXXXX..XX...---.--.X.XXXXX...........XX......XXXXX...XXX....XXX.XXXX...........................XXXXXXXXXXXXXXXXXXXXXX...XXX.X.XXXXX.XXXXXXXXX-................................-----X.XXXX..XXXXXXXXXXXXXXXX....---XXXX.........................XXXX..XXXXXXX..XXXXXX..XXX...XXX-XXXXXXX..XXX..XXXXXXX..........XXXXXXXXXXXXXXXXXXX.XXX.XXXX...........-----XXXXXXXXXXXXX...XXXXX.X...XXXXXXXXXXXXX--XXXX.........XXXXXXXXXXXX-X...........................................................................................................
#=GR POLG_POL1M/1765-2208        AS    ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POL1_TOTV/1134-1642                    tvphkttlrrsglfeafgpaetapsiisasdkrgegfdpyvagiqkynetaqnfdediarlayeglrqailpvlhsqrvpfgkpvtqne-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....--DV.VLNGVDGf...dyFDGME.......LSTSCGYPYN-Kl...gmGTSKREFVEPSGDGdrvq................................lkrtTPIFDDWEALDVE.IRKG.NF.....VELVTTQCAKDERLPLEKV.......fGKRKTRLFEILPFHYNMLVRKYFLDFSASLMAS..HNALPCKVGINPGGIE.WTLLANGFRA..vSDT..GFSADYSSFDGRAPIFAFQWF....CDLVDD..YYgspPGS.PD.S.NARHV...........LL......MMASC...HYT....ICE.NKVF...........................RLVGGMPSGFALTVIFNSLLNE...FYM.R.YAFIS.LLRRPHIAAQaig..........................ckpSDFNKL.FVAV..YGDDNLVAVPMELHWY....TLPAIAQ.........................ELEM..VNVIIKN.gIDKNMDvsSSK...MLDLSELTFLS..RGF..KRHRLG............yVQAPLKWVSIIEPMYWI.RPSvGCPD...........ALAMLENIDTGVREAFHH...GPQVF.E...KLVTDVQNALKERCFPATT........fPTYFELEQDWL--v...........................................................................................................
#=GR POL1_TOTV/1134-1642         pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_VESVA/1377-1852                   ......................................................................................imk---GTRLHVSPAHVDDYEECT--.....HQPASLGAGDPRCPISL.......------TGIMVNNLQPY...TEAS..P..GPD-TATLNRVSKML.TSHME..GYV.PKVH.....KTEE.DSISA--......FYMLN.......HDTLCG-PYI--......GARKKDHVKDGVLD........................................KNLLDLLSSKWNR.AKLG.LA.....LPHEYALGLKDELRPKDKV........AVGKRRLIWGCDVGVSTVCAAAFKRVSESIMAN..HALGFIQVGINMDGPA.VEDLFKRLER..pKHD..RYCVDYSKWDSTQPPKVTSQS....IDILRH..FT...--D.KS.P.IVDSA...........CA......TLKSN...PIG....IFN.GVAF...........................KVAGGLPSGMPLTSIINSLNHC...LMV.G.SAVVK.ALEDSGVRVT...............................wNIFDSM.DLFT..YGDDGVYIVPPLISSV....-MPKVFA.........................NLRQ..FGLKPTR..TDKSDA.eITP...IPADEPVEFLK..RTI..VRTENG.............VRALLDRSSIIRQFYYI.KAE.NTENwtvp..pkridTPSRGQQLYNACLYASQH...GEEFYtS...KIVPLIERAVKLEGLHIEV.........PEFHQAV------aayn........................................................................................................
#=GR POLG_VESVA/1377-1852        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
B8XTP8_COSAA/1673-2117                 ....................................................................................vhvpr-----TSKLKRTNATYPAT--EK.....YGPAALSRYDPRLNEGV.......--NLDEVIFSKHTQNTL...V--E..K..GSTFRSALDMAAEIY.GEKFR..GND.FSPL.....SVED.AILGIPG......LDRLD.......PNTASGLPY---......TKTRRQMIDFNTGQ........................................-ILDDTLKCRLGQwLAGR.PP.....QEVHYQTFLKDEIRPIEKV........KAGKTRIIDVPPLDHVIAFRMLFGRFIAHYHLN.fGFKTGSAIGCDP-DVA.WASFGFELSG...FPY..LYDFDYSNFDASHSTSIFEIL....E---QK..FF..sPEL.GF.D.PRCSL...........LL......KSLAV...STH....CYE.NKRL...........................QIAGGLPSGTAGTSVLNTVINN...IIF.H.GALYH.TYTNFERDD-................................-----I.SMLA..YGDDIVVASKFELDLV....---MVKA.........................FMNR..IGYKITP..ADKSDE..FRP...KCM-DDICFLK..RRF..VKVAGV.............WAPVMETENLEAMLSWY.KPG.TLNE...........------KLQSVSRLAHFS...GRDVY.D...HLFKPFI------------.........-------------rdgfdvtpwkqlhle.............................................................................................
#=GR B8XTP8_COSAA/1673-2117      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POL1_BBWVS/1175-1673                   ......................................................................................vgs---GGKTSFLETPIEWQLNRPCG.....KIPSILVKGDVRLAGTE.......--NADYDPFAVGMTKYA...KEAG..PfePNGLDRVCESIAETW.HDASD..GFE.FGPV.....DLEA.ALNGIENm...eyFDALV.......LSTSEGYPYRLDrk..pgEKGKARYVEGEPGNle....................................itDERILADIHWFEE.ISKT.QV.....PDLYCIECVKDERLPVRKV.......iKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKR..RDVLPCQVGINPYSRQ.WGKVADRLLE..kGNS..ILCCDYSRFDGFLPKCIMVKI....AEMFSN..IV..gETG.AE.R.EQTKN...........LM......LACCS...RYA....ICG.RVLY...........................RVENGIPSGFPLTVIVNSILNE...ILI.K.YAYWK.CFETESLIRD................................HFDTYV.AMVV..YGDDNLISVSEAISSK...fNGNFLVN.........................FMCN..LGIKVTD.gVDKTKV..GIE...FRTIEDCDFLK..RKF..KENADG............tWSGVMAEEHLWPQLHFV.KAK.KVEM...........SEAYISNCNNILRELWLG...SPEKA.A...AFRREVISKLKWVEPQRL-.........LTISQ--------valfhneqm...................................................................................................
#=GR POL1_BBWVS/1175-1673        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_BSTV1/2291-2733                   ..................................................................................arsenrl--------SRQHVISGQRESF-I.....HFVEASSKWRPLITPMLgr...lqPSALNREAYYKDVLKYD...KPIR..L..GTVHEEAFQSAVINV.IRILE..NAG.FERG.....GVKA.CFDY--Gk....iFNDLN.......LDAAMGALY---......AGKKKDYFVEATDE........................................EIEEMFLRSAGKI.CANG.H-.....--GVWSALLKAELRPAEKV........AANKTRTFTSAPIDILFGAKAVVDDFNKQFYKR..HLLGPWTVGINKFNKG.WDLLARSLMR...YEW..FIDADGSQFDSSITPLLMNAV....LTIRLY..FM..eRDD.IT.ElMLRNL...........YT......QIIST...CML....AED.GLIV...........................QKHRGNNSGQPSTVVDNTLCLM...IAM.E.YARQR.AISDGHLNM-................................----QM.RYVC..NGDDLLINANEEAKDV....VQGKYEQ.........................YIKE..LELNYCF..DDAFQ-..---...--SIEGVEFMS..HKF..MLRNGI.............YIPKLARHRIVAILEWQ.RSA.EPQA...........---IKSAILAACVEAFG-...-----.-...-------------------.........-------------yddltelireyaisle............................................................................................
#=GR POLG_BSTV1/2291-2733        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POL1_TORVR/1523-2014                   ........................................................................tklelvdeaflvpspve----------------------V.....KIPSILSKDDPRIPEAY.......----KGYDPLGDAMEKF...Y-EP..M..LDLDEDVLESVMADM.YDEFY..DC-.QTTL.....RIMS.DDEVINGsdfgfnIEAVV.......KGTSEGYPFVLSrr.pgeKGKARFLEELEPQPgdtkp.............................kyklvvGTEVHSAMVAMEQ.QART.EV.....PLLIGMDVPKDERLKPSKV.......lEKPKTRTFVVLPMHYNLLLRKYVGILCSSMQVN..RHRLACAVGTNPYSRD.WTDIYQRLAE..kNSV..ALNCDYSRFDGLLNYQAYVHI....VNFINK..LY...-ND.EH.S.IVRGN...........LL......MAMYG...RWS....VCG.QRVF...........................EVRAGMPSGCALTVIINSLFNE...MLI.R.YVY-R.ITVPRPLVN-................................NFKQEV.CLIV..YGDDNLISIKPDTMKY...fNGEQIKT.........................ILAK..YKVTITD.gSDKNSP..VLR...AKPLKQLDFLK..RGF..RVESDG............rVLAPLDLQAIYSSLYYI.NPQ.GNIL...........-KSLFLNAQVALRELYLH...GDVEQfT...AVRNF--------------.........-------------yvnqiggnflslpqwrhcasfhde....................................................................................
#=GR POL1_TORVR/1523-2014        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
D9YV24_PASVA/1966-2425                 ........................................................................................v-HIPRRSRLRPSPAMGAFPVE--.....KIPAALSSHDKRLPEGV.......--DVDTVAFSKQNR---...---G..D..LDKPWPTLPVAVDLY.FSQCD..FPK.LRML.....SMDE.AINGTPL......LDGLD.......MKQSAGYPW-SL......TTNRRSLFTQDPET........................................GKYKPVPELEEAV.LACL.EN.....PDYFYTTMLKDELRPTEKA........LAGKTRLIEAAPIHAIIAGRMLLGGLFEHMHAR..PGQYGSAVGCDP-DYH.WTPFFHSFDR...FAE..VWALDYSCFDSTLPSCAFDLI...aAKLSQI..IT..pLPG.IA.E.DAIVK...........YI......RSISV...SKH....VFG.DRAY...........................LMTGGNPSGCVGTSILNSMINN...SVL.I.SAFLT.HPQFNPAEM-................................------.RILT..YGDDVLYATTPTIHPS....---FVKS.........................FFDQ.nTTLIVTP..ATKAGD..FPD...HSTIWDVTFLK..RWF..VPDEERp..........wyIHPVIEPATYEQSVMWT.RGG.DFQD...........------VVTSLSFLAHHA...GPTNY.D...AWATKVREQAARKGLL---.........PNILPYS------ylhhrwlql...................................................................................................
#=GR D9YV24_PASVA/1966-2425      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POL1_CRLVP/1574-2081                   .......................................................................................fl----EKTSLIPSLISTSIDVERT.....TEPAILSQRDKRLKDSI.......--NPEFDVFLEGMKKYA...VEAH..S..LDEDLEVFEDALDRV.FLEIP..EHA.CEDL.....TNDQ.VCNGIEDd...pyAEGIV.......MQTAEGFPFCTQrp..agASGKSWLFAGAPGDwh...................................ivpGSLLANEMHKKEV.APSRgLF.....EPLIGIDFPKDEKVDSSKV.......yIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQ..HNTIPVKVGIDCLSNE.WSILYHQLRS..kGTN..WFNGDYSRFDGITPRNVLQGI...vKRINKF..YN...NKN.SL.A.ITDSNlsinsdlarslLT......DMAST...RYG....LTN.GDLW...........................YVTSGIPSGFPLTVIVNSLVNN...FFI.H.FSYIK.LMKREELNSLyp............................lhSFRQMV.AYAT..YGDDNLVSVNDVITEK...fNLVKIAD.........................LLAE..HGVTLKN.gADKNEE.iLSP...FYPLEKVDFLK..RKF..VHYQGH.............VVAPLNPVNITERLHWI.RKG.LGEA...........-DATLENCSSAAFEALFH...GRCYY.D...TLVAKIYKACAASKLSIQL.........PTYN---------dalaif......................................................................................................
#=GR POL1_CRLVP/1574-2081        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
M4PJD6_AVISV/1722-2154                 ................................................................................qprrseiyp--------------SPANDGTSS.....VEPPVLSNRDKRLEEPI.......------DDITKHNADRH...KMNR..F..NPP-MDAFQVAKANV.ISELA..SI-.VAPC.....YHMT.YDQVVDS.....sLLPID.......WTTSPGLEF--K......GKTKKQLIDDPAFK........................................ERVMK-LYKS-FA.GGNS.AP.....PQVKYTTYLKDEVRSKEKV........KKGATRTITASSFDYTIACRMIFGNIFRQLFGN..GLPAGFAPGMNP-YTQ.FDELYDSC--...RLN..VICLDYSKFDASLSKELMEHA....IEVVAC..FS...--E.DP.M.SVIRA...........FQ......PTLIS...Q-E....RVS.DELW...........................EVRGSMPSGSPWTTMINTICNL...LMC.K.TYLLD.MGHDITKTY-................................------.-VVC..YGDDCVISVDQCHRLE....---GIEQ.........................WFMD.kFGATVTP..EDKSGK..IKW...RFK-NKLKFLK..RTP..MQLDWLp...........kIVGALDIDSMMDRIQWT.KGH.FQEQ...........-------LNCFYYELALH...GEDTY.N...EARRSI-------------.........-------------afrcpelvhptyhca.............................................................................................
#=GR M4PJD6_AVISV/1722-2154      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
RPOA_EAVBU/2108-2368                   .................................................................................fdpipapd-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........---------------------------------..----------------.----------...-KY..CLETDLESCDRSTPALVRWFA....TNLIFE..LA...--G.QP.E.LVHSY...........VL......N-CCH...DLV....VAG.SVAF...........................TKRGGLSSGDPITSISNTIYSL...VLY.T.QHMLL.CGLEGYFPEIaekyld....................gslelrDMFKYV.RVYI..YSDDVVLTTPNQHYAA....SFDRWVP.........................HLQA.lLGFKVDP..-KKTVN..---...---TSSPSFLG..CRF..KQVDGK............cYLASLQDRVTRSLLYHI.GAK.NPSE...........---YYEAAVSIFKDSIIC..cDEDWW.T...DLHRRISGAARTDGVEF--.........PTIEML-------tsfrtkq.....................................................................................................
#=GR RPOA_EAVBU/2108-2368        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_AEVCA/1662-2124                   .......................................................................................is--VGSKTKYHKSPLYDFCPQEVI.....KCPTKLFYQG-EIDVMQ.......------VMLAKYSSPIV...SEPL..G..YAT---VVEAYTNRM.VSF--..FSE.PRQL.....TYDE.CINGIEG......LDAID.......LKTSAGFPYNTL......GLRKSDLIINGKMA........................................QRLQQDVEKMEED.LHMN.RS.....IQVVFTTCAKDELRPLSKV........MLGKTRAIEACPVSFTILFRRYLGYALAQIQSH.pGFHTGIAVGVDP-DQD.WHCMWYSIVT..qCDL..VVGLDFSNYDASLSPFMIYHA....GRVLGQ..IC...-GL.DP.R.LVD-R...........IM......EPIVN...SVH....QLG.SMRY...........................YVHGSMPSGTPATSVLNSIINV...VNI.-.CHVLC.ALEKISVFE-................................-VFKLF.KILT..YGDDVLLCIKKEYLDQk.sfPLSSFVQ.........................GLEE..LGLSPTG..ADKMEV..--K...VTPVHKMSFLK..RTF.yVDEWSI.............CHPRISEETVYSMLAWK.SDN.ASMK...........-----DLIETSIWFMFHH...GPRKY.V...RFCTWLRGVLCRVGIGLYI.........PTYKELEVRY---drl.........................................................................................................
#=GR POLG_AEVCA/1662-2124        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_PVYN/2293-2763                    ........................................................................................v-ATMKSQLVTKHVVKGECRHFTEfltvdAEAEAEAFFRPLMDAYG.......KSLLNRDAYIKDIMKYS...KPID..V..GVVDRMHLRKPSIGL.SSTCN..VHG.FKKC.....AYVT.DEQEI--......FKALN.......MKAAVGASY---......GCKKKDYFEHFTDA........................................DKEEIVMQSCLRL.YKGL.LG.....---IWNGSLKAELRCKEKI........LANKTRTFTAAPLDTLLGGKVCVDDFNNQFYSK..NIECCWTVGMTKFYGG.WDKLLRRLPE...NWV..YCDADGSQFDSSLTPYLINAV....LTIRST..YMe.dWDV.GL.Q.MLRNL...........YT......EIVYT...PIS....TPD.GTIV...........................KKFRGNNSGQPSTVVDNSLMVV...LAM.H.YALIK.ECVEFEEID-................................---STC.VFFV..NGDDLLIAVNPEKESI....-LDRMSQ.........................HFSD..LGLNYDF..SSRTRR..---...---KEELWFMS..HRG..LLIEGM.............YVPKLEEERIVSILQWD.RAD.LPEH...........------RLEAICAAMIESw.gYSELT.H...QIRRFYSWLLQQQPFATIAqe....gkaPYIASMALRKLYM............................................................................................................
#=GR POLG_PVYN/2293-2763         pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
Q2HWK3_RSET1/1157-1599                 ..................................................................lvktntgksllakvrilddietv-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.--SGIDGm...kfVDAMK.......PTTSMGWPV---......NKAKTTFLTDLVYDpeehktt.........................vcprvlddETLALARKARLAW.LDDK.RS.....-YDIFKTCTKDE---PTKI........TKDKVRCFQASPVSLQFNIRKYFLTLCHFLSSA..SLVSECAVGINSQGRG.WHELNQHMIKy.gKNR..IVAGDFKAYDQHMSARMTLMAa.kvFEYIAG..LAg.yTEE.EL.K.IMRGA...........ST......-EVSY...PVM....SLN.GELI...........................QLYGSNPSGQNLTVYTNSIVNS...LYH.R.CAFRK.IYPNFSGRY-................................--RDAV.ALMT..YGDDVKMSVSPKFPDY....NHTRIQS.........................EFNK..QGIEYTM..AEKEAA..SVP...FIQHEDADFLK..RKS..RWEPSYsytegdgtinkgmWLAMLDEESIFKSLHAN.LAS.KVKS..........pEEVSVQCIEGALREWWFY...GEETF.N...FRHAQMKEVVS--------.........-------------rlgwtnfmstqfwdtysaresrwleq..................................................................................
#=GR Q2HWK3_RSET1/1157-1599      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_BECN1/1159-1638                   ......................................................................................lph---GTKYSISPGMREEAHKCT--.....HQPASLGRNDPRCNQTQ.......------VAMVVKALTPY...TSAP..A..IEKLDPCMVAAITEV.RTAIQ..SLT.PKGG.....FRPL.TFAAA--......WQSLD.......LSTSAG-AL-AP......GKTKRDLCDPDTGMp......................................aGKYREMLLAAWSR.AGTG.TP.....LDHTYIVALKDELRPVEKV........AEGKRRLIWGADARVALIASAALTPVANALKTV..TNLLPIQVGVDPSSANcVSSWVGRLQR...HDH..CLELDYSKWDSTMSPVIINIA....IDILCN..TC...GSD.SL.R.--MAV...........AQ......TLKSR...PTA....LVE.GVSV...........................PTKSGLPSGMPFTSQINSIVHW...ILW.S.ATVRK.CSLPLHIG--................................SVNELA.PFLT..YGDDGLYTIPSHLTKS....-IDEIIS.........................TLKG..YGLSPTA..PDKGAN.vEIKrtsFTYLSGPVFLK..RRI..VLTPGG.............HRALLDLTSLARQPVWV.NGP.RRSVwnheaqpieidAETRTIQLQNVLIELAWH...QPQDF.D...HVLALVVKSAEASGLTI--.........PRYSQEE------araiy.......................................................................................................
#=GR POLG_BECN1/1159-1638        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_NVN68/1300-1767                   ........................................................................................p-ALSTKTKFWRSSPEPLPPGV--.....YEPAYLGGKDPRVQNGP.......----SLQQVLRDQLKPF...ADPR..G..RMPEPGLLEAAVETV.TSMLE..QTM.DTPS.....PWSY.ADA----......CQSLD.......KTTSSGYPH---......HKRKNDDWNGTTFV........................................GELGEQAAHANNM.YENA.KH.....MKPIYTAALKDELVKPEKI.......yQKVKKRLLWGADLGTVVRAARAFGPFCDAIKSH..VIKLPIKVGMNT-IED.GPLIYAEHAK...YKN..HFDADYTAWDSTQNRQIMTES....FSIMSR..LT...--A.SP.E.LAEVV...........AQ......DLLAP...SEM....DVG.DYVI...........................RVKEGLPSGFPCTSQVNSINHW...IIT.L.CALSE.ATGLSPDVV-................................---QSM.SYFS.fYGDDEIVSTDIDFDPA....---RLTQ.........................ILKE..YGLKPTR..PDKTEG.pIQV...RKNVDGLVFLR..RTI..SRDAAG.............FQGRLDRASIERQIFWT.RGP.NHSDpse....tlvpHTQRKIQLISLLGEASLH...GEKFY.R...KISSKVIHEIKTGGLEMYV.........PGWQAM-FRWMR-f...........................................................................................................
#=GR POLG_NVN68/1300-1767        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
R1AB_BRV1/4879-5187                    ............................................................davyralgpenitklfeyaqkaplpfctk-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.-------......-----.......------------......--------------........................................-------------.----.--.....------------------Iitk.falsAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVaqNSQGFCLIGVSKYGLK.FSKFLKDKYGaieQFD..VFGSDYTKCDRTFPLSFRALT....AALLYE..LG..gWEE.DS.W.LYLNE...........VN......SYMLD...-TM....LCD.GMLL...........................NKPGGTSSGDATTAHSNTFYNY...MVH.Y.VVAFK.TILSDLSDC-................................------.----..----------------....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........------------------...-----.-...-------------------.........-------------nkvmriaahnayttgdygvfntlleeqfqtnyflnflsddsfifskpgalkiftcenfsnklqtilhtkvdltkswattghieefcsahiiktdgeyhflpsrgrlla
POLG_HAVHM/1750-2215                   .........................................................................................MNVVSKTLFRKSPIYHHIDKTMI.....NFPAAMPFSKAEIDPMA.......------VMLSKYSLPIV...EEPE..D..YKEASIFYQNKIVGK.TQLVD..DF-.---L.....DLDM.AITGAPG......IDAIN.......MDSSPGFPYVQE......KLTKRDLIWLDENGlll..................................gvhPRLAQRILFNTVM.MENC.SD.....LDVVFTTCPKDELRPLEKV........LESKTRAIDACPLDYSILCRMYWGPAISYFHLN.pGFHTGVAIGIDP-DRQ.WDELFKTMIR..fGDV..GLDLDFSAFDASLSPFMIREA....GRIMSE..LS...--G.TP.S.HFGTA...........LI......NTIIY...SKH....LLY.NCCY...........................HVCGSMPSGSPCTALLNSIINN...VNL.Y.YVFSK.IFGKSPVFF-................................--CQAL.KILC..YGDDVLIVFSRDVQIDnldlIGQKIVD.........................EFKK..LGMTATS..ADKNVP..--Q...LKPVSELTFLK..RSF..NLVEDR.............IRPAISEKTIWSLIAWQ.RSN.AEFE...........-----QNLENAQWFAFMH...GYEFY.Q...KFYYFVQSCLEKEM-----.........IEYRLKSYDWWRM............................................................................................................
#=GR POLG_HAVHM/1750-2215        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
Q7T7T5_HARNA/1275-1680                 ..........................................................................qckviyppltlnqiv-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.--CGIDGe...ghIDHME.......QNTSAGCPHF--......-GPKSQFMRFETDSngeqv..............................figltDVQQQSFDEMIAC.LERG.LP.....VPCLFVATKKDEALRIGKV........P----RTFYAASMNVIMAVRKYFCPVLQALKAN..PIHAEIAIGTNAFGKD.WADIYSHLASh.sTET..VIAGDYSSFDMSHNADAVRCAmqvlLDLIDE..SS..lYSD.VD.K.LAART...........LV......ESLGQ...SFL....AFD.GTWM...........................QVIGWVMSGVPLTAELSSTLNQ...IYM.R.VVWKV.VT-QRPISD-................................-FRSHV.ALIV..YGDDNNAAVRDEPRYN....-FQSVAV.........................TMGK..FRMTYTN..TDKNDE..MHI...YQRLEDAEFLK..RLW..VPGPLK.............VYAPLSWDSINKRIVWT.RSR.APDR...........---VRSLVYSVAADCLEHqfeGLEYW.E...KFCHTL-------------.........-------------cqeeevdgqvpykhlvegdpi.......................................................................................
#=GR Q7T7T5_HARNA/1275-1680      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
NS1AB_TASV1/1260-1545                  ..............................................................................deyktvwqvgp-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.-------......-----.......------------......--------------........................................-------------.----.-R.....EKPLWWCFLKTEVLKLAKI........EQDDIRMILCTDPVFTRIGAAFEQHQNSLMKLE..TENHHAQVGWSPFFGG.IHRRATRLYG..eHRY..YVELDWTRFDGTIPPELFRRI....KLMRFF..LL..dPKY.KT.P.ENRDR...........YN......WYVEN...LIDkvvlLPT.GEVC...........................KIYGGNPSGQFSTTVDNNFVNV..wLTVfE.LAYLF.YKEHNRLPTI...............................cEIKKHT.DWIC..YGDDRLLAVDKRFINS...yDTAAVIA.........................MYKD.vFGMWVKP..DNIK--..--V...FPSLEGVSFC-..---..------.............-----------------.---.----...........------------------...-----.-...-------------------.........-------------gmvwtkrkgqyvgkpnvdkilstls...................................................................................
#=GR NS1AB_TASV1/1260-1545       pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_PYFV1/2270-2778                   ........................................................................................p-KSITKSTIVPSLIQPYMPRKPL.....TEPAILDPRDVRLGENRyd...pmIDGIKKYEEQARPIKIS...WRNQ..I..IESMAAQMQDWETFM.VRE--..GYM.TMDL.....PMSV.VINGIDGv...eyYEPLN.......MSTSEGYPLILNrp.kdaHGKEYLFETMESGErr....................................ikSAKLEAHYESYGH.ALQStEP.....FPLICIECPKDERRALDKI.......yEKPKTRLFSILPVEFNMHARRLFLDFNVFVMAN..RHKHGIMVGINPHSRE.WSDLAISLAS..fSPY..GFNGDFANFDGMFHPSSFSMV....SELANI..FY...-GN.FL.S.TERDN...........LT......RMLTN...RFS....LMK.GAIL...........................RVPGGGPSGFPMTVIFNSFINL...FYL.Q.SAWIM.LARFNGRQDIsh............................pcNFPKYV.RACV..YGDDNIVAIKMEVLPW...yNLQTVSE.........................ALFD.yFGVTMTDgaKNKASE..AKP...YGKILEFDFLK..RHF..KADELIp..........slFHAPLHKRSIEEQVYWI.REG.GNSL...........-ELLEANIENALYEAHHH...GREYY.E...ELKDQIKKAMNRAGYMSFV........aPSYLMCRQRWLQQ............................................................................................................
#=GR POLG_PYFV1/2270-2778        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
Q66776_ERBV1/2133-2571                 ........................................................................................v-HVPRKTKLRPTVAINTFECD--.....VEPAVLSKFDRRLEEP-.......-DSFELTLLHKNDRRYP...EDTS..M..DKHLEAAVEAYASSL.FAQI-..GTD.NGII.....SEYE.AVTGIEN......LDSVE.......TTTSPGLPYTTA......GIPREALFDPDKTQ........................................--LIGPAAERLQE.FLRG.DF.....SKHVFQTFLKDELRSKAKV........RAGNTRVVEVAAVDHVVAGRMLLGKFTAKMHAN.nGLGIGSAVGCNP-DVD.FTRFAYQILE...WDY..VYDIDYKNFDASHSPKVFQYL....KKLL--..-S...PEN.GF.D.VRLQK...........YI......DSLCY...SKH....QFG.DTYY...........................ECEGALPSGCSATSILNCLMNN...IVL.R.AAAYD.VFTNYEEGD-................................-----L.AFLT..YGDDVLLCANQPLPLE....---RFRK.........................SLAK..LGYTITP..ADKSSV..FPE...VSTLADVVFLK..RRF..KPDEEFp..........flFKPVMDVRNLQDHLRYA.KPG.TLRE...........------KLLSTTDLAVHL...GPLEY.A...RLFRPFV------------.........-------------evgy........................................................................................................
#=GR Q66776_ERBV1/2133-2571      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
D9YV26_OSCV1/1798-2252                 ........................................................................................v-HIPRNSVLKPSPAAGAYPTV--.....LEPAVLRRSDGRLLDGV.......--VLDEAIFS-------...--KH..D..KGDMTEPWKNLPQAF.SVYFN..QFQ.NKEI.....RTLT.LHEAINGt...plLDGID.......MNQSPGYPYITQ......GVSRRSLFTWNPDGh......................................wDPVPELVAEVERA.LENP.--.....QEFIYTTFLKDELRKVEKV........ENGLTRVIEAAPLPVILAGRMLLGGLFEEMQSQ..PGKYGSAVGCDP-DID.WTKFFWKFER...FEH..VYDMDYKAFDSTVPTAAFDLL....SYHLER..LI...---.-G.D.PRISK...........YI......SSIAS...SRH....VYG.NKIY...........................LMLGGMPSGCVGTSILNTICNN...CFV.L.SALLE.HKDFDINQY-................................------.YIIA..YGDDVVYATNPPISPT....----FIK.........................SFYDryTPLVVTP..ADKSDK..FNE...SSTIFDVTFLK..RSF..VPDPTKp..........wlIHPLIDPVVYEQSCMWV.RDG.DWQD...........------TLDSLCQLAFHS...GPKTY.A...RWVETVRAKAHSRGV----.........-------------lprfypfdylqkrwelk...........................................................................................
#=GR D9YV26_OSCV1/1798-2252      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_SVSAP/1226-1696                   .......................................................................................mp--TGTRYHRSPAWPEEQPGET--.....HAPAPFGAGD---KRYT.......---FSQTEMLVNGLKPY...T-EP..T..AGVPPQLLSRAVTHV.RSYIE..TII.GTHR.....SPVL.TYHQA--......CELLE.......RTTSCG-PFV--......QGLKGDYWDEEQQQy......................................tGVLANHLEQAWDK.ANKG.IA.....PRNAYKLALKDELRPIEKN........KAGKRRLLWGCDAATTLIATAAFKAVATRLQVV..TPMTPVAVGINMDSVQ.MQVMNDSLKG...-GV..LYCLDYSKWDSTQNPAVTAAS....LAILER..FA...--E.PH.P.IVSCA...........IE......ALSSP...AEG....YVN.DIKF...........................VTRGGLPSGMPFTSVVNSINHM...IYV.A.AAILQ.AYESHNVPYT...............................gNVFQVE.TVHT..YGDDCMYSVCPATASI....-FHAVLA.........................NLTS..YGLKPTA..ADKSDA..---...IKPTNTPVFLK..RTF..TQTPHG.............VRALLDITSITRQFYWL.KAN.RTSDpssp...pafdRQARSAQLENALAYASQH...GPVVF.D...TVRQIAIKTAQGEGLVLVN.........TNYDQALATY---na..........................................................................................................
#=GR POLG_SVSAP/1226-1696        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
H6VBU5_CADIV/936-1394                  .......................................................................................fa---PTHTKLKRSPVYGVYPVT--.....KEPAPLKPTDRRIDEGV.......--DFNEAVFGKYGADMK...EPFR..N..LDVGRDVV---IARL.KKVLP..TKK.FAPC.....TVSE.ALNGKDG......LPKLD.......LKQASGYPYNLS......AIKRKHLIESDKDG........................................FLTATPKLLADIE.ESKK.HP.....EKFPYTSFLKDELRSVKKV........KAGKTRVVEAGSLPVIVEGRMIFGNLFAYFNTH.pGFETMAAVGCDP-EVC.WTDWYYKMRE...KAH..TWDYDYTGFDGSIPSCSFDAL....ADLLCE..FV...--E.NE.D.DVRRY...........IS......NI-KN...SYH....AHD.GNLY...........................LIEGAMPSGCAGTSVFNCLINA...MLC.F.SCFMD.-LEPEMDPF-................................----EP.LLIA..YGDDILVSSDHDLFPS....---RVSE.........................WMKK.nTTFKITP..ADKGEI..FND...DSDVSDVRFLK..RLF..VEDPICe...........lIHPVIETETLEPSLNWC.HEG.EFET...........------KVDAISMLAFHH...GPEYY.R...DWCKKLTDICEERN-----.........-------------isppglkpysvhrnrwlr..........................................................................................
#=GR H6VBU5_CADIV/936-1394       pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_HPE2W/1722-2163                   .......................................................................................my--INTKSQIHKSPVYGAVEVK--.....MGPAVLSKSDTRLEEPV.......-DCLVKKSASKYRVNKF...Q---..V..NNELWQGVKACVKSK.FREI-..FGV.NGIV.....DMKT.AILGTSH......VNSMD.......LSTSAGYSFVKS......GYKKKDLICLEPFSv......................................sPMLEKLVQEKFHN.LLKG.NQ.....ITTIFNTCLKDELRKLDKI........ATGKTRCIEACEIDYCIVYRMIMMEIYDKIYQT.pCYYSGLAVGINP-YRD.WHFMINALND...--Y..NYEMDYSQYDGSLSSMLLWEA....VQVLAY..CH...---.DS.P.DLVMQ...........LH......KPVID...SDH....VVF.NERW...........................LIHGGMPSGSPCTTVLNSLCNL...MMC.I.YTT--.NLISPGI-D-................................-----C.LPIV..YGDDVILSLDKEIEPE....---RLQS.........................IMAE.sFGAEVTG..-SRKDE..PPS...LKPRMEVEFLK..RKPgyFPESTF.............IVGKLDTENMIQHLMWM.KNF.STFK...........-----QQLQSYLMELCLH...GKDTY.QhyvKILNPYLK-----------.........-------------ewnipv......................................................................................................
#=GR POLG_HPE2W/1722-2163        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
Q9WJ28_PTV1F/1795-2234                 .....................................................................................fvyt---PTRTSLKPTFVC--VDPK--.....LEPAALSHLDPRLKEPE.......--NFKAVILSKHVGDSL...QLPW..G..IRW---ASYKYAERI.RAMLP..PDF.LEPL.....SVRE.AVEGIDG......LDPMD.......MDKSPGLPYVKK......GLRRTDLWNPKTGS........................................---SLELMAEINR.YLDY.NY.....DKHVFLTFLKDELRPKEKV........QAGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKN.pGWNTGSAVGVNP-DLA.WTQIFYTAPS...-RN..VLAMDYSGFDASHTSGMFCIL....KHFLTT..LG...---.-Y.G.TLQLS...........YI......DSLCY...SKH....HWD.DETY...........................RLDGGLPSGCSGTTIFNTIMNN...IVA.R.AAASY.AAD-------................................---GPV.GILC..YGDDILVSSPEKFPVS....---DWLE.........................FYSK..TPYKVTA..ADKSEQ..-ID...WRDITQCTFLK..RGF..VLDGSL.............VRPVMEEQHLAELLKWA.RPG.TLQA...........------KLLSIAQLAFHL...PRSAY.N...RLMLPFEEAGYEI------.........-------------psherlneewrem...............................................................................................
#=GR Q9WJ28_PTV1F/1795-2234      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
RDRP_HPBVH/194-421                     .....................................................................................kptd-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........--VKQRVVWMFPFAVNIRELQVYQPLILTFQRL..GL-VPAWVSMEAVDRR.ITKMFDTKGP...RDV..VVCTDFSKFDQHFNPTCQSVA....KELLAD..LL..tGQE.AV.D.WLERV...........FP......IKYAI...PLA....YNW.GEIR...........................YGIHGMGSGSGGTNADETLVHR...VLQ.HeAAISH.HTTLNPNSQ-................................------.---C..LGDDGVLTYP-GISAE....---DVMQ.........................SYSR..HGLDMNL..------..EKQ...YVSKQDCTYLR..RWH..HTDYR-.............-----------------.---.----...........------------------...-----.-...-------------------.........-------------vdgmcvgvystmr...............................................................................................
#=GR RDRP_HPBVH/194-421          pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_FCVUR/1263-1737                   .......................................................................................ip--KGTRLHVSPAHTEDFEECS--.....HQPASLGSGDPRCPKSL.......------TAIVVDSLKPY...C-DK..V..EGPPHDILHRVQKML.IDHLS..GFV.PVNI.....SSET.SMLSA--......FHKLN.......HDTSCG-PYL--......GGRKKDHMTNGEPD........................................KPLLDLLSAKWKL.ATQG.IA.....LPHEYTIGLKDELRPVEKV........AEGKRRMIWGCDVGVATVCAAAFKGVSDAITAN..HQYGPVQVGINMDSPS.VEALHQRIKS...AAK..VYAVDYSKWDSTQSPRVSAAS....IDILRY..FS...--D.RS.P.IVDSA...........AN......TLKSP...PIA....IFN.GVAV...........................KVSSGLPSGMPLTSVINSLNHC...LYV.G.CAILQ.SLEARGVPVT...............................wNLFSTF.DMMT..YGDDGVYMFPMMFASV....-SDQIFA.........................NLSA..YGLKPTR..VDKSVG.sIEP...IDP-ESVVFLK..RTI..TRTPQG.............IRGLLDRSSIIRQFYYI.KGE.NSDDwktp..pksidPTSRGQQLWNACLYASQH...GVEFY.N...KIYKLAQKAVEYEELHLEP.........PTYHSALEHYNN-q...........................................................................................................
#=GR POLG_FCVUR/1263-1737        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
C5MSH2_SALVA/1914-2363                 .........................................................................hvsrrsrlhpippafg-------------------AFPI....tKEPAALSRKDPRLPEGT.......----DLDAITLAKHD--...--KG..D..IATPWPCMEEAADWY.FSQLP..DN-.LPVL.....SQED.AIRGLDH......MDAID.......LSQSPGYPWTTQ......GRSRRSLFDEDGNP........................................--LPELQEAIDSV.WDGG.S-.....--YIYQSFLKDELRPTAKA........RAGKTRIVEAAPIQAIVVGRRLLGSLINHLQGN..PLQHGSAVGCNP-DIH.WTQIFHSLTS...FSN..VWSIDYSCFDATIPSVLLSAI....A---SR..IA..aRSD.QP.G.R-VLD...........YL......SYTTT...SYH....VYD.SLWY...........................TMIGGNPSGCVGTSILNTIANN...IAV.I.SAMMY.CNKFDPRDP-................................-----P.VLYC..YGDDLIWGSNQDFHPR....ELQAFYQ.........................KFTN..F--VVTP..ADKASD..FPD...SSSIFDITFLK..RYF..VPDDIHp..........hlIHPVMDEQTLTNSIMWL.RGG.EFEE...........------VLRSLETLAFHS...GPKNY.S...AWCEKIKAKIRENGCDA--.........-------------tftpysvlqrgwvs..............................................................................................
#=GR C5MSH2_SALVA/1914-2363      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
Q9DLK1_FMDVP/1865-2317                 .........................................................................................VHVMRKTKLAPTVAHGVFNPE--.....FGPAALSNKDPRLNEGV.......--VLDDVIFSKHKGDTR...MSEE..D..KALFRRCAADYASRL.HSVL-..GTA.NAPL.....SVYE.AIKGVDG......LDAME.......PDTAPGLPWALQ......GKRRGALIDFENGT........................................--VGPEVEAALKL.MESR.EY.....-KFVCQTFLKDEIRPLEKV........RAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSN.nGPQIGSAVGCNP-DVD.WQRFGTHFAQ...YKN..VWDVDYSAFDANHCSDAMNIMf..eEVFRTE..FG...---.-F.H.PNAEW...........IL......KTLVN...TEH....AYE.NKRI...........................VVEGGMPSGCSATSIINTILNN...IYV.L.YALRR.HYEGVELDT-................................-----Y.TMIS..YGDDIVVASDYDLDFE....---ALKP.........................HFKS..LGQTITP..ADKSDK.gFVL...GHSITDVTFLK..RHF..HMDYGTg...........fYKPVMASKTLEAILSFA.RRG.TIQE...........------KLISVAGLAVHS...GPDEY.R...RLFEPFQGLFEIPSYRSL-.........-------------ylrwvna.....................................................................................................
#=GR Q9DLK1_FMDVP/1865-2317      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
RDRP_CPVKS/22-375                      ...................................................................apkkifrskyiptglvprlkyw-----------------------.....-----------------.......RDVPSRAEMSKRIGKYF...EDEF..K..FYPNEEKLNEAVNIV.QEKWI..SHY.GTSL.....NVTS.VSE-S--......FRTLP.......KSTSAGLPF---......----KSGCTKYEAR........................................NKMMRFARSQWDR.VSKE.--.....LQLQVLPCRLGARCQLRKR........GENKPRLIWAYPGYL-SIIENQYLTAIKKVPPP..NFIGWSTNWLDG-GKS.LNRLLFGDKW..tWQS..IAQIDFSSFDATVRTELIFHA....FKILRS..LF..dLTR.TE.N.IMLDQ...........LR......HYFIN...TPI....LFY.DKII...........................VKNRGIPSGSAFTQIIGTIVNM...IAC.Q.YASLR.SRDYNLR---................................-----I.PFSC.wLGDDSFLNFETALCRQ...eFEYDYLE.........................KFKE..LGLNVSI..-DKTH-..---...-----------..---..------.............-----------------.---.----...........------------------...-----.-...-------------------.........-------------yttrfiddfevrf...............................................................................................
#=GR RDRP_CPVKS/22-375           pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
Q8JJT0_PSV13/1874-2321                 ........................................................................................i-NVRTKTAFHPSVFHDVFPGS--.....KEPAAMSTNDPRLEVDL.......----HEAIFAKYKGNVD...A--T..L..PEEALIAIDHLVSKF.KAIVP..DDL.TEKM.....SLED.VVYGTDN......LDGLD.......LTTSAGYPYNTM......GIRKKDLIPPKGQS........................................---LSPLLKALDL.YGYD.LP.....----FTTYLKDELRPKEKV........KMGKTRVIECSSLNDTIMMKQTFGRLFQVCHKN.pGTYTGGWVGCNP-DVD.WS----KLREi.gDAY..VCAFDYTNWDASLSPLWFDAL....KLFLSK..LG...---.-Y.S.GRDLV...........LI......AQLCY...SNH....IYK.NEGY...........................KVAGGMPSGCSGTSVFNSIINN...IVI.R.TLIML.VYKNINLDE-................................-----L.LVLC..YGDDLLVAYPYELDPN....---VLVP.........................LAKS..YGLTITP..ADKSTT..FQT...GTKLTDVTFLK..RGF..KFDEEYp..........flCHPVFPMEEVHESIRWT.KNA.SYTQ...........-----EHVTSLCLLAWHN...GEEVY.E...EFCTKIRSVPVGRAL--IL.........PPYSQLRRSWLDM............................................................................................................
#=GR Q8JJT0_PSV13/1874-2321      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
Q33DY4_AURN1/1024-1531                 .......................................................................aeeltgvspfkdgkplyg-----------------------.....-APPFSPGFNPNTGEYQg....pyNHFVKKCGVVKKSLHPE...ILRQ..T..IDTVREHILSGLKA-.---KG..VTK.IAPV.....TLEV.AQNGHPEd...fyMRAMK.......PSTSGGWAW---......PGSKKKYSEQCSLDfksd...............................aymplYDVKEQVVEQLLA.YERG.ED.....ALPLLGAQLKDEPRAYKKI........VDRKTRVFCMSPYESTLVNRMYLMPFYTLMVEH..GDIFRTAIGINMHSQD.VGDLVTRMTD..fSDQ..FMEGDYGGYDTSMPYDIGLAAntvvYQVCQD..LG..yDSH.AL.Q.MVRGI...........LS......DNLYP...-TV....VMR.GDVF...........................AAPALQPSGKYATAEDNSLRGL...ILM.V.YAWIS.ECTDIGDQCTgrart.....................tqfqpeDFFTQV.LPVI..YGDDMLAGVKPVAQQF...yNNNTYQT.........................FCKE.vYGLEFTN..AQKTAE..MAN...FLEWDDTSFLK..RSF..VFREDLq...........vWVAQLELASIMKSICYYlPSK.SVNE...........DDQLIDSCVSAMRELFFHl.pKEEFE.-...-------------------.........-------------vrrtrfaevcadlfnkdatdvlkvfpsfdcirqs..........................................................................
#=GR Q33DY4_AURN1/1024-1531      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
RDRP_NODAM/531-717                     ..................................................................................griissf-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........----------ADMRFLLRFSSYTLAFRDQVLHA.eHNRHWFCPGLTP-EQI.ATKVVDYVSG...VEE..PSEGDFSNFDGTVSEWLQRHV...mNAVYLR..YF...NHR.AQ.R.DLRSY...........TD......MLVSC...PAR....AKRfGFAY...........................DAGVGVKSGSPTTCDLNTVCNG...FLQ.Y.CSIRM.-THPELTPI-................................---DAF.RLIGlaFGDDSL----------....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........------------------...-----.-...-------------------.........-------------ferrfaknyakvsae.............................................................................................
#=GR RDRP_NODAM/531-717          pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
Q0ZQM1_DHAV/1810-2228                  .......................................................................................yh--QPRKTAYMKSPVYE--DSP--.....YEPAVLSINDQRLGVKI.......-EDMAKKASDKYIGNVF...QPP-..P..EAF-QLAKTHVAEKL.SRVLG..CHD.TISY.....ESAV.SSDVI--......--PMN.......WDTSPGIKYK--......GETKR---------........................................-QLVLKSSFRQDV.LKQL.QS.....PSTVFTCYLKDELRKKEKI........KEGKTRGIEACNFDHTVAYRMVMGDIFSNIYDD.sFIMSGCAVGINP-FCE.WDNLLANLQP...YN-..-LCLDFSGFDGSLSAQILEEA....VDVLSY..FH...--N.DP.A.LVKRI...........HA......PTIY-...STH....YVT.DEIW...........................QVEGGMCSGSPCTTVVNSIVNQ...LAC.Y.T-ILA.VLGYDINQ--................................-----C.YVVS..YGDDCVLSVPEVRDIS....---KLSH.........................YFKL.fFGMTATA..SDKESD..ITW...LAP-MEIEFLK..RTP..AFLPGTr...........kIIGVLDKEVLEGKIQWC.KGP.EAFK...........-----QQLDSFLLEAALH...GEEYY.H...EVTSKLK------------.........-------------arcp........................................................................................................
#=GR Q0ZQM1_DHAV/1810-2228       pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
F4YYF3_HUNVO/1808-2238                 ...................................................................................iytphr------TQLYPTVACNDET---T.....VEPAALSPNDKRLQRPE.......--EFKRTILAKHVGD--...--RT..D..GPTAMLRGSRHKVRL.VRAKC..GPV.NERL.....SLHE.AVFGTDN......LDPMD.......QTRSPGWPYI-G......SKRRPELLWQTDNG........................................LELDPVLRAELML.MMEG.DF.....SNHIFVTFLKDELRDKEKV........KQGKTRVIDIASYGHAIMGRVLFGRLAAAMHAH.nGVELGSAVGTNP-DID.WTRYAAEFK-...FKN..FVDVDYSGFDATHSSFSFHCL....KVFLKE..LG...---.-F.D.EIALK...........YV......DSLCD...STH....IWD.DEIF...........................QITGGLPSGCSCTSIFNTIINN...IVV.R.SLVPE.VYD-------................................---GEF.QMLA..YGDDLVLCSQDTFSVE....---KYKE.........................ILEE.vTNYRITP..ASKTGT..-FE...WTGLSGVVFLK..RYF..YQDGLL.............VRPVMTYKNLHNILSWA.RAG.TVQE...........------KLNSVARLAQHR...GEQDY.N...KLMEPFV------------.........-------------dcgyvvps....................................................................................................
#=GR F4YYF3_HUNVO/1808-2238      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_RHDVF/1279-1750                   .......................................................................................pv--SGTRYAKVPGVPDEYKTGY--.....-RPANLGRSDPDSDKSL.......------MNIAVKNLQVY...QQEP..K..LDKVDEFIERAAADV.LGYLR..FLT.KGER.....QANL.NFKAA--......FNTLD.......LSTSCG-PFV--......PGKKIDHVKDGVMD........................................QVLAKHLYKCWSV.ANSG.KA.....LHHIYACGLKDELRPLDKV........KEGKKRLLWGCDVGVAVCAAAVFHNICYKLKMV..ARFGPIAVGVDMTSRD.VDVIINNLTS..kASD..FLCLDYSKWDSTMSPCVVRLA....IDILAD..CC...--E.QT.E.LTKSV...........VL......TLKSH...PMT....ILD.AMIV...........................QTKRGLPSGMPFTSVINSICHW...LLW.S.AAVYK.SCAEIGLHCS................................NLYEDA.PFYT..YGDDGVYAMTPMMVSL....-LPAIIE.........................NLRD..YGLSPTA..ADKTE-..FID...VCPLNKISFLK..RTF..ELTDIG.............WVSKLDKSSILRQLEWS.KTT.SRHMviee..tydlaKEERGVQLEELQVAAAAH...GQEFF.N...FVCRELERQQAYTQFSV--.........YSYDAARKILAD-r...........................................................................................................
#=GR POLG_RHDVF/1279-1750        SS    .......................................................................................HH--HS-TTSB--TTS-SBGGGT--.....-HHHHHHHHHHHHHCTT.......-------EEEHHHHHTT...EEEE..H..HHHHHHHHHHHHHHH.HTTTT..B-T.--TT.....HHHH.HHTT---......TTHHH.......HHHHHH-HTT--......HHHHHHCS--EEEE........................................CT-----HHHHS-.EEET.EE.....HHHHHTHHHHHHHHHTTT-........SSS--B-GGG-EETTEEEEEETTCEEEEE-HHH..HHHHEEEEEEEESSS-.------HHHH..HHHH..HHHTT-HHHHHHHHHHHHHHT....-----H..HH...--H.XX.X.XXXXX...........XX......XXXXX...XXX....XXX.XXXX...........................XXXXXXXXXXXXXXXXXXXXXX...XXX.X.XXXXX.XXXXXXXXXX................................XXXXXX.XXXX..XXXXXXXXXXXXXXXX....-XXXXXX.........................XXXX..XXXXXXX..XXXXX-..XXX...XXXXXXXXXXX..XXX..XXXXXX.............XXXXXXXXXXXXXXXXX.XXX.XXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXX...XXXXX.X...XXXXXXXXXXXXXXXXX--.........XXXXXXXXXXXX-X...........................................................................................................
#=GR POLG_RHDVF/1279-1750        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
O70710_IFVS/2465-2952                  ......................................................................................htf-----QSKIVPSVLQSEAYDP-E.....KEPCIQSRTDPRYTHGA.......DPLTDGVATIGQPTKPL...N-DE..I..LMLAYESVRDELLGV.LPP--..PYV.QPPV.....SIRE.AIT-AERa...piSSSMN.......LATSAGYPLAGRg...srEKKKSDYILGGQLK........................................ASVHNKINKAYVQ.RTNG.IR.....PPCVYWAHLKDELRPSEKL.......rRFGGTRVFSVPPLELVLNSRRFLLPFMDAFQSF..PIEAHHAIGLNPNSGD.WRRLRDTLLE..kGPC..LLQMDYKNYSDAIPKECVAKA....FHIIVD..YYr.kWHC.ST.V.EIENA...........LK......TLFLD...TADa.elLVY.GDVF...........................KVNNGVLAGHPMTSVVNSVVNL...ILM.N.YMWIK.ITRRRASEF-................................--FKLT.YIIV..MGDDVVISLPKQLTEE...fDCRKICA.........................EFAK..YDIKVTD..SEKNLTgePKP...YDSFDKFEFLS..RGF..SDCDAYp..........diTFAPVKTIALFDCPLWI.SKG.QDEE...........-EQTIQAIQAGLLLAFDH...GPEFF.G...KYKQLLLEGTSVPTYNYF-.........-------------twselyslfhgd................................................................................................
#=GR O70710_IFVS/2465-2952       pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
A0A023T7J3_ROSV2/1995-2452             ........................................................................................v-HVPTKSKLRPSPAHGAFPVK--.....KQPAVLRQSDERLCAVD.......---LDEVLFSKYTEDMV...KPFV..G..LDIGLEVVRNRLRTL.I----..PSK.LPQI.....SISQ.AINGIDN......MDGLD.......MNQSPGLPYVSE......GVSRRALFDCVDGQ........................................-WVPRERLASDIA.QVSA.DP.....SLGHFATFLKDELRSVDKV........KVGKTRVVEAGSLPHIIVGRKIFGNLFALFNAN.pGFQTMCAVGCDP-DTT.WTELYHPLSA...KTY..VFDYDYSGFDGSVPSCCFDAL....ADLLVD..FV...---.EG.E.EDVRK...........YI......ASLKT...SFH....HYR.GKLW...........................RLDGAMPSGCCGTSVFNSLVNA...MLL.F.SAFSQ.ICPDFKASE-................................-----P.LLVA..YGDDVLVGTDQSLLPS....---LVAE.........................WVNS.hTTFKITP..ADKGSV..FND...ESDIHSVQFLK..RHF..TPDPDFp..........alIHPTIDPDTYEQSVMWQ.RTG.DFQE...........------TVNSLALLVFHR...GPKTY.G...RWCSSVSRACVDGGY----.........-------------pppffppfsllraqwlk...........................................................................................
#=GR A0A023T7J3_ROSV2/1995-2452  pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLN_CRPVC/1252-1761                   ....................................................................................vgqav-----KTTLLKSCIYGMLSKP-I.....TKPAHLTRTR--LPNGEiv..dplMKGLKKCGVDTAVLD--...-AEI..V..ESAALDVKQVVLTQY.NSMLD..VNKyRRFL.....TYEE.ATQGT-Gdd..dfMKGIA.......RQTSPGYRYFQMpr..klP------GKQDWMGsgeqyd............................ftsqraQELRRDVEELIDN.CAKG.II.....KDVVFVDTLKDERRPIEKV........DAGKTRVFSAGPQHFVVAFRKYFLPFAAYLMNN..RIDNEIAVGTNVYSTD.WERIAKRLKK..hGNK..VIAGDFGNFDGSLVAQFFGQSc..gKSFYPW..FKt.fNDV.NT.E.DGKRN...........LMiciglwTHIVH...SVH....SYG.DNVY...........................MWTHSQPSGNPFTVIINCLYNS...MIM.R.IVWIL.LARKLAPEMQs.............................mkKFRENV.SMIS..YGDDNCLNISDRVVEW...fNQITISE.........................QMKE..IKHEYTD..EGKTGD..MVK...FPSLSEIHFLK..KRF..VFSHQLq...........rTVAPLQKDVIYEMLNWT.RNT.IDPN...........-EILMMNINTAFREIVYH...GKSEY.Q...KLRSGIEDLAMKG------.........-------------ilpqqpqiltfkaylwda..........................................................................................
#=GR POLN_CRPVC/1252-1761        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
I3VR62_MISV1/1826-2277                 ........................................................................................i-HVPRKTKLRKSPAFPIFQPS--.....AGPAVLSKNDVRLNPEV.......--DFDKQVFSKHSAN--...-QKV..Y..PEAFRRMARWYANEV.FTHI-..GKD.NGPL.....SLKD.AIKGIDF......LDAMD.......PTTSPGLPYSAA......GIQRTDLVDFDTGE........................................-IISAALAVEYNN.YVEG.NY.....EEHTFQTFLKDEIRSEEKI........KAGKTRIVDVPSLAHVIMGRVLLGRFCSKFQAS.pGTTLGSAIGCNP-DTD.WTKFAHELME...RHW..CYDIDYSNFDSTHGTGMFELL....I---EC..FF..tKEN.GF.S.PAVAP...........YL......RSLAT...SKH....AWM.DKRY...........................LIEGGLPSGCSATSVLNTVMNN...III.R.ALLSL.TYSNFHPED-................................-----V.AVLA..YGDDLLVASDFVLDFN....---RVRA.........................TANE.hTLYKLTT..ANKAPD..FPE...TSTLLECQFLK..RKF..VLHSVRn..........fiWRPVMDTTNLQTMLSFY.KPN.TLSE...........------KLLSVAQLAFHS...GYHTY.E...QLFEPFRELQM--------.........-------------kvpswfvlehewe...............................................................................................
#=GR I3VR62_MISV1/1826-2277      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLN_ABPVR/1406-1898                   ......................................................................................epg-----KTDIRPSLVYGKISEI-K.....TKPAILRNVI--VDGKI.......------VNIKHKNLKKC...AMDTpyV..SKEMTEEAFQLVKSVwLKGMR..NEL.KKVL.....TYEE.AICGNDSs...efISAIN.......RSSSPGFPWIRDr....iKGTKGKQGWFGAEGey...................................ildEDVFEAVKTRIQN.AKNG.VR.....TPVMWVDTLKDERRPIEKV........DQLKTRVFSNGPMDFSITFRMYYLGFIAHLMEN..RITNEVSIGTNVYSQD.WNKTVRKLKT..mGPK..VIAGDFSTFDGSLNVCIMEKF....ADLANE..FY..dDGS.EN.A.LIRHV...........LL......MDVYN...STH....ICG.DSVY...........................MMTHSQPSGNPATTPLNCFINS...MGL.R.MVF-E.LCSKKYSALNgtkc........................yvmkDFSKHV.SIVS..YGDDNVINFSDEVSEW...fNMETITE.........................AFEK..LGFTYTDelKGKNGE..VPK...WRTIEDVQYLK..RKF..RYDSKRk...........vWEAPLCMDTILEMPNWC.RGS.LDIQ...........-EGTKVNCENAIMELSMH...EEYVF.D...KWSKVISKAYQKAT-----.........-------------gdcldistyngyaq..............................................................................................
#=GR POLN_ABPVR/1406-1898        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
Q155Z9_SVV1/1731-2179                  ........................................................................................v-HVPRKSKLRKTTAHAVYKPE--.....FEPAVLSKFDPRLNKDV.......--DLDEVIWSKHTANVP...YQ--..-..PPLFYTYMSEYAHRV.FSFL-..GKD.NDIL.....TVKE.AILGIPG......LDPMD.......PHTAPGLPYAIN......GLRRTDLVDFVNGT........................................--VDAALAVQIQK.FLDG.DY.....SDHVFQTFLKDEIRPSEKV........RAGKTRIVDVPSLAHCIVGRMLLGRFAAKFQSH.pGFLLGSAIGSDP-DVF.WTVIGAQLEG...RKN..TYDVDYSAFDSSHGTGSFEAL....I---SH..FF..tVDN.GF.S.PALGP...........YL......RSLAV...SVH....AYG.ERRI...........................KITGGLPSGCAATSLLNTVLNN...VII.R.TALAL.TYKEFEYDM-................................-----V.DIIA..YGDDLLVGTDYDLDFN....---EVAR.........................RAAK..LGYKMTP..ANKGSV..FPP...TSSLSDAVFLK..RKF..VQNNDG............lYKPVMDLKNLEAMLSYF.KPG.TLLE...........------KLQSVSMLAQHS...GKEEY.D...RLMHPFADYGAVPS-----.........HEYLQARWR----al..........................................................................................................
#=GR Q155Z9_SVV1/1731-2179       pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
R1AB_IBVB/4438-4717                    .............................................sagypfnkfgkarlyyemsleeqdqlfeitkknvlptitqmnlk-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.-------......-----.......------------......--------------........................................-------------.----.--.....------------------Ya.....isAKNRARTVAGVSILSTMTNRQFHQKILKSIV-N..TRNASVVIGTTKFYGG.WDNMLRNLIQ..gVEDpiLMGWDYPKCDRAMPNLLRIAAslvlARKHTN..CC..sWSE.RI.Y.RLYNE...........CA......QVLSE...TVL....ATG.G-IY...........................VKPGGTSSGDATTAYANSVFNI...IQA.T.SANVA.RLLSVITRDIvydnikslqyelyqqvyrrvnfdpafvekfysYLCKNF.SLMI..LSDDGVVCYNNTLA--....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........------------------...-----.-...-------------------.........-------------kqglvadisg..................................................................................................
#=GR R1AB_IBVB/4438-4717         pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_RTSVA/2907-3417                   .......................................................................................pt--SVTKTTICKSMIHGLIGEI-K.....TEPSVLSAWDRRLPFPP.......----GEWDPMKDAVKKY...G-SY..I..LPFPTEEIQEVENFL.IKKFR..RKE.NSRRtrnvnSLEV.GINGIDGs...dfWSPIE.......MKTSPGYPYILKrp.sgaQGKKYLFEELEPYPsgrpk..............................yamkdPELIENYERIKEE.VTSG.VK.....PSIMTMECLKDERRKLAKI.......yEKPATRTFTILSPEVNILFRQYFGDFAAMVMST..RREHFSQVGINPESME.WSDLINSLLR..vNTK..GFAGDYSKFDGIGSPAIYHSI....VNVVNA..WY..nDGE.VN.A.RARHS...........LI......SSIVH...RDG....ICG.DLIL...........................RYSQGMPSGFAMTVIFNSFVNY...YFM.A.LAWMS.TVGSSLLSPQgs............................ckDFDTYC.KIVA..YGDDNVVSVHEEFLDV...yNLQTVAA.........................YLSH..FGVTYTD..GDKNPIhmSKP...YEDITKMSFLK..RGF..ERVESSg..........flWKAPLDKTSIEERLNWI.RDC.PTPV...........-EALEQNIESALHEAAIH...GRDYF.D...DLVRRLNSALTRVMLPPTD.........ISFEECQARWW--as..........................................................................................................
#=GR POLG_RTSVA/2907-3417        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POL1_BAYMY/1633-2105                   .......................................................................................ig--QMNKGLIDKHVIVGENDDVYDf..mrEHPTFTWLKD-FMNEYA.......PSVLSYSAYYKDLCKYN...RAKH..V..LTYNPEELHYATKGL.IKMLE..DAG.LTQG.....SVRT.PQQ-V--......ISDIQ.......WNTSAGPSY---......QGKKRDLCAHLSDD........................................EVLHLAEVCRQQF.LEGK.S-.....-TGVWNGSLKAELRTIEKV........EPEKTRVFTASPITSLFAMKFYVDDFNKKFYAT..NLKAPHTVGINKFGRG.WERLHDKLNR..pGWL..HGSGDGSRFDSSIDPFFFDVV....KTIRKH..FL...PSE.HH.K.AIDLI...........YD......EILNT...TIC....LAN.GMVI...........................KKNVGTQR-QPSTVVDNTLVLM...TAF.L.YAYIH.KTGDRELAL-................................-LNERF.IFVC..NGDDNKFAISPQFDEE....FGHDFSP.........................ELVE..LGLTYEF..DDITSD..---...---ICENPYMS..LTM..VKTPFG.............VGFSLPVERIIAIMQWS.KKG.GVLH...........------SYLAGISAIYESf.nTPKLF.K...SIYAYLLWLTEEHEAEILAamtqsstalP------------ipsmldvyrlhy................................................................................................
#=GR POL1_BAYMY/1633-2105        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
NS1AB_HASV1/1068-1326                  ................................................................kmnyfdteenyleahgwapyireft-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.-------......-----.......------------......--------------........................................-----------RV.YKGD.KP.....-EVLWYLFLKKEIIKEEKI........RNSDIRQIVCADP-IYTRIGACLEAHQNALMKQ.hTDTSVGQCGWSPMEGG.FKKTMQRLVNk.gNKH..FIEFDWTRYDGTIPPALFKHI....KEIRWN..FInkdQRE.KY.R.HVHEW...........YV......NNLLN..rHVL....LPS.GEVT...........................LQTRGNPSGQFSTTMDNNMVN-...-FW.L.QAFEF.AYFNGPDRD-................................-LWKTY.DTVV..YGDDRLSTTPSVPDDY....-EERVIT.........................MYRD.iFG-----..------..---...-----------..---..------.............-----------------.---.----...........------------------...-----.-...-------------------.........-------------mwvkpgk.....................................................................................................
#=GR NS1AB_HASV1/1068-1326       pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_SPMMV/2668-3129                   .....................................................................................fanv------TRISKHVIKGKRPSFVEy..cnTYPDNIFMRDNLCEHYG.......PSILSKAAFYKDFTKYD...DPVK..V..GRLDCYAFDTALAMV.HDTLS..QLG.FHGN.....SGSQwDIAEI--......FDDLN.......KKSSMGALY---......SGKKGQWMHGLTPE........................................-DAISLAVESYAL.LNSG.H-.....-LGVWSGSLKAELRHVDKL........KEGKTRVFTGAPIDTLLAGKILVDNFNNYFYKC..HLQGPWTVGINKFNRG.WNKLANYFNH...DWV..FIDCDGSRFDSSIPPIMFNAV....CMLRSV..FGd.lDPD.EN.Q.TLSNL...........YT......EIVNT...PIL....TIE.GNII...........................RKFRGNNSGQPSTVVDNTLILM...IAM.E.YAIAK.VFVTRPDI--................................------.KYVC..NGDDLLINCPRSTANA....ISEHFKD.........................VFAD..LSLNYDF..-DHVC-..---...-DKITDVDFMS..HSFmwLDTEQM.............YIPKLDKERIVAILEWE.RSD.EQFR...........----TRSALNAAYIESFG...YEDLM.T...EIEKFAHFWAKKHGLNDV-.........-------------lmerekvrslyvde..............................................................................................
#=GR POLG_SPMMV/2668-3129        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
I6YQK4_PASI1/1692-2128                 ........................................................................................v-HQPSKSVLKPSPLYGFVEQE--.....LHPAVLSPFDNRLKCEV.......DSVIGRQA-LKYNSNVF...NP--..-..GPYYDEVLEAFAVDF.NGR--..FGI.NEMM.....SAEE.VFA-LSG......DEAIE.......LSTSPGLKYTSK......GLRKRDLVPGGKAC........................................DLLLSDV---ERL.MNDP.KG.....TPVYFYCHLKDELRPQEKI........EQGLTRCIESSDFDYVFSAKRVFCKLFRQLYDS.dPIETGFAVGINC-IAD.WKNLLDGM--...YDY..IYDFDLKGYDGSIPRQLMIDA....CRVLSE..SC...---.SD.E.ELAYN...........LL......HKTVD...SQH....VVG.NQLL...........................TVSGGMASGSPFTTIVNTACNI...LAN.M.TVL--.----EEEGV-................................----EY.TLVC..YGDDILVSTSDPISVN....---DYVD.........................KMGQ.yFGFTVKL..-DGDYP..---...-KTKNNFTFLK..RRT..TYWNGI.............PVGAMEVGLLLQHLGYC.RSV.SVFQ...........-----DQLNSASIELALH...GPETY.N...VLRSRVNSFLNGTGFALM-.........-------------syrraaavv...................................................................................................
#=GR I6YQK4_PASI1/1692-2128      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
I7C489_GALIV/2009-2471                 .......................................................................................pa-HVPRKTKLTHSPAWGAFEPT--.....KEPAALLNHDRRLPDGV.......--TVDEVAFSKQNRG--...----..D..VVEPWPGLTEAADLY.FSQCN..FPR.LKML.....TMDE.AINGTEG......LDGID.......MNQSPGYPWN-Q......RTSRRELFILNEDG........................................-RYEPVEELKLAV.LKLL.QD.....PDYWYSTFLKDELRKTEKA........RAGKTRLVEAAPIDAIIAGRMIFGQLFALFHSN..PGMFGSAVGCDP-DFH.WTPFAHSFKP...FRN..VWSLDYSCFDSTLPSVCFNHI...gSRLQDI..IE..vTEE.CH.P.DIVPK...........YI......NSIRA...SKH....VFG.ARAY...........................VMIGGMPSGAVGTSIFNSMINN...ICV.L.SALIS.RPDFVPTPN-................................----NY.RILA..YGDDVLYACTPDFHPR....---DLKA.........................FYDK.wTPLQVTP..ATKEGD..FPN...SSSLSDVTFLK..RWF..VPDETIp..........yyYHPVIEPDTYEQSVMWS.RGG.EFQD...........------TVTSLCFLAHHA...GPRNY.T...NWIAAVRDACKRNGYDPPIf......leYSYLQMRWM----ql..........................................................................................................
#=GR I7C489_GALIV/2009-2471      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_HRV8A/1721-2163                   ........................................................................................v-HVSSKTRLQPSVFHDVFPGT--.....KEPAVLSSNDPRLETDF.......----DSALFSKYKGNPA...C--Q..V..TPHMKIAVAHYAAQL.STL--..DIN.PQPL.....SLEE.SVFGIEG......LEALD.......LNTSAGFPYVSL......GIKKKDLIDKKTKD........................................---ITKLRKAIDE.Y---.-G.....IDLPMVTFLKDELRKKEKI........KDGKTRVIEANSVNDTVLFRSVFGNLFSAFHKN.pGIVTGSAVGCDP-EVF.WST-IPLMLD...GEC..LMAFDYSNYDGSLHPVWFKCL....SMLLED..IG...---.--.-.-FSSQ...........LI......NQICN...SKH....IYK.SKYY...........................EVEGGMPSGCAGTSIFNTIINN...III.R.TLVLD.AYKNIDLDK-................................-----L.KILA..YGDDVIFSYNFKLDMA....---VLAK.........................EGEK..YGLTITP..ADKSDV..FQE...LTY-KNVTFLK..RGF..RADERHs..........flIHPTFPVAEIHDSIRWT.KNP.SCMQ...........-----EHVLSLCHLMWHN...GRHAY.Q...EFIKGIRSVSAGRALYI--.........PAYEVLEHEW---yek.........................................................................................................
#=GR POLG_HRV8A/1721-2163        AS    ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
Q9WPZ7_GAVAU/4727-4980                 ......................................................................hcginklingikagfnpkg-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........---------------------------------..----------------.----------...KSK..WISQDYPKFDTCVDTM--AQY....SYIVNH..AYh.yTHT.NL.S.LIVRG...........LC......QLIANstsPII....YYN.SILI...........................RKLHGVSSGDGATAIKNSHCNS...VIT.N.IAFYR.QIVDNQVPEEyrglqstlyttli.....ngihskddaysthrAFEWNIsRCAT..LSDDTLAIINPDVLDL....--DQYLS.........................SYRT.lGGYEITN..------..---...-----------..---..------.............-----------------.---.----...........------------------...-----.-...-------------------.........-------------ekkifvrdepyeftfryffkedgfwynapliervfssivqcskatslcpeimagrllsil................................................
#=GR Q9WPZ7_GAVAU/4727-4980      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
POLG_EMCVR/1844-2290                   .........................................................................................IHVPRKTALRPTVARQVFQPA--.....YAPAVLSKFDPRTEADV.......----DEVAFSKHTSN--...-QES..L..PPVFRMVAKEYANRV.FTLL-..GKD.NGRL.....TVKQ.ALEGLEG......MDPMD.......RNTSPGLPYTAL......GMRRTDVVDWESAT........................................--LIPFAAERLRK.MNEG.DF.....SEVVYQTFLKDELRPIEKV........QAAKTRIVDVPPFEHCILGRQLLGKFASKFQTQ.pGLELGSAIGCDP-DVH.WTAFGVAMQG...FER..VYDVDYSNFDSTHSVAMFRLL....A---EE..FF..tPEN.GF.D.PLTRE...........YL......ESLAI...STH....AFE.EKRF...........................LITGGLPSGCAATSMLNTIMNN...III.R.AGLYL.TYKNFEFDD-................................-----V.KVLS..YGDDLLVATNYQLDFD....---KVRA.........................SLAK..TGYKITP..ANTTST..FPL...NSTLEDVVFLK..RKF..KKEGPL.............YRPVMNREALEAMLSYY.RPG.TLSE...........------KLTSITMLAVHS...GKQEY.D...RLFAPFREVGVVV------.........PSFESVEYRWR--sl..........................................................................................................
#=GR POLG_EMCVR/1844-2290        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
E9L812_MEGR1/2353-2811                 .......................................................................................pn-HIPRRSALKKSPAYGAFPVK--.....SEPAILSQKDKRCEVDL.......----DEVMFSKHVPDHE...GWPT..L..EPA----MAYVVEEL.MQKCG..FSK.DDPV.....PMWT.LEQAINGd...gvMEGID.......MGQSAGYPFSAQ.....gRSRRSFFEWNGEKW........................................--QATEELKKLVD.HALQ.HP.....DDYYYATFLKDELRPSEKV........KAGKTRLVDSDSLPRILAMRMVFGPLFEAMLRK.nGSEIHSAVGCNP-DVD.WTRFYYEMGPd.sFPY..CFDLDYSCFDSSEPKIAFLLM....AKYLEP..YF...---.--.Q.HDVTP...........FL......SAVAT...SKH....VYG.DKAY...........................EMEGGMPSGCVGTSMFNCINNS...AFI.V.SALIA.-LKISPDS--................................-----C.KWIC..YGDDVIISTDEKALSR....---RIAD.........................FYSR.nTNLKVTP..ACKSGD..FPE...ESTFYEVSFLK..RFF..VHDSHYp..........qlIHPYMPLEHLEQSSMWQ.TDG.EYQQ...........------KLDSLAQLAFHA...GGPDY.R...KFCDTIQRRCRSRGTEVYFr.......pFEY----------ymamwyah....................................................................................................
#=GR E9L812_MEGR1/2353-2811      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
R1AB_CVMA5/4977-5237                   ......................................................................iyaytkrnvlptltqmnlk-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.-------......-----.......------------......--------------........................................-------------.----.--.....------------------Ya.....isAKNRARTVAGVSILSTMTGRMFHQKCLKSIAAT..R-GVPVVIGTTKFYGG.WDDMLRRLIKdvdSPV..LMGWDYPKCDRAMPNILRIVSslvlARKHDS..CC..sHTD.RF.Y.RLANE...........CA......QVLS-...EIV....MCG.GCYY...........................VKPGGTSSGDATTAFANSVFNIcqaVSA.N.VCSLM.ACNGHKIEDLsirelqkrlysnvy...radhvdpafvseyyeFLNKHF.SMMI..LSDDGVVCYNSEFASK....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........------------------...-----.-...-------------------.........-------------gyianisafqqvly..............................................................................................
#=GR R1AB_CVMA5/4977-5237        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
B6VDX7_THCOV/4095-4376                 ..........................................nldksagypfnklgkarnyydmtyveqnqlfeytkrnvlptltqmnl-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.-------......-----.......------------......--------------........................................-------------.----.--.....---------KYAIS-----........AKDRARTVAGVSIISTMTNRQYHQKMLKSISLA..RNQ-TIVIGTTKFYGG.WDNMLRRLMDginNPI..LVGWDYPKCDRSMPNMLRIAA...sCLLARKhtCC..tQSQ.RF.Y.RLANE...........CC......QVL-S...EVV....VSG.NNLY...........................VKPGGTSSGDATTAYANSVFNI...LQV.V.SANVA.TFLSTSTSNHnsreiaslhrnlyediyrgdsnntsviedfyqHLRKYF.GLMI..LSDDG-----------....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........------------------...-----.-...-------------------.........-------------vacidseaaasgvvsnld..........................................................................................
#=GR B6VDX7_THCOV/4095-4376      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................................................................................................................................................................
A0A0B2UTK5_TOXCA/161-386               .................................................................................tqlalrad-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.----.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........--PKVRHVWGAPFHTILIEGTIAQPIIQNLQLK..NQ--PIFIGRDMFKEL.PATIHRMMRD...DNY..AYCVDLSSFDSSVNVWFIECF....FDFVKS..TVr.fPNI.FSsS.AVSYC...........RE......ELINT...PVV....MPD.GKLY...........................ICRTGVPSGSYFTQMIDSYVNL...ILL.R.AAQLY.HCERVLPTY-................................------.----..----------------....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........------------------...-----.-...-------------------.........-------------vlgddslfvyrdpnlldelenffakfnfvmnrkksivskdpgeiiflghnfygsrltrdd................................................
#=GC SS_cons                           ......................................................................................BHH-CHCHTTTCSSTTSHCCCCHCHHH..HHCCCHHHHHHHHHHHCTT.TTT...-HHHCCCHHHHHHHHCC...ECCH..H..HHHHHHHHHHHHHHC.CTTTT..CCC.CCTT.....HHCC.CHCCCCCTTSSS.CCHHH.BSTHHHHHHCCCGHTTHCEEEEEEEEECCHCCCCEEECHHHHHHHHHHHTTHHHH...SHHHHHHHHHT.SEEEEEEECTHCCCCCHHHSH.CCCC.CH.....HHHHHCHHHCCCHCCCTTTSTTB..EEESCTTSSCCCEEECTCCCCHHHHHCEECCHHHH.HHHHHCCCCCGGGSSSH.HHHHHHHCCC..HCCC..CCHTTCHHHHHHCCCHHHHHCH..HHHHHTC..CH..S-EC.XS.X.ETTEE...........XE......HHHHH...XSS....TXS.GGGSSSS.....................HHHHHHHHHHHHHSSXHHHHHHHHH...HHH.H.TSSSS.TTSTSTTSXHHHHHHHH.........................XXXXXX.XXXX..XXXXXXXXXXXXXXXX....-XXXXXX.........................XXXX..XXXXXXX..XXXXX-..XXX...XXXXXXXXXXX..XXX..XXXXXX.............XXXXXXXXXXXXXXXXX.XXX.XXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXX...XXXXX.X...XXXXXXXXXXXXXXXXX--.........XXXXXXXXXXXX-X...........................................................................................................
#=GC seq_cons                          ........................................................................................h.....p..h..s.h..............htPshLs..D.chtt.............t.h.h.tt.hp....................hhpthhtth.ht.h........t.h.....shpt.shpuh........hcsls.......hsoSsGhPa.........thp+pphht.tt.t..........................................h.t.h.ttht..htpt..........hhahshLKDElRsh-Kl........ptsKTRllpusshshslhsRhhhtshhsthhss..shptsssVGhss.shs.Wsphhpphtp...tph..hhshDYSsFDuohssthhpth....tplhpp..hh....tt.t..p.hhppt...........hh......phlss...sht....hhs.spla...........................phpGGhPSGsssTslhNolhN....lhh.p.suhhp.thpptths.......................................h.thls..YGDDslluhs.php.t.......pltp.........................hhpc..hGhphTs..scKss.........htshpchsFLK..RtF..h.ptth.............hhshhphpsl.p.l.ah.+ss.p..p.................pl.shhh.hhhp...G.p.a.p...phhp.h.th................................h...........................................................................................................
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