GenomeNet

Database: Pfam
Entry: RdRP_1
LinkDB: RdRP_1
Original site: RdRP_1 
#=GF ID   RdRP_1
#=GF AC   PF00680.18
#=GF DE   RNA dependent RNA polymerase
#=GF AU   Bateman A
#=GF SE   Pfam-B_32 (release 2.1)
#=GF GA   19.70 19.70;
#=GF TC   19.70 20.10;
#=GF NC   19.60 19.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   RNA-dependent_RNA_polymerase
#=GF DR   INTERPRO; IPR001205;
#=GF DR   SCOP; 1rdr; fa;
#=GF SQ   74
#=GS POL1_SDVS5/1437-1940        AC Q9WAL8.1
#=GS RDRP_BPPH6/19-638           AC P11124.3
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8S B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8O B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HHT P; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8O C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVL C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JLF B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8Y C; 18-630;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8W C; 18-630;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8M P; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8K B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8S A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI8 B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1WAC B; 18-635;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JLG A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8Y A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HHT R; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JLG B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVM C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI0 P; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVK C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8Q C; 18-630;
#=GS RDRP_BPPH6/19-638           DR PDB; 1WAC A; 18-635;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI0 R; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8F A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HHT Q; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4B02 B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVL E; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8W B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4B02 C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVK A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8K A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVM B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1WAC C; 18-635;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8Q A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JLF A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVN C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JL9 C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JL9 B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8Q B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8S C; 18-630;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HHS A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JLG C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JL9 A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVI B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVI A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8F B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVN A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVI C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 5FJ7 C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI1 A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI1 C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 5FJ6 A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HHS B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8M R; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8F C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 2JLF C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI8 A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI0 Q; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVJ A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8W A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8O A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVJ B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVJ C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8K C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8M Q; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4A8Y B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HHS C; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVM A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVK E; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1HI1 B; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVN E; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 4B02 A; 18-637;
#=GS RDRP_BPPH6/19-638           DR PDB; 1UVL A; 18-637;
#=GS POL1_CPMVS/1186-1687        AC P03600.1
#=GS POLG_BVY3/2632-3075         AC A0AUJ5.1
#=GS POLG_RGMVD/2263-2726        AC O11436.1
#=GS S4VD62_9PICO/1791-2229      AC S4VD62.1
#=GS A8D7N3_AQUAV/1584-2006      AC A8D7N3.1
#=GS X2L6K2_MOVA2/2087-2547      AC X2L6K2.1
#=GS POLG_POL1M/1765-2208        AC P03300.3
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLQ A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLS A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4V A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4W E; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 1RDR A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4S E; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLY A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4U A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLX A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4R0E A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 3OL7 E; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4T E; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLV A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4W A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 3OL7 I; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4S A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLR A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4T A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4U E; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLO A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 1RA7 A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4K4V E; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 1TQL A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 3OL7 A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 3OL7 M; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLW A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLP A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 1RA6 A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 1RAJ A; 70-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLT A; 17-460;
#=GS POLG_POL1M/1765-2208        DR PDB; 4NLU A; 17-460;
#=GS POL1_TOTV/1134-1642         AC A1XIP9.1
#=GS POLG_VESVA/1377-1852        AC Q9DUN3.1
#=GS B8XTP8_COSAA/1673-2117      AC B8XTP8.1
#=GS POL1_BBWVS/1175-1673        AC Q76L40.1
#=GS POLG_BSTV1/2291-2733        AC Q65730.1
#=GS X2FKI7_9PICO/2405-2861      AC X2FKI7.1
#=GS POL1_TORVR/1523-2014        AC P29150.2
#=GS U6MSS9_9EIME/8-212          AC U6MSS9.1
#=GS D9YV24_PASVA/1966-2425      AC D9YV24.1
#=GS POL1_CRLVP/1574-2081        AC Q6EWG9.1
#=GS F4MST3_9VIRU/206-406        AC F4MST3.1
#=GS M4PJD6_AVISV/1722-2154      AC M4PJD6.1
#=GS RPOA_EAVBU/2108-2368        AC P19811.3
#=GS POLG_AEVCA/1662-2124        AC Q9YLS4.1
#=GS POLG_PVYN/2293-2763         AC P18247.2
#=GS Q2HWK3_RSET1/1157-1599      AC Q2HWK3.1
#=GS POLG_BECN1/1159-1638        AC Q288N7.1
#=GS POLG_NVN68/1300-1767        AC Q83883.1
#=GS R1AB_BRV1/4879-5187         AC P0C6V8.1
#=GS POLG_HAVHM/1750-2215        AC P08617.1
#=GS Q7T7T5_HARNA/1275-1680      AC Q7T7T5.1
#=GS NS1AB_TASV1/1260-1545       AC Q9JH69.3
#=GS POLG_PYFV1/2270-2778        AC Q05057.1
#=GS Q66776_ERBV1/2133-2571      AC Q66776.1
#=GS U5XL86_9PICO/1898-2350      AC U5XL86.1
#=GS D9YV26_OSCV1/1798-2252      AC D9YV26.1
#=GS POLG_SVSAP/1226-1696        AC Q672I1.1
#=GS H6VBU5_CADIV/936-1394       AC H6VBU5.1
#=GS POLG_HPE2W/1722-2163        AC O73556.1
#=GS Q9WJ28_PTV1F/1795-2234      AC Q9WJ28.1
#=GS RDRP_HPBVH/194-421          AC Q50LE4.1
#=GS POLG_FCVUR/1263-1737        AC Q66914.1
#=GS C5MSH2_SALVA/1914-2363      AC C5MSH2.2
#=GS RDRP_CPVKS/22-375           AC O15925.1
#=GS Q9DLK1_FMDVP/1865-2317      AC Q9DLK1.1
#=GS Q8JJT0_PSV13/1874-2321      AC Q8JJT0.1
#=GS Q33DY4_AURN1/1024-1531      AC Q33DY4.1
#=GS RDRP_NODAM/531-717          AC Q9IMM4.1
#=GS Q0ZQM1_DHAV/1810-2228       AC Q0ZQM1.1
#=GS RPOA_PRRSL/2721-3033        AC Q04561.3
#=GS F4YYF3_HUNVO/1808-2238      AC F4YYF3.1
#=GS POLG_RHDVF/1279-1750        AC P27410.1
#=GS POLG_RHDVF/1279-1750        DR PDB; 1KHW B; 28-499;
#=GS POLG_RHDVF/1279-1750        DR PDB; 1KHV A; 28-499;
#=GS POLG_RHDVF/1279-1750        DR PDB; 1KHW A; 28-499;
#=GS POLG_RHDVF/1279-1750        DR PDB; 1KHV B; 28-499;
#=GS O70710_IFVS/2465-2952       AC O70710.1
#=GS A0A023T7J3_ROSV2/1995-2452  AC A0A023T7J3.1
#=GS POLN_CRPVC/1252-1761        AC Q9IJX4.1
#=GS I3VR62_MISV1/1826-2277      AC I3VR62.1
#=GS POLN_ABPVR/1406-1898        AC Q9DSN9.1
#=GS Q155Z9_SVV1/1731-2179       AC Q155Z9.1
#=GS R1AB_IBVB/4438-4717         AC P0C6Y1.1
#=GS A0A0N0DYT7_9TRYP/166-307    AC A0A0N0DYT7.1
#=GS POLG_RTSVA/2907-3417        AC Q83034.1
#=GS POL1_BAYMY/1633-2105        AC Q9YJW3.1
#=GS NS1AB_HASV1/1068-1326       AC Q67726.1
#=GS A0A084WAC7_ANOSI/151-300    AC A0A084WAC7.1
#=GS POLG_SPMMV/2668-3129        AC P89201.1
#=GS Q6YDQ7_9VIRU/112-400        AC Q6YDQ7.2
#=GS I6YQK4_PASI1/1692-2128      AC I6YQK4.1
#=GS I7C489_GALIV/2009-2471      AC I7C489.1
#=GS POLG_HRV8A/1721-2163        AC P07210.3
#=GS POLG_EMCVR/1844-2290        AC Q66765.1
#=GS Q9WPZ7_GAVAU/4727-4980      AC Q9WPZ7.3
#=GS E9L812_MEGR1/2353-2811      AC E9L812.1
#=GS R1AB_CVMA5/4977-5237        AC P0C6X9.1
#=GS B6VDX7_THCOV/4095-4376      AC B6VDX7.1
#=GS A0A0B2UTK5_TOXCA/161-386    AC A0A0B2UTK5.1
POL1_SDVS5/1437-1940                   .......................................................................................pral----RKTSIVPSIIHDNLWRKPE.....TEPTILGKIDDRSP-FP.......---YDPYATIGEKFVQEvgpIDLS..V..GSDASLVVANIGSSW.KAVGK..PQC.PT.VL.....TWEV.AINGDAAi...pyCERLP.......LSTSEGYPDSIQrn.fgeKGKKRFFDLKGENV........................................RVPTPALMEELEV.LERE.LQkeevcLTCINTACAKDEKTAPKKV.......rVQPKTRIFEILPFQINIIIRRYLMFWMQLLMVA..HDELPSKVGINVYSES.WDRLLGRHTR...LAN..HFTGDYSGFDTSTPRVLVYAI....IDKINE..LA..dDGE.VN.........Q.RTRRN...........II......R....FVLN...RYL....ISD.GVLY...........................EIHGGTPSGFAPTVMINSVVNE...FYL.K.W.SWIG.LLKEAGYANQat............................lyAFHEAT.EISL..YGDDNFVSVATPVASV...yNLTTISN.........................FLGR..IGVKLGD..GAKTGT..IKP...FIPLEEVDFLK..RQF..VADSGSt...........aILCPLKKISIEERLFYV.RGG.QDEI...........-AALELNIATALC...EAFFH...GKEYF.S...FLEGKIIEAMRKSGVALSRp.......lPTMESVRA-----wymsq.......................................................................................................
#=GR POL1_SDVS5/1437-1940        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
RDRP_BPPH6/19-638                      ........................................................................................fan-NIKAQQASKRSFKEGAIETYEGl..lsVDPRFLSFKN-ELSRYLtdhfpanVDEYGRVYGNGVRTNFF...GMRH..M..NGFPMIPATWPLASN.LKKRA..DAD.LA.DG.....PVSE.RDNLLFRaavrlmFSDLEpvplkirKGSSTCIPYFSNdmgtkiEIAERALEKAEEAGnlmlqgkfddayqlhqmggayyvvyraqstdaitldpktgKFVSKDRMVADFE.YAVT.GG.....EQGSLFAASKDASRLKEQYgidvpdgfFCERRRTAMGGPFALNAPIMAVAQPVRNKIYSK.yAYTFHHTTRLNKEEKV.KE--------...WSL..CVATDVSDHDTFWPGWLRDLIc..dELLNMG..YA..pWWV.KL.........F.ETSLK...........LP......V....YVGA...PAP....EQG.HTLLgdp.....................snpDLEVGLSSGQGATDLMGTLLMS...ITY.L.V.MQLD.HTAPHLNSRIkdmpsac..................rfldsywQGHEEI.RQIS..KSDDAILGWTKGRALVgghrLFEMLKEgkvnpsp...........ymkisyeHGGA.fLGDILLY..-DSRRE.pGSA...IFVGNINSMLN..NQF..SPEYGVq..........sgVRDRSKRKRPFPGLAWA.SMK.DTYGacpi...ysdvLEAIERCWWNAFG...ESYRAy.rEDMLK.RdtlELSRYVASMARQAGLAELTpidlevladPNKLQYKWTEADV............................................................................................................
#=GR RDRP_BPPH6/19-638           SS    ........................................................................................S-S-SHHHHHHHH--------EEETTE..ETT-HHHHHHHH-HHHHHHHHHS---B-TTS-BETTS--S-SG...GGGE..E..EEEE-BS-----SB-.HHHHH..HTT.--.SS.....-SSH.HHHHHHHHHHHHHHSS-----EEEETT----TTT----HHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH--SS-EEEEEEEESTS-EEEETTTTEEEE---EEE-HH.HHHT.TT.....SSS-EEE-B-BSTHHHHHH-----TT-EEEEEEEEEE--HHHHHHHHHHHHHHHHHHHHT.THHHH--SSHHHHHHHH.HT--------...-SE..EEEEEESSHHHHS-HHHHHHHH..HHHHHHT..--..HHHH.HH.........H.HHHTT...........--......E....EE--...SST....TB-.-EEES-T.....................TS---B-SS-TTSTTHHHHHHHHHH...HHH.H.H.HHHH.HT-GGGGGG-SSHHHHH..................HHHHHHHTT-SSE.EEEE..ETTEEEEEE-SSTHHHHHHHHHHHHHHTSS-S-S...........SS-EEE-SS-E.ETTEEEEE..--TT-S.GGGS...EEEE-HHHHHH..HHH..SSSS---..........TTSSSGGGSSSS-GGGHHH.HHH.HHHTTSTT...HHHHHHHHHHHHHHHHS...S-HHHH.HHHHHH.HHHHHHHTTSSSSTTTSTSTTS-HHHHHHHHSGGGGTTTS-GGGS............................................................................................................
#=GR RDRP_BPPH6/19-638           pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POL1_CPMVS/1186-1687                   ..........................................................................................i-PLPTKTALVETPSEWHLDTPCD.....KVPSILVPTDPRIPAQHegy.dpaKSGVSKYSQPMSALDPE...LLGE..V..ANDVLELWHDCAVD-.-----..WDD.FG.EV.....SLEE.ALNGCEGv...eyMERIP.......LATSEGFPHILSrn.gkeKGKRRFVQGDDCVVsl....................................ipGTTVAKAYEELEA.SAHR.FV.....PALVGIECPKDEKLPMRKV.......fDKPKTRCFTILPMEYNLVVRRKFLNFVRFIMAN..RHRLSCQVGINPYSME.WSRLAARMKE..kGND..VLCCDYSSFDGLLSKQVMDVI....ASMINE..LC..gGED.QL.........K.NARRN...........LL......M....ACCS...RLA....ICK.NTVW...........................RVECGIPSGFPMTVIVNSIFNE...ILI.R.Y.HYKK.LMREQQAPELm.............................vqSFDKLI.GLVT..YGDDNLISVNAVVTPY...fDGKKLKQ.........................SLAQ..GGVTITD.gKDKTSL..ELP...FRRLEECDFLK..RTF.vQRSSTI.............WDAPEDKASLWSQLHYV.NCN.NCEK...........EVAYLTNVVNVLR...ELYMH...SPREA.T...EFRRKVLKKVSWITSGDL-.........PTLAQLQEFYEYQ............................................................................................................
#=GR POL1_CPMVS/1186-1687        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_BVY3/2632-3075                    ........................................................................ntrhtyegesqpfmaylre-----------------------.....-CGDAETFFRPLLSHYI.......PSNLNGDAFKKDFFKYG...KPVP..V..GLVHGPSFKIASDRV.IKRFErvGYE.RH.SI.....PFEF.DAEAI--......RDDLN.......KHAAMGAQYV--......-GKKEQHLDGISEE........................................QFCDEFVASCCRL.ANNC.DG.....---VWKGSLKAELRSKEKV........QENKTRVFTSAPYDVLLGGKACVMHFNKKFYAN..NTKGPWTVGINKLGLG.WHRLLKSLPE...GFV..YGTGDGSQFDSSLTPLLINEV....CRIRMY..FMq.dDEL.GQ.........A.MLRGL...........YR......Q....IIWT...LIS....MPD.GSVV...........................RKAKGNPSGQPSTVDDNTIMVM...LAV.E.Y.VFAY.LGITQEEMD-................................---TIF.KYYA..NGDDLIFAIHPDRESI....-LNEFTH.........................LFAH..LGLNYIF..EDRTRN..---...---RAELEYMS..LTG..IEREGF.............YIPKLSRERISSIVQWR.RKG.DTRA...........----MFDALNAAI...--LESw.gYDDLT.Y...WLRKYYEWL----------.........-------------iinrydidl...................................................................................................
#=GR POLG_BVY3/2632-3075         pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_RGMVD/2263-2726                   .........................................................................................gn-------LITKHVIKGKSPTFDLf..lsVDAQASDFFKPLMGDYA.......PSRLNREAFVKDITKYD...TEIP..I..GNLSITDFENAVEDT.YYILK..DSG.IE.QC.....NYIT.DAIPI--......FDSMN.......MKAATGALY---......GGKKKDYFENYTDD........................................---MKQNILKESY.IRLR.EG.....KMGIWNGSLKAELRSKEKV........EANKTRVFTAAPLDTLLAGKGCVDDFNNQFYAA..HLKGPWTVGITKFFGR.WNDFLSELPP...GWD..YFDADGSRFDSSLTPFLLNAV....LNIRKK..FMi.nWAF.GQ.........R.CLGNL...........YT......E....IIYT...PIA....TPD.GSVV...........................KKMRGNNSGQPSTVVDNTIMVI...IAM.Q.Y.AISK.AEFPAGRLR-................................---DQI.RYFA..NGDDLVVAVEPSLSDK....-ISSFSA.........................SFAE..LGLSYDF..SNKVND..---...---RSELQFMS..HTG..KLIDGM.............YIPMLERERICAILEWS.RSD.EPQF...........------QLDAISA...AMIEAw.gDDELL.Y...QIRRYYSWLLEQEPYKSIAel....ghaPYLAEAA------lkalyt......................................................................................................
#=GR POLG_RGMVD/2263-2726        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
S4VD62_9PICO/1791-2229                 ..........................................................................................y------TKYSPSPVSLVIRSE--.....LEPAVLSAHDNRLEVKR.......--ESN-AMFLLEKTQKY...D-TN..V..TVPRPLLLQTLATEY.GTHLR..NLM.STlAS.....PASI.EEAVFDT......VCPMD.......HRASAG-PH-YP......GVKRSELIDFQRRTi......................................sDRLREDVVALRAA.FARG.DN.....VYLPFSSFLKDELRPKPKV........RNGDTRVVECSSLHYTVAFRMQFLSVLRMMYGS.dPNQTGLAPGMNV-YLE.FST---MVSN..lYPN..NLCLDFKKYDSRLPSDVMSVA....ADLFAS..LT...---.ED.........P.VVSRR...........YF......D....PIID...SIH....EVG.PYRV...........................EVHGGMPSGCAVTTLLNSVCNV...LMC.S.Y.AVLL.QD-----PD-................................---MDF.QVVA..YGDDNIVSTAEPLDVP....---AFRS.........................VLAS.dFGMVTTS..ADKSEE..CYQ...VPP-EQVDFLK..RRL..RWTSDFp...........vPVPVLPLDSMLSRLCWC.KGP.HEFR...........-----DQLISFSY...ELGFY...GQEVY.H...RVFSA--------------.........-------------llphatlppwsqtl..............................................................................................
#=GR S4VD62_9PICO/1791-2229      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
A8D7N3_AQUAV/1584-2006                 ......................................................................................lhrsi-----RTKFRPTDLQNKIVPE--.....LEPAVLSASDPRLKVQI.......-----DGDLPDHLCK-K...WKVN..T..KVSRPDVLELVVNEY.ISSLD..CEQ.FE.PV.....TLNE.AINSS--......ESPLN.......FNGTAGAKYP--......GMNRRQLLLPLNPQ........................................--VRDDVVKLAGD.VGNG.TA.....-TVVFETFMKDELRPKEKI........ESGKTRIVESCPLDYLLLYRMVMLKSMIWWYNS.dCIKTGVAPGMNVYT--.--DFVPMVKQ..fKKI..KYCLDFSAYDSTLSDEILAAG...vEVLACT..S-...---.AV.........P.SYVRK...........LH......A....PIIC...SHH....WHN.NVVD...........................LVLGGMPSGAPCTSVLNSIVNV...LMA.R.Y.IC--.ALMDIDYPV-................................------.-MVA..YGDDNVVSFDEEIDIE....---RMVS.........................LYKT.eFGVTATN..HDKTPV..---...PRPMANPVFLK..RRLrfNPDLNI.............QFPVLPLGEMIDRMCWT.RGP.EHLS...........-----DQTFSFAI...ELAGY...GKQVY.T...HI-----------------.........-------------rdaffpymi...................................................................................................
#=GR A8D7N3_AQUAV/1584-2006      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
X2L6K2_MOVA2/2087-2547                 ..........................................................................................v-AVNRKTQIKKSPLFDVFKPE--.....AGTAVLSQYDRRLADGV.......--VLDEALFEKHVSD--...-MEK..L..PKEFEIACDMYANEL.FSKI-..GTN.NG.VV.....SMYR.AMNG-DG.....iSEAMD.......MSKAVGYPYCLE......SIHRVDLIETKETPeg....................................kvYFPTKRLEEETRK.FFYG.EE.....-KPKFVTFLKDEVRSNEKI........KQGKTRIVDASPFPYAIAGRMVMQNFMSNMMAH.nGIETGSAVGCDP-DVA.WTRYFFELTD...-RY..VFDLDYKAFDSTHPTAIFNLL....A---DR..FF..lPKYgFD.........Q.EAVRI...........FL......N....GLSD...SDH....VYE.SKHF...........................RIRGGLPSGCPCTSILNTVINN...IIV.R.A.AMLG.AYQVDTIDF-................................---QNF.KMLA..YGDDVVYSTPQPIKPK....---DLAD.........................WLHS.nTNYKVTP..ASKAGE..FPD...ESTIWDVTFLK..RAF..IPDENHg..........qlIKPVMSMSNLKQMLSFM.RPG.TFPD...........------KVRSVAG...LAVHC...SEEDY.N...ELADAIESTVP--------.........-------------gvampaysymkacwya............................................................................................
#=GR X2L6K2_MOVA2/2087-2547      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_POL1M/1765-2208                   ..........................................................................................i-NAPSKTKLEPSAFHYVFEGV--.....KEPAVLTKNDPRLKTDF.......----EEAIFSKYVGN--...KITE..V..DEYMKEAVDHYAGQL.MSL--..DIN.TE.QM.....CLED.AMYGTDG......LEALD.......LSTSAGYPYVAM......GKKKRDILNKQTRD........................................---TKEMQKLLDT.Y---.-G.....INLPLVTYVKDELRSKTKV........EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKN.pGVITGSAVGCDP-DLF.WSKIPVLMEE...--K..LFAFDYTGYDASLSPAWFEAL....KMVLEK..IG...---.--.........F.GDRVD...........YI......D....YLNH...SHH....LYK.NKTY...........................CVKGGMPSGCSGTSIFNSMINN...LII.R.T.LLLK.TYKGIDLDH-................................-----L.KMIA..YGDDVIASYPHEVDAS....---LLAQ.........................SGKD..YGLTMTP..ADKSAT..FET...VTW-ENVTFLK..RFF..RADEKYp..........flIHPVMPMKEIHESIRWT.KDP.RNTQ...........-----DHVRSLCL...LAWHN...GEEEY.N...KFLAKIRSVPIGR--ALLL.........PEYSTLYRRWLD-s...........................................................................................................
#=GR POLG_POL1M/1765-2208        SS    ..........................................................................................B-T--SSGS-EE-TTTTTS--S--.....EEE---STT-TT-SS-H.......----HHHHHTT------...S-SS..-..-HHHHHHHHHHHHHH.HTT--..T--.-S.--.....-HHH.HHHEBTT......BE---.......TTS---TTGGGT......T--GGGT--TTTT-........................................----HHHHHHHHH.H---.--.....SS--EEEEE---EEEHHHH........HTT---EEEE--HHHHHHHHHHHHHHHHHHHH-.TBTTTTB-TT--H-HHH.TTTHHHHS-S...--E..EEEEEESSHHHH--HHHHHHH....HHHHHH..TT...---.--.........T.GGGGH...........HH......H....HHHE...EEE....EET.TEEE...........................EEESS--TTSTTHHHHHHHHHH...HHH.H.H.HHHH.HSTT--GGG-................................------.EEEE..ETTEEEEEESS---HH....---HHHH.........................HHHT..TT-EEEE..GGG-SS..---...B-T-TT-EBTT..BEE..EE-SSST..........TSEEEE--HHHHHHHHTEE.SSG.GGHH...........-----HHHHHHHH...HHGGG...-HHHH.H...HHHHHHTTSHHHH--TS--.........--HHHHHHHHHH-T...........................................................................................................
#=GR POLG_POL1M/1765-2208        AS    ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POL1_TOTV/1134-1642                    ..tvphkttlrrsglfeafgpaetapsiisasdkrgegfdpyvagiqkynetaqnfdediarlayeglrqailpvlhsqrvpfgkpvtqne-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....--DV.VLNGVDGf...dyFDGME.......LSTSCGYPYN-Kl...gmGTSKREFVEPSGDGdrvq................................lkrtTPIFDDWEALDVE.IRKG.NF.....VELVTTQCAKDERLPLEKV.......fGKRKTRLFEILPFHYNMLVRKYFLDFSASLMAS..HNALPCKVGINPGGIE.WTLLANGFRA..vSDT..GFSADYSSFDGRAPIFAFQWF....CDLVDD..YYgspPGS.PD.........S.NARHV...........LL......M....MASC...HYT....ICE.NKVF...........................RLVGGMPSGFALTVIFNSLLNE...FYM.R.Y.AFIS.LLRRPHIAAQaig..........................ckpSDFNKL.FVAV..YGDDNLVAVPMELHWY....TLPAIAQ.........................ELEM..VNVIIKN.gIDKNMDvsSSK...MLDLSELTFLS..RGF..KRHRLG............yVQAPLKWVSIIEPMYWI.RPSvGCPD...........ALAMLENIDTGVR...EAFHH...GPQVF.E...KLVTDVQNALKERCFPATT........fPTYFELEQDWL--v...........................................................................................................
#=GR POL1_TOTV/1134-1642         pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_VESVA/1377-1852                   ........................................................................................imk---GTRLHVSPAHVDDYEECT--.....HQPASLGAGDPRCPISL.......------TGIMVNNLQPY...TEAS..P..GPD-TATLNRVSKML.TSHME..GYV.PK.VH.....KTEE.DSISA--......FYMLN.......HDTLCG-PYI--......GARKKDHVKDGVLD........................................KNLLDLLSSKWNR.AKLG.LA.....LPHEYALGLKDELRPKDKV........AVGKRRLIWGCDVGVSTVCAAAFKRVSESIMAN..HALGFIQVGINMDGPA.VEDLFKRLER..pKHD..RYCVDYSKWDSTQPPKVTSQS....IDILRH..FT...--D.KS.........P.IVDSA...........CA......T....LKSN...PIG....IFN.GVAF...........................KVAGGLPSGMPLTSIINSLNHC...LMV.G.S.AVVK.ALEDSGVRVT...............................wNIFDSM.DLFT..YGDDGVYIVPPLISSV....-MPKVFA.........................NLRQ..FGLKPTR..TDKSDA.eITP...IPADEPVEFLK..RTI..VRTENG.............VRALLDRSSIIRQFYYI.KAE.NTENwtvp..pkridTPSRGQQLYNACL...YASQH...GEEFYtS...KIVPLIERAVKLEGLHIEV.........PEFHQAV------aayn........................................................................................................
#=GR POLG_VESVA/1377-1852        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
B8XTP8_COSAA/1673-2117                 ......................................................................................vhvpr-----TSKLKRTNATYPAT--EK.....YGPAALSRYDPRLNEGV.......--NLDEVIFSKHTQNTL...V--E..K..GSTFRSALDMAAEIY.GEKFR..GND.FS.PL.....SVED.AILGIPG......LDRLD.......PNTASGLPY---......TKTRRQMIDFNTGQ........................................-ILDDTLKCRLGQwLAGR.PP.....QEVHYQTFLKDEIRPIEKV........KAGKTRIIDVPPLDHVIAFRMLFGRFIAHYHLN.fGFKTGSAIGCDP-DVA.WASFGFELSG...FPY..LYDFDYSNFDASHSTSIFEIL....E---QK..FF..sPEL.GF.........D.PRCSL...........LL......K....SLAV...STH....CYE.NKRL...........................QIAGGLPSGTAGTSVLNTVINN...IIF.H.G.ALYH.TYTNFERDD-................................-----I.SMLA..YGDDIVVASKFELDLV....---MVKA.........................FMNR..IGYKITP..ADKSDE..FRP...KCM-DDICFLK..RRF..VKVAGV.............WAPVMETENLEAMLSWY.KPG.TLNE...........------KLQSVSR...LAHFS...GRDVY.D...HLFKPFI------------.........-------------rdgfdvtpwkqlhle.............................................................................................
#=GR B8XTP8_COSAA/1673-2117      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POL1_BBWVS/1175-1673                   ........................................................................................vgs---GGKTSFLETPIEWQLNRPCG.....KIPSILVKGDVRLAGTE.......--NADYDPFAVGMTKYA...KEAG..PfePNGLDRVCESIAETW.HDASD..GFE.FG.PV.....DLEA.ALNGIENm...eyFDALV.......LSTSEGYPYRLDrk..pgEKGKARYVEGEPGNle....................................itDERILADIHWFEE.ISKT.QV.....PDLYCIECVKDERLPVRKV.......iKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKR..RDVLPCQVGINPYSRQ.WGKVADRLLE..kGNS..ILCCDYSRFDGFLPKCIMVKI....AEMFSN..IV..gETG.AE.........R.EQTKN...........LM......L....ACCS...RYA....ICG.RVLY...........................RVENGIPSGFPLTVIVNSILNE...ILI.K.Y.AYWK.CFETESLIRD................................HFDTYV.AMVV..YGDDNLISVSEAISSK...fNGNFLVN.........................FMCN..LGIKVTD.gVDKTKV..GIE...FRTIEDCDFLK..RKF..KENADG............tWSGVMAEEHLWPQLHFV.KAK.KVEM...........SEAYISNCNNILR...ELWLG...SPEKA.A...AFRREVISKLKWVEPQRL-.........LTISQ--------valfhneqm...................................................................................................
#=GR POL1_BBWVS/1175-1673        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_BSTV1/2291-2733                   ....................................................................................arsenrl--------SRQHVISGQRESF-I.....HFVEASSKWRPLITPMLgr...lqPSALNREAYYKDVLKYD...KPIR..L..GTVHEEAFQSAVINV.IRILE..NAG.FE.RG.....GVKA.CFDY--Gk....iFNDLN.......LDAAMGALY---......AGKKKDYFVEATDE........................................EIEEMFLRSAGKI.CANG.H-.....--GVWSALLKAELRPAEKV........AANKTRTFTSAPIDILFGAKAVVDDFNKQFYKR..HLLGPWTVGINKFNKG.WDLLARSLMR...YEW..FIDADGSQFDSSITPLLMNAV....LTIRLY..FM..eRDD.IT.........ElMLRNL...........YT......Q....IIST...CML....AED.GLIV...........................QKHRGNNSGQPSTVVDNTLCLM...IAM.E.Y.ARQR.AISDGHLNM-................................----QM.RYVC..NGDDLLINANEEAKDV....VQGKYEQ.........................YIKE..LELNYCF..DDAFQ-..---...--SIEGVEFMS..HKF..MLRNGI.............YIPKLARHRIVAILEWQ.RSA.EPQA...........---IKSAILAACV...EAFG-...-----.-...-------------------.........-------------yddltelireyaisle............................................................................................
#=GR POLG_BSTV1/2291-2733        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
X2FKI7_9PICO/2405-2861                 ..........................................................................................p-HVPRRSRLIKSPAYGAFPVT--.....KEPAVLSKYDSRTDKDV.......----DEVAFSKQGGG--...----..D..LDEPWPSLIPATKLY.FSHCN..FSK.LR.TL.....TMLE.AINGTPL......LDGID.......MNQSPGYPWC-L......TRNRRSLFDIGEDG........................................--LYHPCPELYQE.IEAClHN.....PDYFYTTFLKDELRGVDKV........AAAKTRLIEAAPIHAIIAGRMLFGGLFEVMHSQ..PGSYGSAVGCDP-DYH.WTPFYHNFLD...YRE..VWALDYSNFDSTIPSVIFKLI...gEELAKI..IE..lPPS.IP.........P.GSIQK...........YV......Q....SIYL...SKH....VFG.DHWY...........................TMKGGNPSGCVGTSIFNSMVNN...ISL.L.S.AMLT.HP----DFD-................................--SSAY.RILC..YGDDVIYATVPSIHPS....FIADF--.........................-YHK.hTLFKVTP..ADKGNT..FPE...TSSIHDVTFLK..RHF..VPDERFp..........tyIHPVISPETYQQSVMWT.RGG.PFQD...........------VITSLCY...LAHHA...GPNNY.Q...DWCDTVRAQCLKNGFEPTF.........IPYEVLQYRWLA-m...........................................................................................................
#=GR X2FKI7_9PICO/2405-2861      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POL1_TORVR/1523-2014                   ..........................................................................tklelvdeaflvpspve----------------------V.....KIPSILSKDDPRIPEAY.......----KGYDPLGDAMEKF...Y-EP..M..LDLDEDVLESVMADM.YDEFY..DC-.QT.TL.....RIMS.DDEVINGsdfgfnIEAVV.......KGTSEGYPFVLSrr.pgeKGKARFLEELEPQPgdtkp.............................kyklvvGTEVHSAMVAMEQ.QART.EV.....PLLIGMDVPKDERLKPSKV.......lEKPKTRTFVVLPMHYNLLLRKYVGILCSSMQVN..RHRLACAVGTNPYSRD.WTDIYQRLAE..kNSV..ALNCDYSRFDGLLNYQAYVHI....VNFINK..LY...-ND.EH.........S.IVRGN...........LL......M....AMYG...RWS....VCG.QRVF...........................EVRAGMPSGCALTVIINSLFNE...MLI.R.Y.VY-R.ITVPRPLVN-................................NFKQEV.CLIV..YGDDNLISIKPDTMKY...fNGEQIKT.........................ILAK..YKVTITD.gSDKNSP..VLR...AKPLKQLDFLK..RGF..RVESDG............rVLAPLDLQAIYSSLYYI.NPQ.GNIL...........-KSLFLNAQVALR...ELYLH...GDVEQfT...AVRNF--------------.........-------------yvnqiggnflslpqwrhcasfhde....................................................................................
#=GR POL1_TORVR/1523-2014        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
U6MSS9_9EIME/8-212                     ............................................................pekmaqgkaltravsvgepsehylfyplynp-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........---------------------LFRRITQLVSAS..NVNAVIQIGVRKNSRD.WPRLWERFSQ...YDY..ILTTDWSGFDTSISPELLRLA....WDILVK..AV...--D.LH.........R.EEDRI...........LI......A....NLTN..lYEM....NFV.GGIMhha....................gytlAKEGGIPSGSILTSIVGSVVNY...IVL.K.A.LLSD.L----PNIK-................................----AF.EISV..YGDDAIVGLNTEDDLV....-NPKIKR.........................AF--..-------..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------lhrl........................................................................................................
#=GR U6MSS9_9EIME/8-212          pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
D9YV24_PASVA/1966-2425                 ..........................................................................................v-HIPRRSRLRPSPAMGAFPVE--.....KIPAALSSHDKRLPEGV.......--DVDTVAFSKQNR---...---G..D..LDKPWPTLPVAVDLY.FSQCD..FPK.LR.ML.....SMDE.AINGTPL......LDGLD.......MKQSAGYPW-SL......TTNRRSLFTQDPET........................................GKYKPVPELEEAV.LACL.EN.....PDYFYTTMLKDELRPTEKA........LAGKTRLIEAAPIHAIIAGRMLLGGLFEHMHAR..PGQYGSAVGCDP-DYH.WTPFFHSFDR...FAE..VWALDYSCFDSTLPSCAFDLI...aAKLSQI..IT..pLPG.IA.........E.DAIVK...........YI......R....SISV...SKH....VFG.DRAY...........................LMTGGNPSGCVGTSILNSMINN...SVL.I.S.AFLT.HPQFNPAEM-................................------.RILT..YGDDVLYATTPTIHPS....---FVKS.........................FFDQ.nTTLIVTP..ATKAGD..FPD...HSTIWDVTFLK..RWF..VPDEERp..........wyIHPVIEPATYEQSVMWT.RGG.DFQD...........------VVTSLSF...LAHHA...GPTNY.D...AWATKVREQAARKGLL---.........PNILPYS------ylhhrwlql...................................................................................................
#=GR D9YV24_PASVA/1966-2425      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POL1_CRLVP/1574-2081                   .........................................................................................fl----EKTSLIPSLISTSIDVERT.....TEPAILSQRDKRLKDSI.......--NPEFDVFLEGMKKYA...VEAH..S..LDEDLEVFEDALDRV.FLEIP..EHA.CE.DL.....TNDQ.VCNGIEDd...pyAEGIV.......MQTAEGFPFCTQrp..agASGKSWLFAGAPGDwh...................................ivpGSLLANEMHKKEV.APSRgLF.....EPLIGIDFPKDEKVDSSKV.......yIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQ..HNTIPVKVGIDCLSNE.WSILYHQLRS..kGTN..WFNGDYSRFDGITPRNVLQGI...vKRINKF..YN...NKN.SL.........A.ITDSNlsinsdlarslLT......D....MAST...RYG....LTN.GDLW...........................YVTSGIPSGFPLTVIVNSLVNN...FFI.H.F.SYIK.LMKREELNSLyp............................lhSFRQMV.AYAT..YGDDNLVSVNDVITEK...fNLVKIAD.........................LLAE..HGVTLKN.gADKNEE.iLSP...FYPLEKVDFLK..RKF..VHYQGH.............VVAPLNPVNITERLHWI.RKG.LGEA...........-DATLENCSSAAF...EALFH...GRCYY.D...TLVAKIYKACAASKLSIQL.........PTYN---------dalaif......................................................................................................
#=GR POL1_CRLVP/1574-2081        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
F4MST3_9VIRU/206-406                   .................................................................................afkrmdtfyf-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........---------------------------------..-------TGKDP-TIY.VPRILHKMST..nEGW..FICLDWKAFDASVQLWEIDHA....FNCIQQ..LLa.fPTE.LS.........R.LAFLF...........TR......E...sFKQR...KLA....DPN.GILW...........................MRKGGIPSGSYYTNIIGSVINY...NRI.E.Y.VC-K.RLGLQKTSC-................................------.--YV..QGDDSLIHITGDAKPD....-LTQLQM.........................LGEQ..FGWTLNI..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------pkcsltqdsqlvtflgrsqmhqlnirerlkvlrlm.........................................................................
#=GR F4MST3_9VIRU/206-406        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
M4PJD6_AVISV/1722-2154                 ..................................................................................qprrseiyp--------------SPANDGTSS.....VEPPVLSNRDKRLEEPI.......------DDITKHNADRH...KMNR..F..NPP-MDAFQVAKANV.ISELA..SI-.VA.PC.....YHMT.YDQVVDS.....sLLPID.......WTTSPGLEF--K......GKTKKQLIDDPAFK........................................ERVMK-LYKS-FA.GGNS.AP.....PQVKYTTYLKDEVRSKEKV........KKGATRTITASSFDYTIACRMIFGNIFRQLFGN..GLPAGFAPGMNP-YTQ.FDELYDSC--...RLN..VICLDYSKFDASLSKELMEHA....IEVVAC..FS...--E.DP.........M.SVIRA...........FQ......P....TLIS...Q-E....RVS.DELW...........................EVRGSMPSGSPWTTMINTICNL...LMC.K.T.YLLD.MGHDITKTY-................................------.-VVC..YGDDCVISVDQCHRLE....---GIEQ.........................WFMD.kFGATVTP..EDKSGK..IKW...RFK-NKLKFLK..RTP..MQLDWLp...........kIVGALDIDSMMDRIQWT.KGH.FQEQ...........-------LNCFYY...ELALH...GEDTY.N...EARRSI-------------.........-------------afrcpelvhptyhca.............................................................................................
#=GR M4PJD6_AVISV/1722-2154      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
RPOA_EAVBU/2108-2368                   ...................................................................................fdpipapd-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........---------------------------------..----------------.----------...-KY..CLETDLESCDRSTPALVRWFA....TNLIFE..LA...--G.QP.........E.LVHSY...........VL......N....-CCH...DLV....VAG.SVAF...........................TKRGGLSSGDPITSISNTIYSL...VLY.T.Q.HMLL.CGLEGYFPEIaekyld....................gslelrDMFKYV.RVYI..YSDDVVLTTPNQHYAA....SFDRWVP.........................HLQA.lLGFKVDP..-KKTVN..---...---TSSPSFLG..CRF..KQVDGK............cYLASLQDRVTRSLLYHI.GAK.NPSE...........---YYEAAVSIFK...DSIIC..cDEDWW.T...DLHRRISGAARTDGVEF--.........PTIEML-------tsfrtkq.....................................................................................................
#=GR RPOA_EAVBU/2108-2368        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_AEVCA/1662-2124                   .........................................................................................is--VGSKTKYHKSPLYDFCPQEVI.....KCPTKLFYQG-EIDVMQ.......------VMLAKYSSPIV...SEPL..G..YAT---VVEAYTNRM.VSF--..FSE.PR.QL.....TYDE.CINGIEG......LDAID.......LKTSAGFPYNTL......GLRKSDLIINGKMA........................................QRLQQDVEKMEED.LHMN.RS.....IQVVFTTCAKDELRPLSKV........MLGKTRAIEACPVSFTILFRRYLGYALAQIQSH.pGFHTGIAVGVDP-DQD.WHCMWYSIVT..qCDL..VVGLDFSNYDASLSPFMIYHA....GRVLGQ..IC...-GL.DP.........R.LVD-R...........IM......E....PIVN...SVH....QLG.SMRY...........................YVHGSMPSGTPATSVLNSIINV...VNI.-.C.HVLC.ALEKISVFE-................................-VFKLF.KILT..YGDDVLLCIKKEYLDQk.sfPLSSFVQ.........................GLEE..LGLSPTG..ADKMEV..--K...VTPVHKMSFLK..RTF.yVDEWSI.............CHPRISEETVYSMLAWK.SDN.ASMK...........-----DLIETSIW...FMFHH...GPRKY.V...RFCTWLRGVLCRVGIGLYI.........PTYKELEVRY---drl.........................................................................................................
#=GR POLG_AEVCA/1662-2124        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_PVYN/2293-2763                    ..........................................................................................v-ATMKSQLVTKHVVKGECRHFTEfltvdAEAEAEAFFRPLMDAYG.......KSLLNRDAYIKDIMKYS...KPID..V..GVVDRMHLRKPSIGL.SSTCN..VHG.FK.KC.....AYVT.DEQEI--......FKALN.......MKAAVGASY---......GCKKKDYFEHFTDA........................................DKEEIVMQSCLRL.YKGL.LG.....---IWNGSLKAELRCKEKI........LANKTRTFTAAPLDTLLGGKVCVDDFNNQFYSK..NIECCWTVGMTKFYGG.WDKLLRRLPE...NWV..YCDADGSQFDSSLTPYLINAV....LTIRST..YMe.dWDV.GL.........Q.MLRNL...........YT......E....IVYT...PIS....TPD.GTIV...........................KKFRGNNSGQPSTVVDNSLMVV...LAM.H.Y.ALIK.ECVEFEEID-................................---STC.VFFV..NGDDLLIAVNPEKESI....-LDRMSQ.........................HFSD..LGLNYDF..SSRTRR..---...---KEELWFMS..HRG..LLIEGM.............YVPKLEEERIVSILQWD.RAD.LPEH...........------RLEAICA...AMIESw.gYSELT.H...QIRRFYSWLLQQQPFATIAqe....gkaPYIASMALRKLYM............................................................................................................
#=GR POLG_PVYN/2293-2763         pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
Q2HWK3_RSET1/1157-1599                 ....................................................................lvktntgksllakvrilddietv-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.--SGIDGm...kfVDAMK.......PTTSMGWPV---......NKAKTTFLTDLVYDpeehktt.........................vcprvlddETLALARKARLAW.LDDK.RS.....-YDIFKTCTKDE---PTKI........TKDKVRCFQASPVSLQFNIRKYFLTLCHFLSSA..SLVSECAVGINSQGRG.WHELNQHMIKy.gKNR..IVAGDFKAYDQHMSARMTLMAa.kvFEYIAG..LAg.yTEE.EL.........K.IMRGA...........ST......-....EVSY...PVM....SLN.GELI...........................QLYGSNPSGQNLTVYTNSIVNS...LYH.R.C.AFRK.IYPNFSGRY-................................--RDAV.ALMT..YGDDVKMSVSPKFPDY....NHTRIQS.........................EFNK..QGIEYTM..AEKEAA..SVP...FIQHEDADFLK..RKS..RWEPSYsytegdgtinkgmWLAMLDEESIFKSLHAN.LAS.KVKS..........pEEVSVQCIEGALR...EWWFY...GEETF.N...FRHAQMKEVVS--------.........-------------rlgwtnfmstqfwdtysaresrwleq..................................................................................
#=GR Q2HWK3_RSET1/1157-1599      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_BECN1/1159-1638                   ........................................................................................lph---GTKYSISPGMREEAHKCT--.....HQPASLGRNDPRCNQTQ.......------VAMVVKALTPY...TSAP..A..IEKLDPCMVAAITEV.RTAIQ..SLT.PK.GG.....FRPL.TFAAA--......WQSLD.......LSTSAG-AL-AP......GKTKRDLCDPDTGMp......................................aGKYREMLLAAWSR.AGTG.TP.....LDHTYIVALKDELRPVEKV........AEGKRRLIWGADARVALIASAALTPVANALKTV..TNLLPIQVGVDPSSANcVSSWVGRLQR...HDH..CLELDYSKWDSTMSPVIINIA....IDILCN..TC...GSD.SL.........R.--MAV...........AQ......T....LKSR...PTA....LVE.GVSV...........................PTKSGLPSGMPFTSQINSIVHW...ILW.S.A.TVRK.CSLPLHIG--................................SVNELA.PFLT..YGDDGLYTIPSHLTKS....-IDEIIS.........................TLKG..YGLSPTA..PDKGAN.vEIKrtsFTYLSGPVFLK..RRI..VLTPGG.............HRALLDLTSLARQPVWV.NGP.RRSVwnheaqpieidAETRTIQLQNVLI...ELAWH...QPQDF.D...HVLALVVKSAEASGLTI--.........PRYSQEE------araiy.......................................................................................................
#=GR POLG_BECN1/1159-1638        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_NVN68/1300-1767                   ..........................................................................................p-ALSTKTKFWRSSPEPLPPGV--.....YEPAYLGGKDPRVQNGP.......----SLQQVLRDQLKPF...ADPR..G..RMPEPGLLEAAVETV.TSMLE..QTM.DT.PS.....PWSY.ADA----......CQSLD.......KTTSSGYPH---......HKRKNDDWNGTTFV........................................GELGEQAAHANNM.YENA.KH.....MKPIYTAALKDELVKPEKI.......yQKVKKRLLWGADLGTVVRAARAFGPFCDAIKSH..VIKLPIKVGMNT-IED.GPLIYAEHAK...YKN..HFDADYTAWDSTQNRQIMTES....FSIMSR..LT...--A.SP.........E.LAEVV...........AQ......D....LLAP...SEM....DVG.DYVI...........................RVKEGLPSGFPCTSQVNSINHW...IIT.L.C.ALSE.ATGLSPDVV-................................---QSM.SYFS.fYGDDEIVSTDIDFDPA....---RLTQ.........................ILKE..YGLKPTR..PDKTEG.pIQV...RKNVDGLVFLR..RTI..SRDAAG.............FQGRLDRASIERQIFWT.RGP.NHSDpse....tlvpHTQRKIQLISLLG...EASLH...GEKFY.R...KISSKVIHEIKTGGLEMYV.........PGWQAM-FRWMR-f...........................................................................................................
#=GR POLG_NVN68/1300-1767        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
R1AB_BRV1/4879-5187                    ..............................................................davyralgpenitklfeyaqkaplpfctk-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....------------------Iitk.falsAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVaqNSQGFCLIGVSKYGLK.FSKFLKDKYGaieQFD..VFGSDYTKCDRTFPLSFRALT....AALLYE..LG..gWEE.DS.........W.LYLNE...........VN......S....YMLD...-TM....LCD.GMLL...........................NKPGGTSSGDATTAHSNTFYNY...MVH.Y.V.VAFK.TILSDLSDC-................................------.----..----------------....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------nkvmriaahnayttgdygvfntlleeqfqtnyflnflsddsfifskpgalkiftcenfsnklqtilhtkvdltkswattghieefcsahiiktdgeyhflpsrgrlla
POLG_HAVHM/1750-2215                   ...........................................................................................MNVVSKTLFRKSPIYHHIDKTMI.....NFPAAMPFSKAEIDPMA.......------VMLSKYSLPIV...EEPE..D..YKEASIFYQNKIVGK.TQLVD..DF-.--.-L.....DLDM.AITGAPG......IDAIN.......MDSSPGFPYVQE......KLTKRDLIWLDENGlll..................................gvhPRLAQRILFNTVM.MENC.SD.....LDVVFTTCPKDELRPLEKV........LESKTRAIDACPLDYSILCRMYWGPAISYFHLN.pGFHTGVAIGIDP-DRQ.WDELFKTMIR..fGDV..GLDLDFSAFDASLSPFMIREA....GRIMSE..LS...--G.TP.........S.HFGTA...........LI......N....TIIY...SKH....LLY.NCCY...........................HVCGSMPSGSPCTALLNSIINN...VNL.Y.Y.VFSK.IFGKSPVFF-................................--CQAL.KILC..YGDDVLIVFSRDVQIDnldlIGQKIVD.........................EFKK..LGMTATS..ADKNVP..--Q...LKPVSELTFLK..RSF..NLVEDR.............IRPAISEKTIWSLIAWQ.RSN.AEFE...........-----QNLENAQW...FAFMH...GYEFY.Q...KFYYFVQSCLEKEM-----.........IEYRLKSYDWWRM............................................................................................................
#=GR POLG_HAVHM/1750-2215        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
Q7T7T5_HARNA/1275-1680                 ............................................................................qckviyppltlnqiv-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.--CGIDGe...ghIDHME.......QNTSAGCPHF--......-GPKSQFMRFETDSngeqv..............................figltDVQQQSFDEMIAC.LERG.LP.....VPCLFVATKKDEALRIGKV........P----RTFYAASMNVIMAVRKYFCPVLQALKAN..PIHAEIAIGTNAFGKD.WADIYSHLASh.sTET..VIAGDYSSFDMSHNADAVRCAmqvlLDLIDE..SS..lYSD.VD.........K.LAART...........LV......E....SLGQ...SFL....AFD.GTWM...........................QVIGWVMSGVPLTAELSSTLNQ...IYM.R.V.VWKV.VT-QRPISD-................................-FRSHV.ALIV..YGDDNNAAVRDEPRYN....-FQSVAV.........................TMGK..FRMTYTN..TDKNDE..MHI...YQRLEDAEFLK..RLW..VPGPLK.............VYAPLSWDSINKRIVWT.RSR.APDR...........---VRSLVYSVAA...DCLEHqfeGLEYW.E...KFCHTL-------------.........-------------cqeeevdgqvpykhlvegdpi.......................................................................................
#=GR Q7T7T5_HARNA/1275-1680      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
NS1AB_TASV1/1260-1545                  ................................................................................deyktvwqvgp-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.-R.....EKPLWWCFLKTEVLKLAKI........EQDDIRMILCTDPVFTRIGAAFEQHQNSLMKLE..TENHHAQVGWSPFFGG.IHRRATRLYG..eHRY..YVELDWTRFDGTIPPELFRRI....KLMRFF..LL..dPKY.KT.........P.ENRDR...........YN......W....YVEN...LIDkvvlLPT.GEVC...........................KIYGGNPSGQFSTTVDNNFVNV..wLTVfE.L.AYLF.YKEHNRLPTI...............................cEIKKHT.DWIC..YGDDRLLAVDKRFINS...yDTAAVIA.........................MYKD.vFGMWVKP..DNIK--..--V...FPSLEGVSFC-..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------gmvwtkrkgqyvgkpnvdkilstls...................................................................................
#=GR NS1AB_TASV1/1260-1545       pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_PYFV1/2270-2778                   ..........................................................................................p-KSITKSTIVPSLIQPYMPRKPL.....TEPAILDPRDVRLGENRyd...pmIDGIKKYEEQARPIKIS...WRNQ..I..IESMAAQMQDWETFM.VRE--..GYM.TM.DL.....PMSV.VINGIDGv...eyYEPLN.......MSTSEGYPLILNrp.kdaHGKEYLFETMESGErr....................................ikSAKLEAHYESYGH.ALQStEP.....FPLICIECPKDERRALDKI.......yEKPKTRLFSILPVEFNMHARRLFLDFNVFVMAN..RHKHGIMVGINPHSRE.WSDLAISLAS..fSPY..GFNGDFANFDGMFHPSSFSMV....SELANI..FY...-GN.FL.........S.TERDN...........LT......R....MLTN...RFS....LMK.GAIL...........................RVPGGGPSGFPMTVIFNSFINL...FYL.Q.S.AWIM.LARFNGRQDIsh............................pcNFPKYV.RACV..YGDDNIVAIKMEVLPW...yNLQTVSE.........................ALFD.yFGVTMTDgaKNKASE..AKP...YGKILEFDFLK..RHF..KADELIp..........slFHAPLHKRSIEEQVYWI.REG.GNSL...........-ELLEANIENALY...EAHHH...GREYY.E...ELKDQIKKAMNRAGYMSFV........aPSYLMCRQRWLQQ............................................................................................................
#=GR POLG_PYFV1/2270-2778        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
Q66776_ERBV1/2133-2571                 ..........................................................................................v-HVPRKTKLRPTVAINTFECD--.....VEPAVLSKFDRRLEEP-.......-DSFELTLLHKNDRRYP...EDTS..M..DKHLEAAVEAYASSL.FAQI-..GTD.NG.II.....SEYE.AVTGIEN......LDSVE.......TTTSPGLPYTTA......GIPREALFDPDKTQ........................................--LIGPAAERLQE.FLRG.DF.....SKHVFQTFLKDELRSKAKV........RAGNTRVVEVAAVDHVVAGRMLLGKFTAKMHAN.nGLGIGSAVGCNP-DVD.FTRFAYQILE...WDY..VYDIDYKNFDASHSPKVFQYL....KKLL--..-S...PEN.GF.........D.VRLQK...........YI......D....SLCY...SKH....QFG.DTYY...........................ECEGALPSGCSATSILNCLMNN...IVL.R.A.AAYD.VFTNYEEGD-................................-----L.AFLT..YGDDVLLCANQPLPLE....---RFRK.........................SLAK..LGYTITP..ADKSSV..FPE...VSTLADVVFLK..RRF..KPDEEFp..........flFKPVMDVRNLQDHLRYA.KPG.TLRE...........------KLLSTTD...LAVHL...GPLEY.A...RLFRPFV------------.........-------------evgy........................................................................................................
#=GR Q66776_ERBV1/2133-2571      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
U5XL86_9PICO/1898-2350                 ..........................................................................................v-HVPRRSTLVPSPAFGAFPVL--.....KEPAPLTNKDPRLNPDV.......--DLD--VSVMAKH---...-NKG..D..LTKPWPNLEAAVALY.FSYLP..DH-.FR.TL.....SMHE.AINGTPG......LDGMD.......LTQAAGYPWNTR......GVSRRSLFIDTPGG........................................YKPTPELEKSVDD.CLDN.--.....PDYWYTSFLKDELRPTEKV........ALGATRVVEAAPVQAIIAGRMLLGGVLEHMQSN..PCQYGSAVGCDP-DRD.WTRIYWDFNE...FDE..VWDMDYKCFDATLPTVAFELI...aNELAKR..IG...---.--.........D.PRVIP...........YL......R....SVSN...SQH....VFG.RQAY...........................IMTGGNPSGCVGTSCWNSIINN...CVL.L.S.ALMS.HPDFDP----................................---DRY.RILA..YGDDVIYAHEPTIHPS....---FVAD.........................FYRK.hTSLVVTP..ASKAGS..FPE...HSSILTVTFLK..RHF..VPDETYp..........myVHPVIDPETYRNSVMWT.RGG.PFQC...........------QLDSLSY...LAHHS...GPNNY.Q...AWVDAVKAQCAANGVEVRLl.......pYAYLQAAW-----lqtv........................................................................................................
#=GR U5XL86_9PICO/1898-2350      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
D9YV26_OSCV1/1798-2252                 ..........................................................................................v-HIPRNSVLKPSPAAGAYPTV--.....LEPAVLRRSDGRLLDGV.......--VLDEAIFS-------...--KH..D..KGDMTEPWKNLPQAF.SVYFN..QFQ.NK.EI.....RTLT.LHEAINGt...plLDGID.......MNQSPGYPYITQ......GVSRRSLFTWNPDGh......................................wDPVPELVAEVERA.LENP.--.....QEFIYTTFLKDELRKVEKV........ENGLTRVIEAAPLPVILAGRMLLGGLFEEMQSQ..PGKYGSAVGCDP-DID.WTKFFWKFER...FEH..VYDMDYKAFDSTVPTAAFDLL....SYHLER..LI...---.-G.........D.PRISK...........YI......S....SIAS...SRH....VYG.NKIY...........................LMLGGMPSGCVGTSILNTICNN...CFV.L.S.ALLE.HKDFDINQY-................................------.YIIA..YGDDVVYATNPPISPT....----FIK.........................SFYDryTPLVVTP..ADKSDK..FNE...SSTIFDVTFLK..RSF..VPDPTKp..........wlIHPLIDPVVYEQSCMWV.RDG.DWQD...........------TLDSLCQ...LAFHS...GPKTY.A...RWVETVRAKAHSRGV----.........-------------lprfypfdylqkrwelk...........................................................................................
#=GR D9YV26_OSCV1/1798-2252      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_SVSAP/1226-1696                   .........................................................................................mp--TGTRYHRSPAWPEEQPGET--.....HAPAPFGAGD---KRYT.......---FSQTEMLVNGLKPY...T-EP..T..AGVPPQLLSRAVTHV.RSYIE..TII.GT.HR.....SPVL.TYHQA--......CELLE.......RTTSCG-PFV--......QGLKGDYWDEEQQQy......................................tGVLANHLEQAWDK.ANKG.IA.....PRNAYKLALKDELRPIEKN........KAGKRRLLWGCDAATTLIATAAFKAVATRLQVV..TPMTPVAVGINMDSVQ.MQVMNDSLKG...-GV..LYCLDYSKWDSTQNPAVTAAS....LAILER..FA...--E.PH.........P.IVSCA...........IE......A....LSSP...AEG....YVN.DIKF...........................VTRGGLPSGMPFTSVVNSINHM...IYV.A.A.AILQ.AYESHNVPYT...............................gNVFQVE.TVHT..YGDDCMYSVCPATASI....-FHAVLA.........................NLTS..YGLKPTA..ADKSDA..---...IKPTNTPVFLK..RTF..TQTPHG.............VRALLDITSITRQFYWL.KAN.RTSDpssp...pafdRQARSAQLENALA...YASQH...GPVVF.D...TVRQIAIKTAQGEGLVLVN.........TNYDQALATY---na..........................................................................................................
#=GR POLG_SVSAP/1226-1696        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
H6VBU5_CADIV/936-1394                  .........................................................................................fa---PTHTKLKRSPVYGVYPVT--.....KEPAPLKPTDRRIDEGV.......--DFNEAVFGKYGADMK...EPFR..N..LDVGRDVV---IARL.KKVLP..TKK.FA.PC.....TVSE.ALNGKDG......LPKLD.......LKQASGYPYNLS......AIKRKHLIESDKDG........................................FLTATPKLLADIE.ESKK.HP.....EKFPYTSFLKDELRSVKKV........KAGKTRVVEAGSLPVIVEGRMIFGNLFAYFNTH.pGFETMAAVGCDP-EVC.WTDWYYKMRE...KAH..TWDYDYTGFDGSIPSCSFDAL....ADLLCE..FV...--E.NE.........D.DVRRY...........IS......N....I-KN...SYH....AHD.GNLY...........................LIEGAMPSGCAGTSVFNCLINA...MLC.F.S.CFMD.-LEPEMDPF-................................----EP.LLIA..YGDDILVSSDHDLFPS....---RVSE.........................WMKK.nTTFKITP..ADKGEI..FND...DSDVSDVRFLK..RLF..VEDPICe...........lIHPVIETETLEPSLNWC.HEG.EFET...........------KVDAISM...LAFHH...GPEYY.R...DWCKKLTDICEERN-----.........-------------isppglkpysvhrnrwlr..........................................................................................
#=GR H6VBU5_CADIV/936-1394       pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_HPE2W/1722-2163                   .........................................................................................my--INTKSQIHKSPVYGAVEVK--.....MGPAVLSKSDTRLEEPV.......-DCLVKKSASKYRVNKF...Q---..V..NNELWQGVKACVKSK.FREI-..FGV.NG.IV.....DMKT.AILGTSH......VNSMD.......LSTSAGYSFVKS......GYKKKDLICLEPFSv......................................sPMLEKLVQEKFHN.LLKG.NQ.....ITTIFNTCLKDELRKLDKI........ATGKTRCIEACEIDYCIVYRMIMMEIYDKIYQT.pCYYSGLAVGINP-YRD.WHFMINALND...--Y..NYEMDYSQYDGSLSSMLLWEA....VQVLAY..CH...---.DS.........P.DLVMQ...........LH......K....PVID...SDH....VVF.NERW...........................LIHGGMPSGSPCTTVLNSLCNL...MMC.I.Y.TT--.NLISPGI-D-................................-----C.LPIV..YGDDVILSLDKEIEPE....---RLQS.........................IMAE.sFGAEVTG..-SRKDE..PPS...LKPRMEVEFLK..RKPgyFPESTF.............IVGKLDTENMIQHLMWM.KNF.STFK...........-----QQLQSYLM...ELCLH...GKDTY.QhyvKILNPYLK-----------.........-------------ewnipv......................................................................................................
#=GR POLG_HPE2W/1722-2163        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
Q9WJ28_PTV1F/1795-2234                 .......................................................................................fvyt---PTRTSLKPTFVC--VDPK--.....LEPAALSHLDPRLKEPE.......--NFKAVILSKHVGDSL...QLPW..G..IRW---ASYKYAERI.RAMLP..PDF.LE.PL.....SVRE.AVEGIDG......LDPMD.......MDKSPGLPYVKK......GLRRTDLWNPKTGS........................................---SLELMAEINR.YLDY.NY.....DKHVFLTFLKDELRPKEKV........QAGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKN.pGWNTGSAVGVNP-DLA.WTQIFYTAPS...-RN..VLAMDYSGFDASHTSGMFCIL....KHFLTT..LG...---.-Y.........G.TLQLS...........YI......D....SLCY...SKH....HWD.DETY...........................RLDGGLPSGCSGTTIFNTIMNN...IVA.R.A.AASY.AAD-------................................---GPV.GILC..YGDDILVSSPEKFPVS....---DWLE.........................FYSK..TPYKVTA..ADKSEQ..-ID...WRDITQCTFLK..RGF..VLDGSL.............VRPVMEEQHLAELLKWA.RPG.TLQA...........------KLLSIAQ...LAFHL...PRSAY.N...RLMLPFEEAGYEI------.........-------------psherlneewrem...............................................................................................
#=GR Q9WJ28_PTV1F/1795-2234      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
RDRP_HPBVH/194-421                     .......................................................................................kptd-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........--VKQRVVWMFPFAVNIRELQVYQPLILTFQRL..GL-VPAWVSMEAVDRR.ITKMFDTKGP...RDV..VVCTDFSKFDQHFNPTCQSVA....KELLAD..LL..tGQE.AV.........D.WLERV...........FP......I....KYAI...PLA....YNW.GEIR...........................YGIHGMGSGSGGTNADETLVHR...VLQ.HeA.AISH.HTTLNPNSQ-................................------.---C..LGDDGVLTYP-GISAE....---DVMQ.........................SYSR..HGLDMNL..------..EKQ...YVSKQDCTYLR..RWH..HTDYR-.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------vdgmcvgvystmr...............................................................................................
#=GR RDRP_HPBVH/194-421          pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_FCVUR/1263-1737                   .........................................................................................ip--KGTRLHVSPAHTEDFEECS--.....HQPASLGSGDPRCPKSL.......------TAIVVDSLKPY...C-DK..V..EGPPHDILHRVQKML.IDHLS..GFV.PV.NI.....SSET.SMLSA--......FHKLN.......HDTSCG-PYL--......GGRKKDHMTNGEPD........................................KPLLDLLSAKWKL.ATQG.IA.....LPHEYTIGLKDELRPVEKV........AEGKRRMIWGCDVGVATVCAAAFKGVSDAITAN..HQYGPVQVGINMDSPS.VEALHQRIKS...AAK..VYAVDYSKWDSTQSPRVSAAS....IDILRY..FS...--D.RS.........P.IVDSA...........AN......T....LKSP...PIA....IFN.GVAV...........................KVSSGLPSGMPLTSVINSLNHC...LYV.G.C.AILQ.SLEARGVPVT...............................wNLFSTF.DMMT..YGDDGVYMFPMMFASV....-SDQIFA.........................NLSA..YGLKPTR..VDKSVG.sIEP...IDP-ESVVFLK..RTI..TRTPQG.............IRGLLDRSSIIRQFYYI.KGE.NSDDwktp..pksidPTSRGQQLWNACL...YASQH...GVEFY.N...KIYKLAQKAVEYEELHLEP.........PTYHSALEHYNN-q...........................................................................................................
#=GR POLG_FCVUR/1263-1737        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
C5MSH2_SALVA/1914-2363                 ...........................................................................hvsrrsrlhpippafg-------------------AFPI....tKEPAALSRKDPRLPEGT.......----DLDAITLAKHD--...--KG..D..IATPWPCMEEAADWY.FSQLP..DN-.LP.VL.....SQED.AIRGLDH......MDAID.......LSQSPGYPWTTQ......GRSRRSLFDEDGNP........................................--LPELQEAIDSV.WDGG.S-.....--YIYQSFLKDELRPTAKA........RAGKTRIVEAAPIQAIVVGRRLLGSLINHLQGN..PLQHGSAVGCNP-DIH.WTQIFHSLTS...FSN..VWSIDYSCFDATIPSVLLSAI....A---SR..IA..aRSD.QP.........G.R-VLD...........YL......S....YTTT...SYH....VYD.SLWY...........................TMIGGNPSGCVGTSILNTIANN...IAV.I.S.AMMY.CNKFDPRDP-................................-----P.VLYC..YGDDLIWGSNQDFHPR....ELQAFYQ.........................KFTN..F--VVTP..ADKASD..FPD...SSSIFDITFLK..RYF..VPDDIHp..........hlIHPVMDEQTLTNSIMWL.RGG.EFEE...........------VLRSLET...LAFHS...GPKNY.S...AWCEKIKAKIRENGCDA--.........-------------tftpysvlqrgwvs..............................................................................................
#=GR C5MSH2_SALVA/1914-2363      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
RDRP_CPVKS/22-375                      .....................................................................apkkifrskyiptglvprlkyw-----------------------.....-----------------.......RDVPSRAEMSKRIGKYF...EDEF..K..FYPNEEKLNEAVNIV.QEKWI..SHY.GT.SL.....NVTS.VSE-S--......FRTLP.......KSTSAGLPF---......----KSGCTKYEAR........................................NKMMRFARSQWDR.VSKE.--.....LQLQVLPCRLGARCQLRKR........GENKPRLIWAYPGYL-SIIENQYLTAIKKVPPP..NFIGWSTNWLDG-GKS.LNRLLFGDKW..tWQS..IAQIDFSSFDATVRTELIFHA....FKILRS..LF..dLTR.TE.........N.IMLDQ...........LR......H....YFIN...TPI....LFY.DKII...........................VKNRGIPSGSAFTQIIGTIVNM...IAC.Q.Y.ASLR.SRDYNLR---................................-----I.PFSC.wLGDDSFLNFETALCRQ...eFEYDYLE.........................KFKE..LGLNVSI..-DKTH-..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------yttrfiddfevrf...............................................................................................
#=GR RDRP_CPVKS/22-375           pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
Q9DLK1_FMDVP/1865-2317                 ...........................................................................................VHVMRKTKLAPTVAHGVFNPE--.....FGPAALSNKDPRLNEGV.......--VLDDVIFSKHKGDTR...MSEE..D..KALFRRCAADYASRL.HSVL-..GTA.NA.PL.....SVYE.AIKGVDG......LDAME.......PDTAPGLPWALQ......GKRRGALIDFENGT........................................--VGPEVEAALKL.MESR.EY.....-KFVCQTFLKDEIRPLEKV........RAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSN.nGPQIGSAVGCNP-DVD.WQRFGTHFAQ...YKN..VWDVDYSAFDANHCSDAMNIMf..eEVFRTE..FG...---.-F.........H.PNAEW...........IL......K....TLVN...TEH....AYE.NKRI...........................VVEGGMPSGCSATSIINTILNN...IYV.L.Y.ALRR.HYEGVELDT-................................-----Y.TMIS..YGDDIVVASDYDLDFE....---ALKP.........................HFKS..LGQTITP..ADKSDK.gFVL...GHSITDVTFLK..RHF..HMDYGTg...........fYKPVMASKTLEAILSFA.RRG.TIQE...........------KLISVAG...LAVHS...GPDEY.R...RLFEPFQGLFEIPSYRSL-.........-------------ylrwvna.....................................................................................................
#=GR Q9DLK1_FMDVP/1865-2317      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
Q8JJT0_PSV13/1874-2321                 ..........................................................................................i-NVRTKTAFHPSVFHDVFPGS--.....KEPAAMSTNDPRLEVDL.......----HEAIFAKYKGNVD...A--T..L..PEEALIAIDHLVSKF.KAIVP..DDL.TE.KM.....SLED.VVYGTDN......LDGLD.......LTTSAGYPYNTM......GIRKKDLIPPKGQS........................................---LSPLLKALDL.YGYD.LP.....----FTTYLKDELRPKEKV........KMGKTRVIECSSLNDTIMMKQTFGRLFQVCHKN.pGTYTGGWVGCNP-DVD.WS----KLREi.gDAY..VCAFDYTNWDASLSPLWFDAL....KLFLSK..LG...---.-Y.........S.GRDLV...........LI......A....QLCY...SNH....IYK.NEGY...........................KVAGGMPSGCSGTSVFNSIINN...IVI.R.T.LIML.VYKNINLDE-................................-----L.LVLC..YGDDLLVAYPYELDPN....---VLVP.........................LAKS..YGLTITP..ADKSTT..FQT...GTKLTDVTFLK..RGF..KFDEEYp..........flCHPVFPMEEVHESIRWT.KNA.SYTQ...........-----EHVTSLCL...LAWHN...GEEVY.E...EFCTKIRSVPVGRAL--IL.........PPYSQLRRSWLDM............................................................................................................
#=GR Q8JJT0_PSV13/1874-2321      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
Q33DY4_AURN1/1024-1531                 .........................................................................aeeltgvspfkdgkplyg-----------------------.....-APPFSPGFNPNTGEYQg....pyNHFVKKCGVVKKSLHPE...ILRQ..T..IDTVREHILSGLKA-.---KG..VTK.IA.PV.....TLEV.AQNGHPEd...fyMRAMK.......PSTSGGWAW---......PGSKKKYSEQCSLDfksd...............................aymplYDVKEQVVEQLLA.YERG.ED.....ALPLLGAQLKDEPRAYKKI........VDRKTRVFCMSPYESTLVNRMYLMPFYTLMVEH..GDIFRTAIGINMHSQD.VGDLVTRMTD..fSDQ..FMEGDYGGYDTSMPYDIGLAAntvvYQVCQD..LG..yDSH.AL.........Q.MVRGI...........LS......D....NLYP...-TV....VMR.GDVF...........................AAPALQPSGKYATAEDNSLRGL...ILM.V.Y.AWIS.ECTDIGDQCTgrart.....................tqfqpeDFFTQV.LPVI..YGDDMLAGVKPVAQQF...yNNNTYQT.........................FCKE.vYGLEFTN..AQKTAE..MAN...FLEWDDTSFLK..RSF..VFREDLq...........vWVAQLELASIMKSICYYlPSK.SVNE...........DDQLIDSCVSAMR...ELFFHl.pKEEFE.-...-------------------.........-------------vrrtrfaevcadlfnkdatdvlkvfpsfdcirqs..........................................................................
#=GR Q33DY4_AURN1/1024-1531      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
RDRP_NODAM/531-717                     ....................................................................................griissf-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........----------ADMRFLLRFSSYTLAFRDQVLHA.eHNRHWFCPGLTP-EQI.ATKVVDYVSG...VEE..PSEGDFSNFDGTVSEWLQRHV...mNAVYLR..YF...NHR.AQ.........R.DLRSY...........TD......M....LVSC...PAR....AKRfGFAY...........................DAGVGVKSGSPTTCDLNTVCNG...FLQ.Y.C.SIRM.-THPELTPI-................................---DAF.RLIGlaFGDDSL----------....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------ferrfaknyakvsae.............................................................................................
#=GR RDRP_NODAM/531-717          pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
Q0ZQM1_DHAV/1810-2228                  .........................................................................................yh--QPRKTAYMKSPVYE--DSP--.....YEPAVLSINDQRLGVKI.......-EDMAKKASDKYIGNVF...QPP-..P..EAF-QLAKTHVAEKL.SRVLG..CHD.TI.SY.....ESAV.SSDVI--......--PMN.......WDTSPGIKYK--......GETKR---------........................................-QLVLKSSFRQDV.LKQL.QS.....PSTVFTCYLKDELRKKEKI........KEGKTRGIEACNFDHTVAYRMVMGDIFSNIYDD.sFIMSGCAVGINP-FCE.WDNLLANLQP...YN-..-LCLDFSGFDGSLSAQILEEA....VDVLSY..FH...--N.DP.........A.LVKRI...........HA......P....TIY-...STH....YVT.DEIW...........................QVEGGMCSGSPCTTVVNSIVNQ...LAC.Y.T.-ILA.VLGYDINQ--................................-----C.YVVS..YGDDCVLSVPEVRDIS....---KLSH.........................YFKL.fFGMTATA..SDKESD..ITW...LAP-MEIEFLK..RTP..AFLPGTr...........kIIGVLDKEVLEGKIQWC.KGP.EAFK...........-----QQLDSFLL...EAALH...GEEYY.H...EVTSKLK------------.........-------------arcp........................................................................................................
#=GR Q0ZQM1_DHAV/1810-2228       pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
RPOA_PRRSL/2721-3033                   ........................................................................................ctl-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....---------------KKQY.......cSKPKTRTILGTNNFIALAHRSALSGVTQAFMKK..AWKSPIALGKNKFKE-.---LHC--TV...AGR..CLEADLASCDRSTPAIVRWFV....ANLLYE..LA...---.GC.........E.EYLPS...........YV......L....NCCH...DLV....ATQ.DGAF...........................TKRGGLSSGDPVTSVSNTVYSL...VIY.A.QhMVLS.ALKMGHEIGLkflee......................qlkfeDLLEIQ.PMLV..YSDDLVLYAERPTFPN....-YHWWVE.........................HLDL.mLGFRTDP..-KKTVI..---...---TDKPSFLG..CRI..EAGRQL.............V---PNRDRILAALAYH.MKA.QNAS...........--EYYASAAAILMdscACIDH...DPEWY.E...DLICGIARCARQDGYSFPG.........PAFFM--------smweklr.....................................................................................................
#=GR RPOA_PRRSL/2721-3033        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
F4YYF3_HUNVO/1808-2238                 .....................................................................................iytphr------TQLYPTVACNDET---T.....VEPAALSPNDKRLQRPE.......--EFKRTILAKHVGD--...--RT..D..GPTAMLRGSRHKVRL.VRAKC..GPV.NE.RL.....SLHE.AVFGTDN......LDPMD.......QTRSPGWPYI-G......SKRRPELLWQTDNG........................................LELDPVLRAELML.MMEG.DF.....SNHIFVTFLKDELRDKEKV........KQGKTRVIDIASYGHAIMGRVLFGRLAAAMHAH.nGVELGSAVGTNP-DID.WTRYAAEFK-...FKN..FVDVDYSGFDATHSSFSFHCL....KVFLKE..LG...---.-F.........D.EIALK...........YV......D....SLCD...STH....IWD.DEIF...........................QITGGLPSGCSCTSIFNTIINN...IVV.R.S.LVPE.VYD-------................................---GEF.QMLA..YGDDLVLCSQDTFSVE....---KYKE.........................ILEE.vTNYRITP..ASKTGT..-FE...WTGLSGVVFLK..RYF..YQDGLL.............VRPVMTYKNLHNILSWA.RAG.TVQE...........------KLNSVAR...LAQHR...GEQDY.N...KLMEPFV------------.........-------------dcgyvvps....................................................................................................
#=GR F4YYF3_HUNVO/1808-2238      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_RHDVF/1279-1750                   .........................................................................................pv--SGTRYAKVPGVPDEYKTGY--.....-RPANLGRSDPDSDKSL.......------MNIAVKNLQVY...QQEP..K..LDKVDEFIERAAADV.LGYLR..FLT.KG.ER.....QANL.NFKAA--......FNTLD.......LSTSCG-PFV--......PGKKIDHVKDGVMD........................................QVLAKHLYKCWSV.ANSG.KA.....LHHIYACGLKDELRPLDKV........KEGKKRLLWGCDVGVAVCAAAVFHNICYKLKMV..ARFGPIAVGVDMTSRD.VDVIINNLTS..kASD..FLCLDYSKWDSTMSPCVVRLA....IDILAD..CC...--E.QT.........E.LTKSV...........VL......T....LKSH...PMT....ILD.AMIV...........................QTKRGLPSGMPFTSVINSICHW...LLW.S.A.AVYK.SCAEIGLHCS................................NLYEDA.PFYT..YGDDGVYAMTPMMVSL....-LPAIIE.........................NLRD..YGLSPTA..ADKTE-..FID...VCPLNKISFLK..RTF..ELTDIG.............WVSKLDKSSILRQLEWS.KTT.SRHMviee..tydlaKEERGVQLEELQV...AAAAH...GQEFF.N...FVCRELERQQAYTQFSV--.........YSYDAARKILAD-r...........................................................................................................
#=GR POLG_RHDVF/1279-1750        SS    .........................................................................................-----SEEEEE-TT--GGG--SE--.....-EES--GGGSSSTT--H.......------HHHHHHHHHHC...CS--..S..-SS--HHHHHHHHHH.HHHHH..HHT.TT.-E.....E---.-HHHH--......HHHS-.......TTSB---TTS--......-SBGGGTBSSSSB-........................................HHHHHHHHHHHHH.HCTT.--.....---EEEEEE---EEEHHHH........HTT---EEEEE-HHHHHHHHHHHHHHHHHHHHT..TTTSSB-TT--TTSTH.HHHHHHHHHT..T-SE..EEEEEETTHHHH--HHHHHHH....HHHHHT..TB...---.-S.........H.HHHHH...........HH......H....HCS-...-EE....EES.SEEE...........................E-SS---TTSTTHHHHHHHHHH...HHH.H.H.HHHH.HHHHCT----................................-HHHHS.-EEE..ETTEEEEEE-HHHHHT....-HHHHHH.........................HHHT..TT--EEE..TTTTS-..SS-...-B-GGG-EETT..EEE..EEETTC.............EEEEE-HHHHHHHHHEE.EEE.EEESSS-B..------HHHHHHHHHHHH...HHHTT...-HHHH.H...HHHHHHHHHTTTS------.........--HHHHHHHHHH-H...........................................................................................................
#=GR POLG_RHDVF/1279-1750        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
O70710_IFVS/2465-2952                  ........................................................................................htf-----QSKIVPSVLQSEAYDP-E.....KEPCIQSRTDPRYTHGA.......DPLTDGVATIGQPTKPL...N-DE..I..LMLAYESVRDELLGV.LPP--..PYV.QP.PV.....SIRE.AIT-AERa...piSSSMN.......LATSAGYPLAGRg...srEKKKSDYILGGQLK........................................ASVHNKINKAYVQ.RTNG.IR.....PPCVYWAHLKDELRPSEKL.......rRFGGTRVFSVPPLELVLNSRRFLLPFMDAFQSF..PIEAHHAIGLNPNSGD.WRRLRDTLLE..kGPC..LLQMDYKNYSDAIPKECVAKA....FHIIVD..YYr.kWHC.ST.........V.EIENA...........LK......T....LFLD...TADa.elLVY.GDVF...........................KVNNGVLAGHPMTSVVNSVVNL...ILM.N.Y.MWIK.ITRRRASEF-................................--FKLT.YIIV..MGDDVVISLPKQLTEE...fDCRKICA.........................EFAK..YDIKVTD..SEKNLTgePKP...YDSFDKFEFLS..RGF..SDCDAYp..........diTFAPVKTIALFDCPLWI.SKG.QDEE...........-EQTIQAIQAGLL...LAFDH...GPEFF.G...KYKQLLLEGTSVPTYNYF-.........-------------twselyslfhgd................................................................................................
#=GR O70710_IFVS/2465-2952       pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
A0A023T7J3_ROSV2/1995-2452             ..........................................................................................v-HVPTKSKLRPSPAHGAFPVK--.....KQPAVLRQSDERLCAVD.......---LDEVLFSKYTEDMV...KPFV..G..LDIGLEVVRNRLRTL.I----..PSK.LP.QI.....SISQ.AINGIDN......MDGLD.......MNQSPGLPYVSE......GVSRRALFDCVDGQ........................................-WVPRERLASDIA.QVSA.DP.....SLGHFATFLKDELRSVDKV........KVGKTRVVEAGSLPHIIVGRKIFGNLFALFNAN.pGFQTMCAVGCDP-DTT.WTELYHPLSA...KTY..VFDYDYSGFDGSVPSCCFDAL....ADLLVD..FV...---.EG.........E.EDVRK...........YI......A....SLKT...SFH....HYR.GKLW...........................RLDGAMPSGCCGTSVFNSLVNA...MLL.F.S.AFSQ.ICPDFKASE-................................-----P.LLVA..YGDDVLVGTDQSLLPS....---LVAE.........................WVNS.hTTFKITP..ADKGSV..FND...ESDIHSVQFLK..RHF..TPDPDFp..........alIHPTIDPDTYEQSVMWQ.RTG.DFQE...........------TVNSLAL...LVFHR...GPKTY.G...RWCSSVSRACVDGGY----.........-------------pppffppfsllraqwlk...........................................................................................
#=GR A0A023T7J3_ROSV2/1995-2452  pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLN_CRPVC/1252-1761                   ......................................................................................vgqav-----KTTLLKSCIYGMLSKP-I.....TKPAHLTRTR--LPNGEiv..dplMKGLKKCGVDTAVLD--...-AEI..V..ESAALDVKQVVLTQY.NSMLD..VNKyRR.FL.....TYEE.ATQGT-Gdd..dfMKGIA.......RQTSPGYRYFQMpr..klP------GKQDWMGsgeqyd............................ftsqraQELRRDVEELIDN.CAKG.II.....KDVVFVDTLKDERRPIEKV........DAGKTRVFSAGPQHFVVAFRKYFLPFAAYLMNN..RIDNEIAVGTNVYSTD.WERIAKRLKK..hGNK..VIAGDFGNFDGSLVAQFFGQSc..gKSFYPW..FKt.fNDV.NT.........E.DGKRN...........LMiciglwT....HIVH...SVH....SYG.DNVY...........................MWTHSQPSGNPFTVIINCLYNS...MIM.R.I.VWIL.LARKLAPEMQs.............................mkKFRENV.SMIS..YGDDNCLNISDRVVEW...fNQITISE.........................QMKE..IKHEYTD..EGKTGD..MVK...FPSLSEIHFLK..KRF..VFSHQLq...........rTVAPLQKDVIYEMLNWT.RNT.IDPN...........-EILMMNINTAFR...EIVYH...GKSEY.Q...KLRSGIEDLAMKG------.........-------------ilpqqpqiltfkaylwda..........................................................................................
#=GR POLN_CRPVC/1252-1761        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
I3VR62_MISV1/1826-2277                 ..........................................................................................i-HVPRKTKLRKSPAFPIFQPS--.....AGPAVLSKNDVRLNPEV.......--DFDKQVFSKHSAN--...-QKV..Y..PEAFRRMARWYANEV.FTHI-..GKD.NG.PL.....SLKD.AIKGIDF......LDAMD.......PTTSPGLPYSAA......GIQRTDLVDFDTGE........................................-IISAALAVEYNN.YVEG.NY.....EEHTFQTFLKDEIRSEEKI........KAGKTRIVDVPSLAHVIMGRVLLGRFCSKFQAS.pGTTLGSAIGCNP-DTD.WTKFAHELME...RHW..CYDIDYSNFDSTHGTGMFELL....I---EC..FF..tKEN.GF.........S.PAVAP...........YL......R....SLAT...SKH....AWM.DKRY...........................LIEGGLPSGCSATSVLNTVMNN...III.R.A.LLSL.TYSNFHPED-................................-----V.AVLA..YGDDLLVASDFVLDFN....---RVRA.........................TANE.hTLYKLTT..ANKAPD..FPE...TSTLLECQFLK..RKF..VLHSVRn..........fiWRPVMDTTNLQTMLSFY.KPN.TLSE...........------KLLSVAQ...LAFHS...GYHTY.E...QLFEPFRELQM--------.........-------------kvpswfvlehewe...............................................................................................
#=GR I3VR62_MISV1/1826-2277      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLN_ABPVR/1406-1898                   ........................................................................................epg-----KTDIRPSLVYGKISEI-K.....TKPAILRNVI--VDGKI.......------VNIKHKNLKKC...AMDTpyV..SKEMTEEAFQLVKSVwLKGMR..NEL.KK.VL.....TYEE.AICGNDSs...efISAIN.......RSSSPGFPWIRDr....iKGTKGKQGWFGAEGey...................................ildEDVFEAVKTRIQN.AKNG.VR.....TPVMWVDTLKDERRPIEKV........DQLKTRVFSNGPMDFSITFRMYYLGFIAHLMEN..RITNEVSIGTNVYSQD.WNKTVRKLKT..mGPK..VIAGDFSTFDGSLNVCIMEKF....ADLANE..FY..dDGS.EN.........A.LIRHV...........LL......M....DVYN...STH....ICG.DSVY...........................MMTHSQPSGNPATTPLNCFINS...MGL.R.M.VF-E.LCSKKYSALNgtkc........................yvmkDFSKHV.SIVS..YGDDNVINFSDEVSEW...fNMETITE.........................AFEK..LGFTYTDelKGKNGE..VPK...WRTIEDVQYLK..RKF..RYDSKRk...........vWEAPLCMDTILEMPNWC.RGS.LDIQ...........-EGTKVNCENAIM...ELSMH...EEYVF.D...KWSKVISKAYQKAT-----.........-------------gdcldistyngyaq..............................................................................................
#=GR POLN_ABPVR/1406-1898        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
Q155Z9_SVV1/1731-2179                  ..........................................................................................v-HVPRKSKLRKTTAHAVYKPE--.....FEPAVLSKFDPRLNKDV.......--DLDEVIWSKHTANVP...YQ--..-..PPLFYTYMSEYAHRV.FSFL-..GKD.ND.IL.....TVKE.AILGIPG......LDPMD.......PHTAPGLPYAIN......GLRRTDLVDFVNGT........................................--VDAALAVQIQK.FLDG.DY.....SDHVFQTFLKDEIRPSEKV........RAGKTRIVDVPSLAHCIVGRMLLGRFAAKFQSH.pGFLLGSAIGSDP-DVF.WTVIGAQLEG...RKN..TYDVDYSAFDSSHGTGSFEAL....I---SH..FF..tVDN.GF.........S.PALGP...........YL......R....SLAV...SVH....AYG.ERRI...........................KITGGLPSGCAATSLLNTVLNN...VII.R.T.ALAL.TYKEFEYDM-................................-----V.DIIA..YGDDLLVGTDYDLDFN....---EVAR.........................RAAK..LGYKMTP..ANKGSV..FPP...TSSLSDAVFLK..RKF..VQNNDG............lYKPVMDLKNLEAMLSYF.KPG.TLLE...........------KLQSVSM...LAQHS...GKEEY.D...RLMHPFADYGAVPS-----.........HEYLQARWR----al..........................................................................................................
#=GR Q155Z9_SVV1/1731-2179       pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
R1AB_IBVB/4438-4717                    ...............................................sagypfnkfgkarlyyemsleeqdqlfeitkknvlptitqmnlk-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....------------------Ya.....isAKNRARTVAGVSILSTMTNRQFHQKILKSIV-N..TRNASVVIGTTKFYGG.WDNMLRNLIQ..gVEDpiLMGWDYPKCDRAMPNLLRIAAslvlARKHTN..CC..sWSE.RI.........Y.RLYNE...........CA......Q....VLSE...TVL....ATG.G-IY...........................VKPGGTSSGDATTAYANSVFNI...IQA.T.S.ANVA.RLLSVITRDIvydnikslqyelyqqvyrrvnfdpafvekfysYLCKNF.SLMI..LSDDGVVCYNNTLA--....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------kqglvadisg..................................................................................................
#=GR R1AB_IBVB/4438-4717         pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
A0A0N0DYT7_9TRYP/166-307               .......................................................................................gksn-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........---------------------------------..--------------RE.RDEVLRHTFG...DSK..VLYTDFSHFESHHRGVYAQLF....VDFLYY..MG...--G.DC.........L.EFQAA...........RH......L....ILGS...NKS....TFS.SIEA...........................SCKSRLMSGALWTSFQNSFLNF...FVM.A.Y.LNYK.KTAVKRQFR-................................--IESL.KMFI..EGDDGIM---------....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------khfnynnriikrl...............................................................................................
#=GR A0A0N0DYT7_9TRYP/166-307    pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_RTSVA/2907-3417                   .........................................................................................pt--SVTKTTICKSMIHGLIGEI-K.....TEPSVLSAWDRRLPFPP.......----GEWDPMKDAVKKY...G-SY..I..LPFPTEEIQEVENFL.IKKFR..RKE.NS.RRtrnvnSLEV.GINGIDGs...dfWSPIE.......MKTSPGYPYILKrp.sgaQGKKYLFEELEPYPsgrpk..............................yamkdPELIENYERIKEE.VTSG.VK.....PSIMTMECLKDERRKLAKI.......yEKPATRTFTILSPEVNILFRQYFGDFAAMVMST..RREHFSQVGINPESME.WSDLINSLLR..vNTK..GFAGDYSKFDGIGSPAIYHSI....VNVVNA..WY..nDGE.VN.........A.RARHS...........LI......S....SIVH...RDG....ICG.DLIL...........................RYSQGMPSGFAMTVIFNSFVNY...YFM.A.L.AWMS.TVGSSLLSPQgs............................ckDFDTYC.KIVA..YGDDNVVSVHEEFLDV...yNLQTVAA.........................YLSH..FGVTYTD..GDKNPIhmSKP...YEDITKMSFLK..RGF..ERVESSg..........flWKAPLDKTSIEERLNWI.RDC.PTPV...........-EALEQNIESALH...EAAIH...GRDYF.D...DLVRRLNSALTRVMLPPTD.........ISFEECQARWW--as..........................................................................................................
#=GR POLG_RTSVA/2907-3417        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POL1_BAYMY/1633-2105                   .........................................................................................ig--QMNKGLIDKHVIVGENDDVYDf..mrEHPTFTWLKD-FMNEYA.......PSVLSYSAYYKDLCKYN...RAKH..V..LTYNPEELHYATKGL.IKMLE..DAG.LT.QG.....SVRT.PQQ-V--......ISDIQ.......WNTSAGPSY---......QGKKRDLCAHLSDD........................................EVLHLAEVCRQQF.LEGK.S-.....-TGVWNGSLKAELRTIEKV........EPEKTRVFTASPITSLFAMKFYVDDFNKKFYAT..NLKAPHTVGINKFGRG.WERLHDKLNR..pGWL..HGSGDGSRFDSSIDPFFFDVV....KTIRKH..FL...PSE.HH.........K.AIDLI...........YD......E....ILNT...TIC....LAN.GMVI...........................KKNVGTQR-QPSTVVDNTLVLM...TAF.L.Y.AYIH.KTGDRELAL-................................-LNERF.IFVC..NGDDNKFAISPQFDEE....FGHDFSP.........................ELVE..LGLTYEF..DDITSD..---...---ICENPYMS..LTM..VKTPFG.............VGFSLPVERIIAIMQWS.KKG.GVLH...........------SYLAGIS...AIYESf.nTPKLF.K...SIYAYLLWLTEEHEAEILAamtqsstalP------------ipsmldvyrlhy................................................................................................
#=GR POL1_BAYMY/1633-2105        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
NS1AB_HASV1/1068-1326                  ..................................................................kmnyfdteenyleahgwapyireft-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-----------RV.YKGD.KP.....-EVLWYLFLKKEIIKEEKI........RNSDIRQIVCADP-IYTRIGACLEAHQNALMKQ.hTDTSVGQCGWSPMEGG.FKKTMQRLVNk.gNKH..FIEFDWTRYDGTIPPALFKHI....KEIRWN..FInkdQRE.KY.........R.HVHEW...........YV......N....NLLN..rHVL....LPS.GEVT...........................LQTRGNPSGQFSTTMDNNMVN-...-FW.L.Q.AFEF.AYFNGPDRD-................................-LWKTY.DTVV..YGDDRLSTTPSVPDDY....-EERVIT.........................MYRD.iFG-----..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------mwvkpgk.....................................................................................................
#=GR NS1AB_HASV1/1068-1326       pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
A0A084WAC7_ANOSI/151-300               vpiieayrkfptpiafgfangagvkkklfntlhgshyvslkfenfqrtlptwlilvafdviafnidfvhyrgggipntksmikmyefltey-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........---------------------------------..----------------.----------...---..---------------------....------..--...---.--.........-.-----...........--......-....SIHT...PVR....LSN.GERY...........................QKHSGLASGSYFTELIESICNH...ILV.K.Y.AAIK.ENVEI-----................................------.----..----------------....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------nkifvlgav...................................................................................................
POLG_SPMMV/2668-3129                   .......................................................................................fanv------TRISKHVIKGKRPSFVEy..cnTYPDNIFMRDNLCEHYG.......PSILSKAAFYKDFTKYD...DPVK..V..GRLDCYAFDTALAMV.HDTLS..QLG.FH.GN.....SGSQwDIAEI--......FDDLN.......KKSSMGALY---......SGKKGQWMHGLTPE........................................-DAISLAVESYAL.LNSG.H-.....-LGVWSGSLKAELRHVDKL........KEGKTRVFTGAPIDTLLAGKILVDNFNNYFYKC..HLQGPWTVGINKFNRG.WNKLANYFNH...DWV..FIDCDGSRFDSSIPPIMFNAV....CMLRSV..FGd.lDPD.EN.........Q.TLSNL...........YT......E....IVNT...PIL....TIE.GNII...........................RKFRGNNSGQPSTVVDNTLILM...IAM.E.Y.AIAK.VFVTRPDI--................................------.KYVC..NGDDLLINCPRSTANA....ISEHFKD.........................VFAD..LSLNYDF..-DHVC-..---...-DKITDVDFMS..HSFmwLDTEQM.............YIPKLDKERIVAILEWE.RSD.EQFR...........----TRSALNAAY...IESFG...YEDLM.T...EIEKFAHFWAKKHGLNDV-.........-------------lmerekvrslyvde..............................................................................................
#=GR POLG_SPMMV/2668-3129        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
Q6YDQ7_9VIRU/112-400                   ................................................sfaslnrvqrksminaiskakkafklpyqrepldwhevgrhfr-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......RDTSAGVSFM--......GQKKGDVMEEIYHE........................................ARWLGHRMKQNGR.AKFD.-P.....SKMRFPPCLAGQRGGMSEA........SDPKTRLVWIYPAEMLAIEGFYAPEMYHA-YMD..DPLSPMLNGKSS-QRL.YTEWTCGLRD...GEM..LYGLDFSGFDTKVPAWLIRVA....FDILRQ..NI..rWDS.FRgekvskrdaQ.KWRNV...........WD......GmvwyFINT...PIL....MPD.GRMF...........................RKYRGVPSGSWFTQMIDSVVNY...ILV.D.Y.L---.----------................................------.----..----------------....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------aacqqceiralrvlgddsafrscdpf..................................................................................
I6YQK4_PASI1/1692-2128                 ..........................................................................................v-HQPSKSVLKPSPLYGFVEQE--.....LHPAVLSPFDNRLKCEV.......DSVIGRQA-LKYNSNVF...NP--..-..GPYYDEVLEAFAVDF.NGR--..FGI.NE.MM.....SAEE.VFA-LSG......DEAIE.......LSTSPGLKYTSK......GLRKRDLVPGGKAC........................................DLLLSDV---ERL.MNDP.KG.....TPVYFYCHLKDELRPQEKI........EQGLTRCIESSDFDYVFSAKRVFCKLFRQLYDS.dPIETGFAVGINC-IAD.WKNLLDGM--...YDY..IYDFDLKGYDGSIPRQLMIDA....CRVLSE..SC...---.SD.........E.ELAYN...........LL......H....KTVD...SQH....VVG.NQLL...........................TVSGGMASGSPFTTIVNTACNI...LAN.M.T.VL--.----EEEGV-................................----EY.TLVC..YGDDILVSTSDPISVN....---DYVD.........................KMGQ.yFGFTVKL..-DGDYP..---...-KTKNNFTFLK..RRT..TYWNGI.............PVGAMEVGLLLQHLGYC.RSV.SVFQ...........-----DQLNSASI...ELALH...GPETY.N...VLRSRVNSFLNGTGFALM-.........-------------syrraaavv...................................................................................................
#=GR I6YQK4_PASI1/1692-2128      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
I7C489_GALIV/2009-2471                 .........................................................................................pa-HVPRKTKLTHSPAWGAFEPT--.....KEPAALLNHDRRLPDGV.......--TVDEVAFSKQNRG--...----..D..VVEPWPGLTEAADLY.FSQCN..FPR.LK.ML.....TMDE.AINGTEG......LDGID.......MNQSPGYPWN-Q......RTSRRELFILNEDG........................................-RYEPVEELKLAV.LKLL.QD.....PDYWYSTFLKDELRKTEKA........RAGKTRLVEAAPIDAIIAGRMIFGQLFALFHSN..PGMFGSAVGCDP-DFH.WTPFAHSFKP...FRN..VWSLDYSCFDSTLPSVCFNHI...gSRLQDI..IE..vTEE.CH.........P.DIVPK...........YI......N....SIRA...SKH....VFG.ARAY...........................VMIGGMPSGAVGTSIFNSMINN...ICV.L.S.ALIS.RPDFVPTPN-................................----NY.RILA..YGDDVLYACTPDFHPR....---DLKA.........................FYDK.wTPLQVTP..ATKEGD..FPN...SSSLSDVTFLK..RWF..VPDETIp..........yyYHPVIEPDTYEQSVMWS.RGG.EFQD...........------TVTSLCF...LAHHA...GPRNY.T...NWIAAVRDACKRNGYDPPIf......leYSYLQMRWM----ql..........................................................................................................
#=GR I7C489_GALIV/2009-2471      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_HRV8A/1721-2163                   ..........................................................................................v-HVSSKTRLQPSVFHDVFPGT--.....KEPAVLSSNDPRLETDF.......----DSALFSKYKGNPA...C--Q..V..TPHMKIAVAHYAAQL.STL--..DIN.PQ.PL.....SLEE.SVFGIEG......LEALD.......LNTSAGFPYVSL......GIKKKDLIDKKTKD........................................---ITKLRKAIDE.Y---.-G.....IDLPMVTFLKDELRKKEKI........KDGKTRVIEANSVNDTVLFRSVFGNLFSAFHKN.pGIVTGSAVGCDP-EVF.WST-IPLMLD...GEC..LMAFDYSNYDGSLHPVWFKCL....SMLLED..IG...---.--.........-.-FSSQ...........LI......N....QICN...SKH....IYK.SKYY...........................EVEGGMPSGCAGTSIFNTIINN...III.R.T.LVLD.AYKNIDLDK-................................-----L.KILA..YGDDVIFSYNFKLDMA....---VLAK.........................EGEK..YGLTITP..ADKSDV..FQE...LTY-KNVTFLK..RGF..RADERHs..........flIHPTFPVAEIHDSIRWT.KNP.SCMQ...........-----EHVLSLCH...LMWHN...GRHAY.Q...EFIKGIRSVSAGRALYI--.........PAYEVLEHEW---yek.........................................................................................................
#=GR POLG_HRV8A/1721-2163        AS    ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
POLG_EMCVR/1844-2290                   ...........................................................................................IHVPRKTALRPTVARQVFQPA--.....YAPAVLSKFDPRTEADV.......----DEVAFSKHTSN--...-QES..L..PPVFRMVAKEYANRV.FTLL-..GKD.NG.RL.....TVKQ.ALEGLEG......MDPMD.......RNTSPGLPYTAL......GMRRTDVVDWESAT........................................--LIPFAAERLRK.MNEG.DF.....SEVVYQTFLKDELRPIEKV........QAAKTRIVDVPPFEHCILGRQLLGKFASKFQTQ.pGLELGSAIGCDP-DVH.WTAFGVAMQG...FER..VYDVDYSNFDSTHSVAMFRLL....A---EE..FF..tPEN.GF.........D.PLTRE...........YL......E....SLAI...STH....AFE.EKRF...........................LITGGLPSGCAATSMLNTIMNN...III.R.A.GLYL.TYKNFEFDD-................................-----V.KVLS..YGDDLLVATNYQLDFD....---KVRA.........................SLAK..TGYKITP..ANTTST..FPL...NSTLEDVVFLK..RKF..KKEGPL.............YRPVMNREALEAMLSYY.RPG.TLSE...........------KLTSITM...LAVHS...GKQEY.D...RLFAPFREVGVVV------.........PSFESVEYRWR--sl..........................................................................................................
#=GR POLG_EMCVR/1844-2290        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
Q9WPZ7_GAVAU/4727-4980                 ........................................................................hcginklingikagfnpkg-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........---------------------------------..----------------.----------...KSK..WISQDYPKFDTCVDTM--AQY....SYIVNH..AYh.yTHT.NL.........S.LIVRG...........LC......Q....LIANstsPII....YYN.SILI...........................RKLHGVSSGDGATAIKNSHCNS...VIT.N.I.AFYR.QIVDNQVPEEyrglqstlyttli.....ngihskddaysthrAFEWNIsRCAT..LSDDTLAIINPDVLDL....--DQYLS.........................SYRT.lGGYEITN..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------ekkifvrdepyeftfryffkedgfwynapliervfssivqcskatslcpeimagrllsil................................................
#=GR Q9WPZ7_GAVAU/4727-4980      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
E9L812_MEGR1/2353-2811                 .........................................................................................pn-HIPRRSALKKSPAYGAFPVK--.....SEPAILSQKDKRCEVDL.......----DEVMFSKHVPDHE...GWPT..L..EPA----MAYVVEEL.MQKCG..FSK.DD.PV.....PMWT.LEQAINGd...gvMEGID.......MGQSAGYPFSAQ.....gRSRRSFFEWNGEKW........................................--QATEELKKLVD.HALQ.HP.....DDYYYATFLKDELRPSEKV........KAGKTRLVDSDSLPRILAMRMVFGPLFEAMLRK.nGSEIHSAVGCNP-DVD.WTRFYYEMGPd.sFPY..CFDLDYSCFDSSEPKIAFLLM....AKYLEP..YF...---.--.........Q.HDVTP...........FL......S....AVAT...SKH....VYG.DKAY...........................EMEGGMPSGCVGTSMFNCINNS...AFI.V.S.ALIA.-LKISPDS--................................-----C.KWIC..YGDDVIISTDEKALSR....---RIAD.........................FYSR.nTNLKVTP..ACKSGD..FPE...ESTFYEVSFLK..RFF..VHDSHYp..........qlIHPYMPLEHLEQSSMWQ.TDG.EYQQ...........------KLDSLAQ...LAFHA...GGPDY.R...KFCDTIQRRCRSRGTEVYFr.......pFEY----------ymamwyah....................................................................................................
#=GR E9L812_MEGR1/2353-2811      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
R1AB_CVMA5/4977-5237                   ........................................................................iyaytkrnvlptltqmnlk-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....------------------Ya.....isAKNRARTVAGVSILSTMTGRMFHQKCLKSIAAT..R-GVPVVIGTTKFYGG.WDDMLRRLIKdvdSPV..LMGWDYPKCDRAMPNILRIVSslvlARKHDS..CC..sHTD.RF.........Y.RLANE...........CA......Q....VLS-...EIV....MCG.GCYY...........................VKPGGTSSGDATTAFANSVFNIcqaVSA.N.V.CSLM.ACNGHKIEDLsirelqkrlysnvy...radhvdpafvseyyeFLNKHF.SMMI..LSDDGVVCYNSEFASK....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------gyianisafqqvly..............................................................................................
#=GR R1AB_CVMA5/4977-5237        pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
B6VDX7_THCOV/4095-4376                 ............................................nldksagypfnklgkarnyydmtyveqnqlfeytkrnvlptltqmnl-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....---------KYAIS-----........AKDRARTVAGVSIISTMTNRQYHQKMLKSISLA..RNQ-TIVIGTTKFYGG.WDNMLRRLMDginNPI..LVGWDYPKCDRSMPNMLRIAA...sCLLARKhtCC..tQSQ.RF.........Y.RLANE...........CC......Q....VL-S...EVV....VSG.NNLY...........................VKPGGTSSGDATTAYANSVFNI...LQV.V.S.ANVA.TFLSTSTSNHnsreiaslhrnlyediyrgdsnntsviedfyqHLRKYF.GLMI..LSDDG-----------....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------vacidseaaasgvvsnld..........................................................................................
#=GR B6VDX7_THCOV/4095-4376      pAS   ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*...............................................................................................................................................................................................................................................................................................................................................
A0A0B2UTK5_TOXCA/161-386               ...................................................................................tqlalrad-----------------------.....-----------------.......-----------------...----..-..---------------.-----..---.--.--.....----.-------......-----.......------------......--------------........................................-------------.----.--.....-------------------........--PKVRHVWGAPFHTILIEGTIAQPIIQNLQLK..NQ--PIFIGRDMFKEL.PATIHRMMRD...DNY..AYCVDLSSFDSSVNVWFIECF....FDFVKS..TVr.fPNI.FS........sS.AVSYC...........RE......E....LINT...PVV....MPD.GKLY...........................ICRTGVPSGSYFTQMIDSYVNL...ILL.R.A.AQLY.HCERVLPTY-................................------.----..----------------....-------.........................----..-------..------..---...-----------..---..------.............-----------------.---.----...........-------------...-----...-----.-...-------------------.........-------------vlgddslfvyrdpnlldelenffakfnfvmnrkksivskdpgeiiflghnfygsrltrdd................................................
#=GC SS_cons                           ........................................................................................S-C-THCCCCCCCCTTTCCCSECETTE..ETCEECHHCCCCTCCCCHHHHHS...B-TTCHHHHTCHHCHCC...CCCC..C..ECCCHHHHHHHHHHH.HHHHH..HCT.TT.SC.....ECCH.HHHHHCCHHHHHHHCCS-...EEEETTSB--TTTCGT.HHHHHCCCGGGTCCCCCCHHHHHTT.HHHHHHHH..SS.EEEEEEEESTS.EEEETTTTCCCCHHHHHHHHH.HCCT.TT.....SSSEEEEEE-BSEEEHHHH.....TT.HTTEEEEEEEE-HHHHHHHHHHHHHHHHHHHHT.TCTTCTBSTTHHHCHHH.HTCHHHHCHT..T-SE..EEEEEESSHHHHS-HHHHHHHH..HHHHHHT..TC..HHHH.HC.........H.HHHCH...........HH......H....HCCE...CEE....EET.TEEES.T.....................TS.EECSSS-TTSTTHHHHHHHHHH...HHH.H.H.HHHH.HCCCCCGGG-SSHHHHH..................HHHHHHHTCHCCC.EEEE..ETTEEEEEESSCCHHHHHHHHHHHHHHTSS.S.S...........SS.EEE.HHHT.ETTEEEEE..CCTTSS.GCCS...EECCCCHECTT..CEE..EECSTCT..........TTEEEECGHHHHHHHHHEE.CCC.CCHCTSTC..-HHHHHHHHHHHHHHHHH...HHHCCH.HHHHHH.HHHHHHHHHHCCSTTTSTSTTS-HHHHHHHHSGGHHHHHHHHHHSC...........................................................................................................
#=GC seq_cons                          ..........................................................................................h........h..t................htPshhs..c.hh...................h.h..hp.....................ht.hht.h.ht.h........t..h.....sh...s.tsh........hpshs.......hssSsGhsa.........thp+pphh..t..t..........................................h...h.tt.t..httt..........hha.shLKDElRshcKl........ttsKTRhlpssshthhlhhRhhhtshhpthhss..shphshsVGhss.shp.Wsphhpphtp...hph..hhshDaSsFDuohsshhhphh....tplhpp..hh.....t.t..........p..htph...........hh......p....hlss...sht....hhs.spha...........................phpGGhPSGsssTslhNolhN....lhh.p.h.shhp.thtt...........................................h.thls..YGDDslluhs.pht.........phhp.........................hhtp..huhphTs..ssKst............hpphsFLK..Rth..h.p.th.............hhs.hp.ppl.p.l.ah.+ss.t..p.................pl.shhh....hhht...u.p.a.p...phht.h...................................hh..........................................................................................................
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