GenomeNet

Database: Pfam
Entry: Reo_sigmaC
LinkDB: Reo_sigmaC
Original site: Reo_sigmaC 
#=GF ID   Reo_sigmaC
#=GF AC   PF04582.11
#=GF DE   Reovirus sigma C capsid protein
#=GF AU   Mifsud W
#=GF SE   Pfam-B_2922 (release 7.5)
#=GF GA   41.00 41.00;
#=GF TC   41.00 41.10;
#=GF NC   40.90 40.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   11752709
#=GF RT   Subunit composition and conformational stability of the
#=GF RT   oligomeric form of the avian reovirus cell-attachment protein
#=GF RT   sigmaC. 
#=GF RA   Grande A, Costas C, Benavente J; 
#=GF RL   J Gen Virol 2002;83:131-139.
#=GF DR   INTERPRO; IPR007662;
#=GF SQ   7
#=GS W4K670_9HOMO/12-143      AC W4K670.1
#=GS M9M851_PAEPP/2-143       AC M9M851.1
#=GS A0A0F2PYR3_9CLOT/2-155   AC A0A0F2PYR3.1
#=GS R9ISM7_9FIRM/3-178       AC R9ISM7.1
#=GS R5BNS1_9FIRM/787-919     AC R5BNS1.1
#=GS T1HZ69_RHOPR/2-135       AC T1HZ69.1
#=GS A0A101X035_9CREN/83-175  AC A0A101X035.1
W4K670_9HOMO/12-143                 .....qmfsnmntqftr--------------------------------------QLATVQEKLTGQVEELRQDVAGIKVQVADLRQDVAGIKVQVADLQQDVAGLQQDVGGIKVQVADLQQDVAGIKVQVADLQQDVA.......GIKVQVADLQQDVAGIKVQVADLQQDVGGIK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------vhvad..............................
M9M851_PAEPP/2-143                  .............enel------------------------------------LHQILSELKSIKTDVSELKNDVSELKAGQQQLQADVTKLQDNMTELQADVKVLQTDVKVLQTDVKVLQTDVKALQTDVKVLQTDVK.......ALQTDVKVLQTDVKALQTDVKVLQTDVKDIKN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------eqrymwddvkqldnrinnqa...............
A0A0F2PYR3_9CLOT/2-155              ...........deklii----------------------------------ELLTDVKGTVNSLTGTVNGLTENVNSLTGKVNGLTENVNSLTGTVNSLTGTVNSLTGTVNSLTGTVNSLTETVNDLKGTVGGLTEKVDmlvigqqKIEADVAQLKDDMTNVKIDIKELKNDVANIKGEN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------kvirffmekidegindheh................
R9ISM7_9FIRM/3-178                  ...............en----------------------------------EKLDLILSEMKEMKKDINDVKNDTNEMKNDISNMKNDISNMKNDISNMKNDINNMKNDIDNMKNDINNMKNDIDNMKNDISNMKNDID.......NMKNDISNMKNDIDNMKNDINDLKQKVTKIDLTIENELR-TNIMRVAEGHLD--------------------------------------------------------------------------------------------------------------------------------------------------------lsrnlheamkpnneiemlgikvrmleadvkelkqk
R5BNS1_9FIRM/787-919                tlvdtlkdrlgvndaqq----------------------------GLKDVNSRIDATNTLATEAHDRITDTNTRVNDIDTKVQTIDGKVTTIEGNVSTLRTDVNNISANVSTLNTNVDTLTTNVNTLTTDLGNLTNDVN.......TLSENVGAIASDVSAIN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------nrvgk..............................
T1HZ69_RHOPR/2-135                  .........kgaditkl--------------------------RTDITELRADITKLTADITKLRADITELRADITKLRADITELRADITNLRADITKLRADITELRADITELRADITKLRADITELRADITNLRADIT.......ELRADITNLRADITKLRADITELRAD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------itkl...............................
A0A101X035_9CREN/83-175             ...........kvvksh---------------------------------EERLARLETAVEELTRAVKAHEERLARLESAVEELTKIVKAHEERLAKLEERMTNVEDRLSRIEAAIEELTKIVKAHEDRLAKVE----.......------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------dr.................................
#=GC seq_cons                       ..............hph..................................t.lspltothpclpssls-lcpclsclcsplppLptcVsslcsslspLpsDlsslpsclsslpsslssLppsVsslcsclusLppDls.......tlpsslsslpsDlsslp.plt.Lptc...................................................................................................................................................................................phh...............................
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