GenomeNet

Database: Pfam
Entry: Rhabdo_M1
LinkDB: Rhabdo_M1
Original site: Rhabdo_M1 
#=GF ID   Rhabdo_M1
#=GF AC   PF03342.9
#=GF DE   Rhabdovirus M1 matrix protein (M1 polymerase-associated protein)
#=GF AU   Mifsud W
#=GF SE   Pfam-B_3629 (release 6.5)
#=GF GA   25.00 25.00;
#=GF TC   107.00 106.80;
#=GF NC   22.20 20.20;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   8291243
#=GF RT   The polymerase-associated protein (M1) and the matrix protein
#=GF RT   (M2) from a virulent and an avirulent strain of viral
#=GF RT   hemorrhagic septicemia virus (VHSV), a fish rhabdovirus. 
#=GF RA   Benmansour A, Paubert G, Bernard J, De Kinkelin P; 
#=GF RL   Virology 1994;198:602-612.
#=GF DR   INTERPRO; IPR005010;
#=GF SQ   31
#=GS PHOSP_SHRV/31-219    AC Q9QJT8.1
#=GS I7HBD9_9RHAB/19-219  AC I7HBD9.1
#=GS Q9QBH8_9RHAB/20-219  AC Q9QBH8.1
#=GS Q82124_9RHAB/21-219  AC Q82124.1
#=GS Q91CW9_9RHAB/20-219  AC Q91CW9.1
#=GS Q68M48_9RHAB/1-227   AC Q68M48.1
#=GS Q4JFC2_9RHAB/21-219  AC Q4JFC2.1
#=GS S4VDR9_9RHAB/21-219  AC S4VDR9.1
#=GS I7HBE3_9RHAB/18-219  AC I7HBE3.1
#=GS E9M491_9RHAB/1-227   AC E9M491.1
#=GS Q5TLN6_9RHAB/21-219  AC Q5TLN6.1
#=GS I2B181_9RHAB/20-219  AC I2B181.1
#=GS Q91CW7_9RHAB/18-216  AC Q91CW7.1
#=GS C9WE66_9RHAB/1-227   AC C9WE66.1
#=GS Q82125_9RHAB/20-219  AC Q82125.1
#=GS Q4ACA3_9RHAB/1-227   AC Q4ACA3.1
#=GS N0BRA4_9RHAB/1-227   AC N0BRA4.1
#=GS D3J0T2_9RHAB/19-219  AC D3J0T2.1
#=GS PHOSP_IHNVO/1-227    AC Q08454.1
#=GS I7HBE1_9RHAB/21-219  AC I7HBE1.1
#=GS Q9QJV8_9RHAB/21-219  AC Q9QJV8.1
#=GS C0IQV8_9RHAB/20-219  AC C0IQV8.1
#=GS Q9WA88_VHSV0/21-219  AC Q9WA88.1
#=GS PHOSP_IHNVW/1-227    AC Q82681.1
#=GS D3J0Y6_9RHAB/1-227   AC D3J0Y6.1
#=GS C1PHY2_9RHAB/20-219  AC C1PHY2.2
#=GS M9QL86_9RHAB/20-219  AC M9QL86.1
#=GS Q9PWV3_9RHAB/18-219  AC Q9PWV3.1
#=GS G3G7M4_9RHAB/21-219  AC G3G7M4.1
#=GS Q08475_9RHAB/21-219  AC Q08475.1
#=GS PHOSP_HIRRV/1-227    AC Q82037.1
PHOSP_SHRV/31-219               ..................ddatilgilgkk---------------------------------------------------TPTVK...MEKGKGKGDpIEAFLLEFVDERRQVEANKRLRQYIRQLKMSHQEELTAHLERASAENRANLKSMMESQAESNKTTKTILATLITLRDHVIEEGSKKPRGLDKDQIKLERALGFERGYSSAIAIVNQLKVTEPSQVCKPSVRAAALSAMEKGEFESSGEVFKAVVKRAK----aelt
I7HBD9_9RHAB/19-219             .....dldrkldnapkdtrsalfssspgss---------------------------------------------------KQKPS...PKKKSTPTT.LEEIIGHFVPEDLQLDATKALGQLLRRIRLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---eld.
Q9QBH8_9RHAB/20-219             ...ldkkldnapkdnrsalfsstsgstrqk------------------------------------------------------SS...PKKKPNPTT.LEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---eld.
Q82124_9RHAB/21-219             dkrldnapkdnrsalfsstsgstrqksssk--------------------------------------------------------...--KKPNPTT.LEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNRGKRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---dvd.
Q91CW9_9RHAB/20-219             ......ldrrldnapkdtrsalfssspgss---------------------------------------------------KQKPS...PKKKSTPTT.LEEIIGHFVPEDLQLDATKALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---dld.
Q68M48_9RHAB/1-227              ..............................MSDGEGEQFFDLEGKDILRLESRLKTPRNDGQIGKNPRQRKEDQVPREEPKKTTRR...PDKNKGLSQ.LEQLILKYVEEESCQDALKEFGGLIANIRQAHQVELTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENNSPRPKPLDPDQVKAARALGFGIGYRTALNVFDRVKGVTPDTAGSQEVKNMATRAAEEDEYEGSPTFFGRVIDTVKKRM-x...
Q4JFC2_9RHAB/21-219             ....dkrldnapkdnrsalfsstsgstrqk------------------------------------------------------SS...PKKKPNPTT.LEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---eld.
S4VDR9_9RHAB/21-219             ....dkrldnapkdnrsalfsstsgstrqk------------------------------------------------------SS...PKKKPNPTT.LEEIIGHFVPEDLQLDATKALGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTISKAIKA---eld.
I7HBE3_9RHAB/18-219             ..adldkkldnapkdkksvlfsstsgstrq-----------------------------------------------------KSS...PKKKPNPTT.LEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTIAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVAKAIKA---eld.
E9M491_9RHAB/1-227              ..............................MSDGEGEQFFDLEGEDILRLESRLKTPRNDGQIGKNPRQRKEDQVPREEPKKVTRR...PDKNKGISQ.LEQLILKYVEEESCQDALKDFGGLIANIRQAHQAELTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENHSPLPKSLDPDQVKAARALGFGIGYRTALNVFDRIKGVTPDNAGSQEVKNMATRAAEEDEYEGSPTFFRRVIDTVKKRMK....
Q5TLN6_9RHAB/21-219             ......drrldnapkgtraalfssspgssk----------------------------------------------------QKPS...PKKKSTPTT.LEEIIGHFVPEDLQLDAKRALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKRPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---eld.
I2B181_9RHAB/20-219             ......ldrrldnapkdtrsalfssspgss---------------------------------------------------KQKPS...PKKKSTPTT.LEEIIGHFVPEDLQLDATKALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSMVSKAIKA---eld.
Q91CW7_9RHAB/18-216             .........adldkkldnapkdnrsalfss-------------------------------------------------PSESTRQkssPKKKPNPTT.LEEIIGHFVPEDLQLDATKALGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYFTVSKAIK----a...
C9WE66_9RHAB/1-227              ..............................MSDNEGEQFFDIPKNALDRVEARTMCPREDGKVVRKQAPQKEEPRLEAEQKRSPKK...QEKPRNMSP.LEQLVLKYVEEDSTQDALREFGGLIVQIRQSHQADMTRHLEAVATEHRANLQALTKSQQEHEKVSKEILSAVISIRSNLNENSSPRPKPLDLDQVNAERALGFGVGYRTALNVFGKLRGITPEEAGSQEVKNMAIREAEEDEYEGSGSFFKKVLDMVKKTMR....
Q82125_9RHAB/20-219             ......ldrrldnapkdtrsalfssspgss---------------------------------------------------KQKPS...PKKKSAPTT.LEEIIGHFVPEDLQLDATKALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGGRETYSTVAKATKA---eld.
Q4ACA3_9RHAB/1-227              ..............................MSDGEGEQFFDLVGEDILRLESRLKTPRNDGQIGKNPRQWKEDQVPREEPKKTTRR...PDKNKGLSQ.LEQLILKYVEEESCQDALKDFGGLIANIRQAHQAELTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENHSPLPKPLDPDQVKAARALGFGIGYRTALNVFDRIKGVTPDTAGSQEVKNMATRAAEEDEYEGSPTFFRRVIDAVKKRMK....
N0BRA4_9RHAB/1-227              ..............................MSDGEGEQFFDLEGKDILRLESRLKTPRNDGQIDKDPRQQKGGRVPREEPKKPTRR...PDKNKGLSQ.LEQLILKYVEEESCQDALKDFGGLIANIRQAHQAEMTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENHNPRPKPLDPDQVKAARALGFGIGYRTALNVFDRIKGVTPDTAGSQEVKNMAIRAAEDDEYEGSPTFFRRVIDTVKKRMK....
D3J0T2_9RHAB/19-219             .....dldrkldnapkdtrsalfssspgss---------------------------------------------------KQKPS...PKKKSTPTT.LEEIIGHFVPEDLQLDATKALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---eld.
PHOSP_IHNVO/1-227               ..............................MSDGEGEQFFNLEGEDILRLESRLKNPRNDGQIGKNPRQRKEDQAPQEEPKKTTRR...PDKNKGLSQ.LEQLILKYVEEESCQDALKDFGGLIANIRQAHQAELTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENHSPRPKPLDPDQVKAARALGFGIGYRTALNVFDRIKGVTPDNAGSQEVKNMAIRAAEEDEYEGSPTFFRKVIDAVKKRMK....
I7HBE1_9RHAB/21-219             .....drkldnapkdtrsalfsstsgfpkq-----------------------------------------------------KSS...PKKKPNPTT.LEELIGHFVSEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGDRETYSTVSKAIKA---eld.
Q9QJV8_9RHAB/21-219             ....dkrldnapkdnrsalfsstsgstrqk------------------------------------------------------SS...PKKKTNPTT.LEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---eld.
C0IQV8_9RHAB/20-219             ......ldrkldnapkdtrsalfsstsgft---------------------------------------------------KQKSS...PKKKPNPTT.LEELIGHFVSEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---eld.
Q9WA88_VHSV0/21-219             dkrldnapkdnrsalfsstsgstrqksssk--------------------------------------------------------...--KKPNPTT.LEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNRGKRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---dld.
PHOSP_IHNVW/1-227               ..............................MSDGEGEQFFNLEGEDILRLESRLKTPRNDGQIGKNPRRRKEDQAPQEEPKKTTRR...PDKNKGLSQ.LEQLILKYVEEESCQDALKDFGGLIANIRQAHQAEMTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENHSPLPKPLDPDQVKAARALGFGIGYRTALNVFDRIKGVTPDNAGSQEVKNLAIRAAEEDEYEGSPTFFRKVIDAVKKRMK....
D3J0Y6_9RHAB/1-227              ..............................MSDEEGEQFFNLEGEDILRLESRLKTPRNDGQIGRNPRRRKEDQAPQEEPKKTTKR...PDKNKGLSQ.LEQLILKYVEEESCQDALKDFGGLIANIRQAHQAELTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENLSPLPKPLDPDQVKAARALGFGIGYRTALNVFDRIKGVTPDNAGSQEVKNMAIRAAEEDEYEGSPTFFRKVIDAVKKRMK....
C1PHY2_9RHAB/20-219             ......ldrrldnapkdtrsalfssspgss---------------------------------------------------KQKPS...PKKKSTPTT.LEEIIGHFVPEDLQLDATKALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---eld.
M9QL86_9RHAB/20-219             ......ldrrldnapkdtrsalfssspgss---------------------------------------------------KQKPS...PKKKSTPTT.LEEIIGHFVPEDLQLDATKALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---eld.
Q9PWV3_9RHAB/18-219             .........adldkkldnapkdnrsalfss-------------------------------------------------PSESTRQkssPKKKPNPTT.LEEIIGHFVPEDLQLDATKALGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---eld.
G3G7M4_9RHAB/21-219             .......drrldnapkdtrsalfssssgss---------------------------------------------------KQKPS...PKKKSTPTT.LEEIIGHFVPEDLQLDATKALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSMVSKAIKA---eld.
Q08475_9RHAB/21-219             ....dkrldnapkdnrsalfsstsgstrqk------------------------------------------------------SS...PKKKPNPTT.LEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA---eld.
PHOSP_HIRRV/1-227               ..............................MSDNEGEQFFDIPKNALDRVEARTMCPREDGKVVRKQAPLKEEPRLEAEQKRSPKK...QEKPRGMLP.LEQLVLKYVVVVCSLDALREFGGLIAQIRQSHQADMTRHLEAVATEHRANLQALTKSQQEHEKVSKEILSAVISIRSNLNENSSPRHKPLDLDQVNAERALGFGVGYRTALNVFGKLRGITPEEAGSQEVKNMAIREAEEDEYEGSRSFFKKVLDMVKKTMR....
#=GC seq_cons                   .........t..tt.hssh.t..pus.tpp...................................................cpppp...PKKKssPTT.LEEIIGHFVPEDLQLDATKAhGQLLRRIKhSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIuMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLsLCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKA...-LD.
//
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