GenomeNet

Database: Pfam
Entry: Rhabdo_M1
LinkDB: Rhabdo_M1
Original site: Rhabdo_M1 
#=GF ID   Rhabdo_M1
#=GF AC   PF03342.8
#=GF DE   Rhabdovirus M1 matrix protein (M1 polymerase-associated protein)
#=GF AU   Mifsud W
#=GF SE   Pfam-B_3629 (release 6.5)
#=GF GA   25.00 25.00;
#=GF TC   319.20 319.00;
#=GF NC   21.20 20.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   8291243
#=GF RT   The polymerase-associated protein (M1) and the matrix protein
#=GF RT   (M2) from a virulent and an avirulent strain of viral
#=GF RT   hemorrhagic septicemia virus (VHSV), a fish rhabdovirus. 
#=GF RA   Benmansour A, Paubert G, Bernard J, De Kinkelin P; 
#=GF RL   Virology 1994;198:602-612.
#=GF DR   INTERPRO; IPR005010;
#=GF SQ   24
#=GS Q08475_9RHAB/1-219  AC Q08475.1
#=GS C1PHY2_9RHAB/1-219  AC C1PHY2.2
#=GS Q68M48_9RHAB/1-227  AC Q68M48.1
#=GS Q9WA88_VHSV0/1-219  AC Q9WA88.1
#=GS Q91CW7_9RHAB/1-216  AC Q91CW7.1
#=GS C0IQV8_9RHAB/1-219  AC C0IQV8.1
#=GS E9M491_9RHAB/1-227  AC E9M491.1
#=GS G3G7M4_9RHAB/1-219  AC G3G7M4.1
#=GS Q5TLN6_9RHAB/1-219  AC Q5TLN6.1
#=GS D3J0T2_9RHAB/1-219  AC D3J0T2.1
#=GS C9WE66_9RHAB/1-227  AC C9WE66.1
#=GS Q4ACA3_9RHAB/1-227  AC Q4ACA3.1
#=GS PHOSP_IHNVO/1-227   AC Q08454.1
#=GS Q82124_9RHAB/1-219  AC Q82124.1
#=GS PHOSP_IHNVW/1-227   AC Q82681.1
#=GS D3J0Y6_9RHAB/1-227  AC D3J0Y6.1
#=GS Q9QJV8_9RHAB/1-219  AC Q9QJV8.1
#=GS Q4JFC2_9RHAB/1-219  AC Q4JFC2.1
#=GS Q9QBH8_9RHAB/1-219  AC Q9QBH8.1
#=GS PHOSP_SHRV/1-219    AC Q9QJT8.1
#=GS Q9PWV3_9RHAB/1-219  AC Q9PWV3.1
#=GS Q91CW9_9RHAB/1-219  AC Q91CW9.1
#=GS PHOSP_HIRRV/1-227   AC Q82037.1
#=GS Q82125_9RHAB/1-219  AC Q82125.1
Q08475_9RHAB/1-219             MAD.IEMSESLVLSHG.SLADLDKRLDN.APKDNRSALFSS..TSGSTRQKS...SPKKKPNPT...TLEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKAELD.
C1PHY2_9RHAB/1-219             MTD.IEMSESLVLSHG.SLADLDRRLDN.APKDTRSALFSS..SPGSSKQKP...SPKKKSTPT...TLEEIIGHFVPEDLQLDATKALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKAELD.
Q68M48_9RHAB/1-227             MSD.-GEGEQFFDLEGkDILRLESRLKT.PRNDGQIGKNPRqrKEDQVPREEpkkTTRRPDKNKglsQLEQLILKYVEEESCQDALKEFGGLIANIRQAHQVELTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENNSPRPKPLDPDQVKAARALGFGIGYRTALNVFDRVKGVTPDTAGSQEVKNMATRAAEEDEYEGSPTFFGRVIDTVKKRM-x
Q9WA88_VHSV0/1-219             MAD.IEMSESLVLSHG.SLADLDKRLDN.APKDNRSALFSS..TSGSTRQKS...SSKKKPNPT...TLEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNRGKRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKADLD.
Q91CW7_9RHAB/1-216             MAD.IEMSESLVLSHG.SLADLDKKLDN.APKDNRSALFSS..PSESTRQKS...SPKKKPNPT...TLEEIIGHFVPEDLQLDATKALGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYFTVSKAIKA---.
C0IQV8_9RHAB/1-219             MAD.IEMSESLVLSHG.SLADLDRKLDN.APKDTRSALFSS..TSGFTKQKS...SPKKKPNPT...TLEELIGHFVSEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKAELD.
E9M491_9RHAB/1-227             MSD.-GEGEQFFDLEGeDILRLESRLKT.PRNDGQIGKNPRqrKEDQVPREEpkkVTRRPDKNKgisQLEQLILKYVEEESCQDALKDFGGLIANIRQAHQAELTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENHSPLPKSLDPDQVKAARALGFGIGYRTALNVFDRIKGVTPDNAGSQEVKNMATRAAEEDEYEGSPTFFRRVIDTVKKRMK.
G3G7M4_9RHAB/1-219             MTD.IEMSESLVLSHG.SLADLDRRLDN.APKDTRSALFSS..SSGSSKQKP...SPKKKSTPT...TLEEIIGHFVPEDLQLDATKALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSMVSKAIKAELD.
Q5TLN6_9RHAB/1-219             MSH.IEMKEFMVLSHG.SLADLDRRLDN.APKGTRAALFSS..SPGSSKQKP...SPKKKSTPT...TLEEIIGHFVPEDLQLDAKRALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKRPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKAELD.
D3J0T2_9RHAB/1-219             MTD.IEMSESLVLSHG.SLADLDRKLDN.APKDTRSALFSS..SPGSSKQKP...SPKKKSTPT...TLEEIIGHFVPEDLQLDATKALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKAELD.
C9WE66_9RHAB/1-227             MSD.-NEGEQFFDIPKnALDRVEARTMC.PREDGKVVRKQApqKEEPRLEAEqkrSPKKQEKPRnmsPLEQLVLKYVEEDSTQDALREFGGLIVQIRQSHQADMTRHLEAVATEHRANLQALTKSQQEHEKVSKEILSAVISIRSNLNENSSPRPKPLDLDQVNAERALGFGVGYRTALNVFGKLRGITPEEAGSQEVKNMAIREAEEDEYEGSGSFFKKVLDMVKKTMR.
Q4ACA3_9RHAB/1-227             MSD.-GEGEQFFDLVGeDILRLESRLKT.PRNDGQIGKNPRqwKEDQVPREEpkkTTRRPDKNKglsQLEQLILKYVEEESCQDALKDFGGLIANIRQAHQAELTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENHSPLPKPLDPDQVKAARALGFGIGYRTALNVFDRIKGVTPDTAGSQEVKNMATRAAEEDEYEGSPTFFRRVIDAVKKRMK.
PHOSP_IHNVO/1-227              MSD.-GEGEQFFNLEGeDILRLESRLKN.PRNDGQIGKNPRqrKEDQAPQEEpkkTTRRPDKNKglsQLEQLILKYVEEESCQDALKDFGGLIANIRQAHQAELTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENHSPRPKPLDPDQVKAARALGFGIGYRTALNVFDRIKGVTPDNAGSQEVKNMAIRAAEEDEYEGSPTFFRKVIDAVKKRMK.
Q82124_9RHAB/1-219             MAD.IEMSESLVLSHG.SLADLDKRLDN.APKDNRSALFSS..TSGSTRQKS...SSKKKPNPT...TLEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNRGKRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKADV-d
PHOSP_IHNVW/1-227              MSD.-GEGEQFFNLEGeDILRLESRLKT.PRNDGQIGKNPRrrKEDQAPQEEpkkTTRRPDKNKglsQLEQLILKYVEEESCQDALKDFGGLIANIRQAHQAEMTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENHSPLPKPLDPDQVKAARALGFGIGYRTALNVFDRIKGVTPDNAGSQEVKNLAIRAAEEDEYEGSPTFFRKVIDAVKKRMK.
D3J0Y6_9RHAB/1-227             MSD.-EEGEQFFNLEGeDILRLESRLKT.PRNDGQIGRNPRrrKEDQAPQEEpkkTTKRPDKNKglsQLEQLILKYVEEESCQDALKDFGGLIANIRQAHQAELTSHLEKVATEHRANLQALTKSQQEHEKVSKEILSAVIAIRSNLNENLSPLPKPLDPDQVKAARALGFGIGYRTALNVFDRIKGVTPDNAGSQEVKNMAIRAAEEDEYEGSPTFFRKVIDAVKKRMK.
Q9QJV8_9RHAB/1-219             MAD.IEMSESLVLSHG.SLADLDKRLDN.APKDNRSALFSS..TSGSTRQKS...SPKKKTNPT...TLEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKAELD.
Q4JFC2_9RHAB/1-219             MAD.IEMSESLVLSHG.SLADLDKRLDN.APKDNRSALFSS..TSGSTRQKS...SPKKKPNPT...TLEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKAELD.
Q9QBH8_9RHAB/1-219             MAD.IEMSESLVLSHG.SLADLDKKLDN.APKDNRSALFSS..TSGSTRQKS...SPKKKPNPT...TLEEIIGHFVPEDLQLDATKAFGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKAELD.
PHOSP_SHRV/1-219               MAEsIEMGEELVSSPS.TLLALKGKLENpSPDDATILGILG..KKTPTVKME...KGKGKGDP-...-IEAFLLEFVDERRQVEANKRLRQYIRQLKMSHQEELTAHLERASAENRANLKSMMESQAESNKTTKTILATLITLRDHVIEEGSKKPRGLDKDQIKLERALGFERGYSSAIAIVNQLKVTEPSQVCKPSVRAAALSAMEKGEFESSGEVFKAVVKRAKAELT.
Q9PWV3_9RHAB/1-219             MAD.IEMSESLVLSHG.SLADLDKKLDN.APKDNRSALFSS..PSESTRQKS...SPKKKPNPT...TLEEIIGHFVPEDLQLDATKALGQLLRRIKMSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILIAMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLALCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKAELD.
Q91CW9_9RHAB/1-219             MAD.IEMSESLVLSHG.SLADLDRRLDN.APKDTRSALFSS..SPGSSKQKP...SPKKKSTPT...TLEEIIGHFVPEDLQLDATKALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGERETYSTVSKAIKADLD.
PHOSP_HIRRV/1-227              MSD.-NEGEQFFDIPKnALDRVEARTMC.PREDGKVVRKQAplKEEPRLEAEqkrSPKKQEKPRgmlPLEQLVLKYVVVVCSLDALREFGGLIAQIRQSHQADMTRHLEAVATEHRANLQALTKSQQEHEKVSKEILSAVISIRSNLNENSSPRHKPLDLDQVNAERALGFGVGYRTALNVFGKLRGITPEEAGSQEVKNMAIREAEEDEYEGSRSFFKKVLDMVKKTMR.
Q82125_9RHAB/1-219             MTD.IEMSESLVLSHG.SLADLDRRLDN.APKDTRSALFSS..SPGSSKQKP...SPKKKSAPT...TLEEIIGHFVPEDLQLDATKALGQLLRRIKLSHQEELTQHLEKVNGENRAKMGALLESQKENGKKTDNILSILISMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLVLCKGSVKRAALSAMEKEEYDGGRETYSTVAKATKAELD.
#=GC seq_cons                  MuD.IEMuEpLVLSHG.SLADLD+RLDN.APKDsRuALFSS..sssso+QKs...SPKKKssPT...TLEElIGHFVsEDLQLDAsKAFGQLLRRIKhSHQEELTQHLEKVNsEpRAKMGALLESQKENGKKTDNILSILIuMRGEGAENASKKPKVLDGDQVRNERALGFNRGLTTAAIAMKKFKLEDPLsLCKGSVKRAALSAMEKEEYDGpRETYusVuKAlKA-lc.
//
DBGET integrated database retrieval system