GenomeNet

Database: Pfam
Entry: SSV1_ORF_D-335
LinkDB: SSV1_ORF_D-335
Original site: SSV1_ORF_D-335 
#=GF ID   SSV1_ORF_D-335
#=GF AC   PF07935.9
#=GF DE   ORF D-335-like protein
#=GF AU   Fenech M
#=GF SE   Pfam-B_4933 (release 14.0)
#=GF GA   21.60 21.60;
#=GF TC   22.10 44.60;
#=GF NC   20.00 21.20;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   1926776
#=GF RT   Complete nucleotide sequence of the virus SSV1 of the
#=GF RT   archaebacterium Sulfolobus shibatae. 
#=GF RA   Palm P, Schleper C, Grampp B, Yeats S, McWilliam P, Reiter WD,
#=GF RA   Zillig W; 
#=GF RL   Virology 1991;185:242-250.
#=GF DR   INTERPRO; IPR012922;
#=GF CC   The sequences featured in this family are similar to  a probable
#=GF CC   integrase (Swiss:P20214) expressed by the SSV1 virus of the
#=GF CC   archaebacterium Sulfolobus shibatae. This protein may be
#=GF CC   necessary for the integration of the virus into the host genome
#=GF CC   by a process of site-specific  recombination [1].
#=GF SQ   16
#=GS Q980Y3_SULSO/40-112  AC Q980Y3.1
#=GS F4B8Y8_ACIHW/5-70    AC F4B8Y8.1
#=GS Q975L1_SULTO/7-74    AC Q975L1.1
#=GS Q97ZN2_SULSO/16-83   AC Q97ZN2.1
#=GS Q975V7_SULTO/7-74    AC Q975V7.1
#=GS F9VNK0_SULTO/7-68    AC F9VNK0.1
#=GS Q97W98_SULSO/5-71    AC Q97W98.1
#=GS Q975S9_SULTO/7-76    AC Q975S9.1
#=GS Q97ZP9_SULSO/6-71    AC Q97ZP9.1
#=GS Q96YD8_SULTO/5-67    AC Q96YD8.1
#=GS Q980K4_SULSO/16-87   AC Q980K4.1
#=GS F4B753_ACIHW/14-49   AC F4B753.1
#=GS Q980M8_SULSO/7-80    AC Q980M8.1
#=GS VINT_SSV1/7-74       AC P20214.1
#=GS Q975X2_SULTO/14-79   AC Q975X2.1
#=GS F9VNR5_SULTO/5-70    AC F9VNR5.1
Q980Y3_SULSO/40-112             .a-FKCENIILRERKGRYYVYKLET.INGEVKETYVGPLADVVETYEKLKdsSGGVGV...SP.TwARw..dlNPG..SSPC--eg..........
F4B8Y8_ACIHW/5-70               ..VFTFGDIRIREVKGKYYVYLIEKgDGGQRRDHYIGSLDKIIETYVS--..IGGVGV...PP.T.VR.....GAG..FEPAR-a...........
Q975L1_SULTO/7-74               ..RYKFGEYILRERKGRYYVYKLET.INGEVKERYVAPLIDVVETYIKLK.eSGSVGV...SP.T.VR.....PPG..FEPGI-t...........
Q97ZN2_SULSO/16-83              ..RYKYGDIIIRERKGRYYVYKLEM.INGKVRETYVGPLIDVVESFIKLK.eIGGVGI...SP.T.TD.....PPG..FEPGTT............
Q975V7_SULTO/7-74               ..RYKFGNYILRERKGRYYAYKLET.INGEVKERYVGSLVDVVESYLKMK..LGVIRS...ILlQ.AD.....PPG..FEPGTT............
F9VNK0_SULTO/7-68               ..RYKFGDYILRERKGRYYVYKLKT.IKSEVNETYVGLLADVVETYLKLK..ESGVWG...TP.H.SA.....TAG..------i...........
Q97W98_SULSO/5-71               ..VFTFGDIRIREVKGKYYVYLIEKdSEGKRRDNYVGPLDEIVKGYMR--..--GTGF...EPvQ.A-.....---..------fasgasvrplcp
Q975S9_SULTO/7-76               ..RYKFGDYILRERKGRYYVYKLET.INGEVKERYVAPLIDVVETYIK--..IMGAGV...VPpQwARw..dlNPG..PPPR--qg..........
Q97ZP9_SULSO/6-71               ..RYKYGD-IIRERKGRYYVYKLET.INGEVKETYVGPLVDVVKTYEKLK..ENGVWV...SP.T.MG.....PLG..FEPRTS............
Q96YD8_SULTO/5-67               ..VFTFGDIRIREVKGKYYVYLIEKdNEGKRRDRYLGPLSEVVQFYVKMA..PRA-GL...EP.-.--.....---..------attgltar....
Q980K4_SULSO/16-87              ..HYKYGDIIIRERKGRYYVYKLEY.ENGNVKETYVDPLVDVVETYEKLKdsSGGFRGyppNP.T.TD.....PPG..FEPGTS............
F4B753_ACIHW/14-49              ..VFSAGQYKIRQRGKKYYVYLIEKhKDGNLRERTLAP------------..------...--.-.--.....---..------............
Q980M8_SULSO/7-80               kt--TNGDVIIRERKGKYYVYKLET.INGEVKETYVGPLADVVETYEKLKdsSGGVRV...SP.T.TWarwdlNPG..PPPCQ-g...........
VINT_SSV1/7-74                  ..RYKYGDYILRERKGRYYVYKLEY.ENGEVKERYVGPLADVVESYLKMK..LGVVGD...TPlQ.AD.....PPG..FEPGTS............
Q975X2_SULTO/14-79              ..VFSAGQYKIRQRGNKYYVYKIEKdSNGNVKETYVGPLDKIVEFYVS--..IGGVGV...SP.T.VD.....RPG..FEPGTS............
F9VNR5_SULTO/5-70               ..VFSAGQYKIRQRGKKYYVYKIEKdSNGNVKETYIGPLDKIVE--IA--..LGVLGG...VP.L.TQ.....WTGrdLNPG--pl..........
#=GC seq_cons                   ..hapaGDhIIRERKG+YYVYKLEp..NGcVKEpYVGPLsDVVEoYlKht...GGlGs...sP.p.sp.....ssG...pPs..............
//
DBGET integrated database retrieval system