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Database: Pfam
Entry: SSV1_ORF_D-335
LinkDB: SSV1_ORF_D-335
Original site: SSV1_ORF_D-335 
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#=GF ID   SSV1_ORF_D-335
#=GF AC   PF07935.6
#=GF DE   ORF D-335-like protein
#=GF AU   Fenech M
#=GF SE   Pfam-B_4933 (release 14.0)
#=GF GA   21.60 21.60;
#=GF TC   22.50 21.70;
#=GF NC   21.20 18.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   1926776
#=GF RT   Complete nucleotide sequence of the virus SSV1 of the
#=GF RT   archaebacterium Sulfolobus shibatae. 
#=GF RA   Palm P, Schleper C, Grampp B, Yeats S, McWilliam P, Reiter WD,
#=GF RA   Zillig W; 
#=GF RL   Virology 1991;185:242-250.
#=GF DR   INTERPRO; IPR012922;
#=GF CC   The sequences featured in this family are similar to	a probable
#=GF CC   integrase (Swiss:P20214) expressed by the SSV1 virus of the
#=GF CC   archaebacterium Sulfolobus shibatae. This protein may be
#=GF CC   necessary for the integration of the virus into the host genome
#=GF CC   by a process of site-specific  recombination [1].
#=GF SQ   65
#=GS F0NM68_SULIH/3-77    AC F0NM68.1
#=GS F0NFS9_SULIR/6-77    AC F0NFS9.1
#=GS D2PD58_SULID/18-86   AC D2PD58.1
#=GS F0NHT8_SULIR/4-72    AC F0NHT8.1
#=GS C3N561_SULIA/1-53    AC C3N561.1
#=GS D2PCR8_SULID/1-41    AC D2PCR8.1
#=GS Q975V7_SULTO/6-76    AC Q975V7.1
#=GS Q97ZN2_SULSO/15-85   AC Q97ZN2.1
#=GS F0NBL1_SULIR/4-70    AC F0NBL1.1
#=GS F4B753_ACIHW/13-49   AC F4B753.1
#=GS Q6TRV6_9VIRU/36-107  AC Q6TRV6.1
#=GS Q975L1_SULTO/6-76    AC Q975L1.1
#=GS D2PK34_SULID/6-77    AC D2PK34.1
#=GS Q975S9_SULTO/6-74    AC Q975S9.1
#=GS C3NMN7_SULIN/4-71    AC C3NMN7.1
#=GS Q975X2_SULTO/13-81   AC Q975X2.1
#=GS Q6UG89_SSV2/3-78     AC Q6UG89.1
#=GS F9VNR5_SULTO/4-74    AC F9VNR5.1
#=GS Q97W98_SULSO/4-73    AC Q97W98.1
#=GS C4KGR4_SULIK/1-51    AC C4KGR4.1
#=GS C3NGE0_SULIN/4-72    AC C3NGE0.1
#=GS Q980M8_SULSO/3-78    AC Q980M8.1
#=GS Q97ZP9_SULSO/5-73    AC Q97ZP9.1
#=GS F0NHM8_SULIR/3-77    AC F0NHM8.1
#=GS C3NDQ9_SULIY/1-46    AC C3NDQ9.1
#=GS B8H2Q3_CAUCN/28-102  AC B8H2Q3.1
#=GS C3NE15_SULIY/3-72    AC C3NE15.1
#=GS C3MR39_SULIL/4-72    AC C3MR39.1
#=GS INTG_SSV1/6-76       AC P20214.1
#=GS Q6TDM9_9VIRU/3-78    AC Q6TDM9.1
#=GS C3N737_SULIY/3-72    AC C3N737.1
#=GS F0NRA8_SULIH/4-70    AC F0NRA8.1
#=GS B5KLF8_9VIRU/4-79    AC B5KLF8.1
#=GS A8TKL2_SULIS/4-79    AC A8TKL2.1
#=GS Q96YD8_SULTO/4-70    AC Q96YD8.1
#=GS D1GF92_9VIRU/15-86   AC D1GF92.1
#=GS C3MPZ0_SULIL/6-77    AC C3MPZ0.1
#=GS C4KH81_SULIK/6-73    AC C4KH81.1
#=GS D2PJL9_SULID/1-46    AC D2PJL9.1
#=GS D0KSL4_SULS9/3-71    AC D0KSL4.1
#=GS Q980Y3_SULSO/39-110  AC Q980Y3.1
#=GS C3MPH9_SULIL/1-53    AC C3MPH9.1
#=GS F0NGW0_SULIR/1-53    AC F0NGW0.1
#=GS H2C866_9CREN/3-72    AC H2C866.1
#=GS A8TKH3_9VIRU/3-78    AC A8TKH3.1
#=GS Q980K4_SULSO/15-89   AC Q980K4.1
#=GS D1GF26_9VIRU/23-97   AC D1GF26.1
#=GS C3MSV0_SULIM/6-70    AC C3MSV0.1
#=GS C3MQ95_SULIL/4-70    AC C3MQ95.1
#=GS C3NHZ2_SULIN/1-46    AC C3NHZ2.1
#=GS A5GXX8_SULSF/6-77    AC A5GXX8.1
#=GS C3MY30_SULIM/6-77    AC C3MY30.1
#=GS C3MYG7_SULIM/1-53    AC C3MYG7.1
#=GS C3MK24_SULIL/4-73    AC C3MK24.1
#=GS C3MR28_SULIL/18-86   AC C3MR28.1
#=GS D1GF58_9VIRU/3-71    AC D1GF58.1
#=GS F9VNK0_SULTO/6-68    AC F9VNK0.1
#=GS C3N8T1_SULIY/4-71    AC C3N8T1.1
#=GS C3NHI3_SULIN/6-77    AC C3NHI3.1
#=GS F0NMD8_SULIH/6-77    AC F0NMD8.1
#=GS F4B8Y8_ACIHW/4-72    AC F4B8Y8.1
#=GS F0NPY2_SULIH/4-72    AC F0NPY2.1
#=GS F0NPF3_SULIH/1-53    AC F0NPF3.1
#=GS C3MY54_SULIM/6-78    AC C3MY54.1
#=GS Q9A9N3_CAUCR/28-102  AC Q9A9N3.1
F0NM68_SULIH/3-77               .......NFYVGSKFYVKEIKGKYYVYSIENGDDGKQRHTYIGSLENIVNFYINNLGn.niGGL..RG..CP..P.NQ.AFR......ACDPGS---npg....................................
F0NFS9_SULIR/6-77               .......RRYKFDDYLLRERKGRYYVYKLEY-ENGDAKETYVGPLADVAEKHIKLKDe..iGGV..GY..SP..-.QS.RGR......DLNPGP---lpy....................................
D2PD58_SULID/18-86              .......RVFSAGQYKIHQRGKKYYVYKIEKDNEGNRRDHYVGPLDKVVKITLGV-L....GGV..--..PP..N.TV.DRP......GFEPGTSR-m......................................
F0NHT8_SULIR/4-72               .......KVFTFGDIRIREVKGKYYVYVIEKNKDGQRTDCYVGPLDKVIEFYVSS--....GGL..GV..SL..-.EW.TGR......DLNPGP---lgc....................................
C3N561_SULIA/1-53               .......---------------------MET-INDEIKERYVGPLADVVKTYIKLKE...kEGVlgGG..IP..L.TM.GPP......GFEPGTTS-v......................................
D2PCR8_SULID/1-41               .....mi----------------------KK-NNGKRRDRYVGSLDKVVEFYVSN--....GGV..GV..SP..Y.SA.A--......---------agi....................................
Q975V7_SULTO/6-76               .......RRYKFGNYILRERKGRYYAYKLET-INGEVKERYVGSLVDVVESYLKMKL....GVI..RS..IL..L.QA.DPP......GFEPGTTGS.......................................
Q97ZN2_SULSO/15-85              ......t-RYKYGDIIIRERKGRYYVYKLEM-INGKVRETYVGPLIDVVESFIKLKE...iGGV..GI..SP..-.TT.DPP......GFEPGTTGS.......................................
F0NBL1_SULIR/4-70               .......KVFTFGDIRIREVKGKYYVYIIEKGEDGQRRDNYIGSLEQIVNEYYDMKC....RGR..DL..NP..-.--.---......---------ghglerpaff.............................
F4B753_ACIHW/13-49              .......RVFSAGQYKIRQRGKKYYVYLIEKHKDGNLRERTLAP-------------....---..--..--..-.--.---......---------.......................................
Q6TRV6_9VIRU/36-107             .......KVFTFGDIRIREVKGKYYVYLIEKDNEGNRRDHYVGSLDQIVKDYISIKV....RGT..GF..EP..A.QA.FAS......G--------asvrpmgd...............................
Q975L1_SULTO/6-76               .......RRYKFGEYILRERKGRYYVYKLET-INGEVKERYVAPLIDVVETYIKLKE...sGSV..GV..SP..-.TV.RPP......GFEPGITG-l......................................
D2PK34_SULID/6-77               .......RRYKFGDYILRERKGRYYVYKLET-INGEVKETYVGSLIDIVESYLKLKNs..sGGV..GV..SP..-.TT.DPP......GFEPGTTGS.......................................
Q975S9_SULTO/6-74               .......RRYKFGDYILRERKGRYYVYKLET-INGEVKERYVAPLIDVVETYIKI--....MGA..GV..VP..P.QW.ARW......DLNPGPPP-r......................................
C3NMN7_SULIN/4-71               .......KTYTFGDIRIREVKGKYYVYIIEKDNEGNRRDHYIGPLDKIVEFYISS--....GGL..EG..TP..-.NG.GSK......GT-------pyrsgl.................................
Q975X2_SULTO/13-81              .......RVFSAGQYKIRQRGNKYYVYKIEKDSNGNVKETYVGPLDKIVEFYVSI--....GGV..GV..SP..-.TV.DRP......GFEPGTSR-m......................................
Q6UG89_SSV2/3-78                .......NFYVGSKFYVKEIKGKYYVYSIENGDDGKQRHTYIGSLEQIVNEYYDMKCg..rRDL..NP..GS..P.AW.EAGi....rGTPPKTPD-a......................................
F9VNR5_SULTO/4-74               .......RVFSAGQYKIRQRGKKYYVYKIEKDSNGNVKETYIGPLDKIVEIALGV--....--L..GG..VP..LtQW.TGR......DLNPGP---lgckp..................................
Q97W98_SULSO/4-73               .......KVFTFGDIRIREVKGKYYVYLIEKDSEGKRRDNYVGPLDEIVKGYMRG--....TG-..--..--..-.--.---......---------fepvqafasgasvrplcpss...................
C4KGR4_SULIK/1-51               .......---------------------MET-INGEIKERYVGPLADVVETYLKEKE....GVL..GG.fLP..L.TM.GPP......GFEPGTTS-v......................................
C3NGE0_SULIN/4-72               .......RVFSAGQYKIRQRGKKYYVHKIEKDNEGNRRDHYVGPLDKVVKITLGV--....--L..GG..VP..PnAV.DRP......GFEPGTSR-m......................................
Q980M8_SULSO/3-78               .refpkt---TNGDVIIRERKGKYYVYKLET-INGEVKETYVGPLADVVETYEKLKDs..sGGV..RV..SP..T.TW.ARW......DLNPGPPPC.......................................
Q97ZP9_SULSO/5-73               ......s-RYKYGDI-IRERKGRYYVYKLET-INGEVKETYVGPLVDVVKTYEKLKE....NGV..WV..SP..-.TM.GPL......GFEPRTSA-s......................................
F0NHM8_SULIR/3-77               .......NFYVGSKFYVKEIKGKYYVYSIENGDDGKQRHTYIGSLENIVNFYINNLGn.niGGL..RG..CP..P.NQ.AFR......ACDPGS---npg....................................
C3NDQ9_SULIY/1-46               .......---------------------MET-INGEVKERYVGPLADVVESYLKLKEsngiGGV..GG..TP..H.NG.A--......---------agi....................................
B8H2Q3_CAUCN/28-102             afgdgas-------FLRRERKGRYYWYVRSPQSQGERRERYLG--------------....---..--..--..-.--.---......---------letpellqtieqakqvksasegrrmlvrvlraaglhapd
C3NE15_SULIY/3-72               .......SFYVNSKFYVKEIKGKYYVYSIEKDDGGKQRHHYVAPLDKIIETYVSI--....GGV..GV..PP..T.KV.AGQ......GFEPW----sqgp...................................
C3MR39_SULIL/4-72               .......KVFTFGDIRIREVKGKYYVYKIEKDNEGNRKDHYVGPLDKVVKITLGV--....--L..GG..VP..PnAV.DRP......GFEPGTSR-m......................................
INTG_SSV1/6-76                  ......t-RYKYGDYILRERKGRYYVYKLEY-ENGEVKERYVGPLADVVESYLKMKL....GVV..GD..TP..L.QA.DPP......GFEPGTSGS.......................................
Q6TDM9_9VIRU/3-78               .......SFYVGSNFYIKEIKGKYYVYSIEKGEDNKQRHHYIAPLDKVIEFYISN--....GGL..RG..YP..P.NG.GVGvpptmgACRAPDP--gs.....................................
C3N737_SULIY/3-72               .......SFYVNSKFYVKEIKGKYYVYSIEKDDGGKQRHNYIAPLDKIIETYVNI--....GGV..GD..SP..T.KV.AGQ......GFEPW----sqgp...................................
F0NRA8_SULIH/4-70               .......KVFIFGDIRIREVKGKYYVYIIEKGEDGQRRDNYVGSLEQIVNEYYDMKC....RGR..DL..NP..-.--.---......---------ghglerpaff.............................
B5KLF8_9VIRU/4-79               .......KVFTFGDIRIREVKGKYYVYLIEKDNEGNRRDNYIGKLDEVVKFYTKNAK...tGVV..GA..LP..P.QG.SGPw...dqGSNP-----cpats..................................
A8TKL2_SULIS/4-79               .......KVFTFGDIRIREVKGKYYVYIIEKDNEGNRRDNYIGSLEQIVKEYYDMKC....RGR..DL..NP..G.HGlERPa...lgGTPPKTPT-a......................................
Q96YD8_SULTO/4-70               .......KVFTFGDIRIREVKGKYYVYLIEKDNEGKRRDRYLGPLSEVVQFYVKMAP...rAGL..E-..-P..-.--.---......---------attgltarrsa............................
D1GF92_9VIRU/15-86              ......t-RYKYGDIILRERKGRYYIYKLET-INGETKETYVGPLIDVVESYLKMKE...iGVL..GV..SP..N.VA.GPP......GFEPGTY--gl.....................................
C3MPZ0_SULIL/6-77               .......RRYKFGDYILRERKGRYYVYKLET-INGEIKERYVGSLIDVVESYLKLKNs..sGGV..GV..SP..-.TT.DPP......GFEPGTTGS.......................................
C4KH81_SULIK/6-73               .......RRYKFDDYILRERKGRYYVYKLET-INGEIKERYVGPLTDVVEFYIRS--....GGV..GV..SP..-.TT.DPP......GFEPGTTGS.......................................
D2PJL9_SULID/1-46               .......---------------------MET-INGEVKERYVGPLADVVESYLKLKEsngiGGV..GG..TP..H.NG.A--......---------agi....................................
D0KSL4_SULS9/3-71               .......SFYVNSNFYIKEIKGKYYVYLIEKDNGNKRRHNYVGPLDKIIESYIG---....-GV..GV..SPiiP.KC.RGR......DLNPG----hgl....................................
Q980Y3_SULSO/39-110             .......RAFKCENIILRERKGRYYVYKLET-INGEVKETYVGPLADVVETYEKLKDs..sGGV..GV..SP..-.TW.ARW......DLNPGSSPC.......................................
C3MPH9_SULIL/1-53               .......---------------------MET-INGEVKERYVGPLADVVEAYLKLKEsngiGGV..G-..VP..P.TM.GPP......GFEPGTTS-v......................................
F0NGW0_SULIR/1-53               .......---------------------MET-INGEVKERYVGPLADVVKTYIKLKE...kEGV..LGefLP..L.TM.GPP......GFEPGTTS-v......................................
H2C866_9CREN/3-72               .......SFYVNSKFYVKEIKGKYYVYSIEKDDGGKQRHNYIAPLDKIIETYVNI--....GGV..GE..SP..T.KV.AGL......GFEPRS---qgp....................................
A8TKH3_9VIRU/3-78               .......NFYVGSKFYVKEIKGKYYVYSIENGDDGKQRHTYIGSLEQIVNEYYDMKC....RGR..DL..NP..G.HGlERPa...lgGTPPKTPT-a......................................
Q980K4_SULSO/15-89              .......HHYKYGDIIIRERKGRYYVYKLEY-ENGNVKETYVDPLVDVVETYEKLKDs..sGGF..RG..YP..P.NP.TTDp....pGFEPGTSGS.......................................
D1GF26_9VIRU/23-97              .......KVFTFGDIRIREVKGKYYVYLIEKDNEGNRRDNYVGKLDEVVRFYIKNAK...tGVV..GA..FP..P.QG.SGPw...dqGSN------pcpat..................................
C3MSV0_SULIM/6-70               .......RRYKFDDYLLRERKGRYYVYKLEY-ENGDAKETYVGPLADVAEKHIKLKDe..iGGV..GG..TP..H.KA.A--......---------agi....................................
C3MQ95_SULIL/4-70               .......KVFTFGDIRIREVKGKYYVYLIEKGDGGQRRDRYVGSLDKVVE--IAL--....-GV..WG..NP..P.LC.GRR......DLNPGSPA-w......................................
C3NHZ2_SULIN/1-46               .......---------------------MET-INGEVKERYVGPLADVVESYLKLKEsngiGGV..GG..TP..H.NG.A--......---------agi....................................
A5GXX8_SULSF/6-77               .......RRYKFGDYILRERKGRYYVYKLEY-ENGNAKETYVGPLVDVVETYEKLKM...eLGV..WG..YP..P.QR.TRR......DLNPGPP--ap.....................................
C3MY30_SULIM/6-77               .......RRYKFGDYLLRERKGRYYVYKLET-INGEIKERYVGPLTDVVESYLKEKE....GVL..GG.fLP..L.TT.DPP......GFEPGTTGS.......................................
C3MYG7_SULIM/1-53               .......---------------------MET-INDEIKERYVGPLADVVKTYIKLKE...kEGVlgGG..IP..L.TM.GPP......GFEPGTTS-v......................................
C3MK24_SULIL/4-73               .......KVFTFGDIRIREVKGKYYVYLIEKDNEGNRRDHYVGSLDQIVKEYMRG--....TG-..--..--..-.--.---......---------fepaqafasgasvrplcpds...................
C3MR28_SULIL/18-86              .......RVFSAGQYKIRQRGKKYYVYKIEKDNEGNRKDHYVGPLDKVVKITLGV--....--L..GG..VP..PnAV.DRP......GFEPGTSR-m......................................
D1GF58_9VIRU/3-71               .......NFYVGSKFYVKEIKGKYYVYSIENGDDGKQRHTYIGSLEQIITSYLEL--....-GV..WG..VP..P.QC.GRR......DLNPGSPA-w......................................
F9VNK0_SULTO/6-68               .......RRYKFGDYILRERKGRYYVYKLKT-IKSEVNETYVGLLADVVETYLKLKE....SGV..WG..TP..H.SA.T--......---------agi....................................
C3N8T1_SULIY/4-71               .......KTYTFGDIRIREVKGKYYVYIIEKDNEGNRRDHYIGPLDKIVEFYISS--....GGL..EG..TP..-.NG.GSK......GT-------pyrsgl.................................
C3NHI3_SULIN/6-77               .......RRYKFGDYILRERKGRYYVYKLET-INGEVKERYVGPLADVVESYLKLKNs..sGGV..GV..-P..P.TT.DPP......GFEPGTTGS.......................................
F0NMD8_SULIH/6-77               .......RRYKFDDYLLRERKGRYYVYKLEY-ENGDAKETYVGPLADVAEKHIKLKDe..iGGV..GY..SP..-.QS.RGR......DLNPGP---lpy....................................
F4B8Y8_ACIHW/4-72               .......KVFTFGDIRIREVKGKYYVYLIEKGDGGQRRDHYIGSLDKIIETYVSI--....GGV..GV..PP..-.TV.RGA......GFEPARA--ya.....................................
F0NPY2_SULIH/4-72               .......KVFTFGDIRIREVKGKYYVYVIEKDKDGQRTDCYVGPLDKVIEFYVSS--....GGL..GV..SP..-.EW.TGR......DLNPGP---lgc....................................
F0NPF3_SULIH/1-53               .......---------------------MET-INGEVKERYVGPLADVVKTYIKLKE...kEGV..LGefLP..L.TM.GPP......GFEPGTTS-v......................................
C3MY54_SULIM/6-78               .......RRYKFGDYILRERKGRYYVYKLET-INGEIKERYVGPLTDVVETYIKLKNg..iGGV..GD..EP..P.LW.ARW......DLNPGPPPC.......................................
Q9A9N3_CAUCR/28-102             afgdgas-------FLRRERKGRYYWYVRSPQSQGERRERYLG--------------....---..--..--..-.--.---......---------letpellqtieqakqvksasegrrmlvrvlraaglhapd
#=GC seq_cons                   .......phaphuchhlREhKG+YYVYhlEp.psGch+-pYVGPLscVVEpYlchh.....uGl..ss..sP....ps.s........shpPss...h......................................
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