GenomeNet

Database: Pfam
Entry: Sialidase_penC
LinkDB: Sialidase_penC
Original site: Sialidase_penC 
#=GF ID   Sialidase_penC
#=GF AC   PF12135.7
#=GF DE   Sialidase enzyme penultimate C terminal domain
#=GF AU   Mistry J, Gavin OL
#=GF SE   pdb_2vo8
#=GF GA   20.40 20.40;
#=GF TC   20.50 20.70;
#=GF NC   20.20 19.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   18716000
#=GF RT   Structural basis of Clostridium perfringens toxin complex
#=GF RT   formation.
#=GF RA   Adams JJ, Gregg K, Bayer EA, Boraston AB, Smith SP;
#=GF RL   Proc Natl Acad Sci U S A. 2008;105:12194-12199.
#=GF DR   INTERPRO; IPR021984;
#=GF CC   This domain is found in bacteria and eukaryotes, and is about 30
#=GF CC   amino acids in length. The protein from which this domain is
#=GF CC   found is a sialidase enzyme which is used by virulent bacteria
#=GF CC   as a toxin. It is the penultimate C terminal domain.
#=GF SQ   24
#=GS W7B0S0_PLAVN/1607-1631  AC W7B0S0.1
#=GS Q4XD88_PLACH/48-72      AC Q4XD88.1
#=GS W7B0S0_PLAVN/1719-1743  AC W7B0S0.1
#=GS Q8XMY5_CLOPE/975-998    AC Q8XMY5.1
#=GS W7B0S0_PLAVN/1557-1581  AC W7B0S0.1
#=GS Q4XD88_PLACH/23-47      AC Q4XD88.1
#=GS Q4YTY6_PLABA/1951-1974  AC Q4YTY6.1
#=GS Q4YTY6_PLABA/2051-2075  AC Q4YTY6.1
#=GS W7B0S0_PLAVN/1644-1667  AC W7B0S0.1
#=GS Q7RTC2_PLAYO/979-1002   AC Q7RTC2.1
#=GS Q4YTY6_PLABA/1926-1950  AC Q4YTY6.1
#=GS Q4YTY6_PLABA/2026-2050  AC Q4YTY6.1
#=GS W7B0S0_PLAVN/1694-1718  AC W7B0S0.1
#=GS Q4XD88_PLACH/73-97      AC Q4XD88.1
#=GS Q8XKN0_CLOPE/1272-1295  AC Q8XKN0.1
#=GS Q7RTC2_PLAYO/1053-1077  AC Q7RTC2.1
#=GS Q4YTY6_PLABA/1976-2000  AC Q4YTY6.1
#=GS W7B0S0_PLAVN/1582-1605  AC W7B0S0.1
#=GS Q4YTY6_PLABA/2001-2025  AC Q4YTY6.1
#=GS Q4XD88_PLACH/173-197    AC Q4XD88.1
#=GS Q4XD88_PLACH/123-147    AC Q4XD88.1
#=GS Q7RTC2_PLAYO/1028-1052  AC Q7RTC2.1
#=GS Q4XD88_PLACH/148-172    AC Q4XD88.1
#=GS Q7RTC2_PLAYO/954-978    AC Q7RTC2.1
W7B0S0_PLAVN/1607-1631             .FPDSEVYTPKQEYFHNNEIYQLNGI
Q4XD88_PLACH/48-72                 .FPDSEVCIPKQEYFHNNEIYQLNGI
W7B0S0_PLAVN/1719-1743             .FPGNEIYTTEQEGSLDEEIYSLNGI
Q8XMY5_CLOPE/975-998               .-GDTEVYSAEYLFEYNVEAFILNEI
W7B0S0_PLAVN/1557-1581             .FPNTQLYESNNEMYQNREIYSGNQI
Q4XD88_PLACH/23-47                 .SPNTQLYESNNEMYQNRGIYNCDQI
Q4YTY6_PLABA/1951-1974             .FSNGEIFTPKQGYFKNNEIYPLNE-
Q4YTY6_PLABA/2051-2075             .FSDNEVYNPKHEVEKNDEIYALNEV
W7B0S0_PLAVN/1644-1667             l-SNNEVCTPKHEIEQYEEIYPLTG-
Q7RTC2_PLAYO/979-1002              .YQDREIYNYD-QIYQNREIYNYDQI
Q4YTY6_PLABA/1926-1950             .FPNPQLYASNNEIDQNREIYNYNQI
Q4YTY6_PLABA/2026-2050             .FSDNEVYNPKREVEQNDETYSLTGI
W7B0S0_PLAVN/1694-1718             .FPDNEVYTTEKIGSPDEKIYPLNEI
Q4XD88_PLACH/73-97                 .FPGSEVYSPKQEYSYNNDIYQLYGM
Q8XKN0_CLOPE/1272-1295             .-EDLSAYAAEFTLKYNPEVFDLVEV
Q7RTC2_PLAYO/1053-1077             .FSDNEIRSSEHEIEQSDEVYSLNGI
Q4YTY6_PLABA/1976-2000             .SSNSEVYSSEHEIEQNDETYSLTGI
W7B0S0_PLAVN/1582-1605             .FPDSEVYTPKQEYSHNNEIYQLNG-
Q4YTY6_PLABA/2001-2025             .FSDNEVYNPKREVEQNDEIYSLNGI
Q4XD88_PLACH/173-197               .FSDNETYITEHIGSLNEEICPLNEV
Q4XD88_PLACH/123-147               l-SDCEVCTPKYEIEQNEEIYPLNGI
Q7RTC2_PLAYO/1028-1052             .SSNSEVYSSEHEIEQNDEVYSLSGI
Q4XD88_PLACH/148-172               .FSDNEIYITEQKGSLDKEIYPLTGV
Q7RTC2_PLAYO/954-978               .FPNPQLYAFDNEIYQNREIYNYDQM
#=GC seq_cons                      .FsssElYsscpEhppNcEIYsLstI
//
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