GenomeNet

Database: Pfam
Entry: Sialidase_penC
LinkDB: Sialidase_penC
Original site: Sialidase_penC 
#=GF ID   Sialidase_penC
#=GF AC   PF12135.6
#=GF DE   Sialidase enzyme penultimate C terminal domain
#=GF AU   Mistry J, Gavin OL
#=GF SE   pdb_2vo8
#=GF GA   20.40 20.40;
#=GF TC   20.50 20.70;
#=GF NC   20.20 19.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   18716000
#=GF RT   Structural basis of Clostridium perfringens toxin complex
#=GF RT   formation.
#=GF RA   Adams JJ, Gregg K, Bayer EA, Boraston AB, Smith SP;
#=GF RL   Proc Natl Acad Sci U S A. 2008;105:12194-12199.
#=GF DR   INTERPRO; IPR021984;
#=GF CC   This domain is found in bacteria and eukaryotes, and is about 30
#=GF CC   amino acids in length. The protein from which this domain is
#=GF CC   found is a sialidase enzyme which is used by virulent bacteria
#=GF CC   as a toxin. It is the penultimate C terminal domain.
#=GF SQ   25
#=GS W7B0S0_PLAVN/1607-1631    AC W7B0S0.1
#=GS Q4XD88_PLACH/48-72        AC Q4XD88.1
#=GS W7B0S0_PLAVN/1719-1743    AC W7B0S0.1
#=GS Q8XMY5_CLOPE/975-998      AC Q8XMY5.1
#=GS W7B0S0_PLAVN/1557-1581    AC W7B0S0.1
#=GS Q4XD88_PLACH/23-47        AC Q4XD88.1
#=GS Q4YTY6_PLABA/1951-1974    AC Q4YTY6.1
#=GS Q4YTY6_PLABA/2051-2075    AC Q4YTY6.1
#=GS W7B0S0_PLAVN/1644-1667    AC W7B0S0.1
#=GS Q7RTC2_PLAYO/979-1002     AC Q7RTC2.1
#=GS Q4YTY6_PLABA/1926-1950    AC Q4YTY6.1
#=GS Q4YTY6_PLABA/2026-2050    AC Q4YTY6.1
#=GS W7B0S0_PLAVN/1694-1718    AC W7B0S0.1
#=GS Q4XD88_PLACH/73-97        AC Q4XD88.1
#=GS Q8XKN0_CLOPE/1272-1295    AC Q8XKN0.1
#=GS Q7RTC2_PLAYO/1053-1077    AC Q7RTC2.1
#=GS Q4YTY6_PLABA/1976-2000    AC Q4YTY6.1
#=GS W7B0S0_PLAVN/1582-1605    AC W7B0S0.1
#=GS Q4YTY6_PLABA/2001-2025    AC Q4YTY6.1
#=GS Q4XD88_PLACH/173-197      AC Q4XD88.1
#=GS Q4XD88_PLACH/123-147      AC Q4XD88.1
#=GS A0A081I900_PLAVN/197-221  AC A0A081I900.1
#=GS Q7RTC2_PLAYO/1028-1052    AC Q7RTC2.1
#=GS Q4XD88_PLACH/148-172      AC Q4XD88.1
#=GS Q7RTC2_PLAYO/954-978      AC Q7RTC2.1
W7B0S0_PLAVN/1607-1631               .FPDSEVYTPKQEYFHNNEIYQLNGI
Q4XD88_PLACH/48-72                   .FPDSEVCIPKQEYFHNNEIYQLNGI
W7B0S0_PLAVN/1719-1743               .FPGNEIYTTEQEGSLDEEIYSLNGI
Q8XMY5_CLOPE/975-998                 .-GDTEVYSAEYLFEYNVEAFILNEI
W7B0S0_PLAVN/1557-1581               .FPNTQLYESNNEMYQNREIYSGNQI
Q4XD88_PLACH/23-47                   .SPNTQLYESNNEMYQNRGIYNCDQI
Q4YTY6_PLABA/1951-1974               .FSNGEIFTPKQGYFKNNEIYPLNE-
Q4YTY6_PLABA/2051-2075               .FSDNEVYNPKHEVEKNDEIYALNEV
W7B0S0_PLAVN/1644-1667               l-SNNEVCTPKHEIEQYEEIYPLTG-
Q7RTC2_PLAYO/979-1002                .YQDREIYNYD-QIYQNREIYNYDQI
Q4YTY6_PLABA/1926-1950               .FPNPQLYASNNEIDQNREIYNYNQI
Q4YTY6_PLABA/2026-2050               .FSDNEVYNPKREVEQNDETYSLTGI
W7B0S0_PLAVN/1694-1718               .FPDNEVYTTEKIGSPDEKIYPLNEI
Q4XD88_PLACH/73-97                   .FPGSEVYSPKQEYSYNNDIYQLYGM
Q8XKN0_CLOPE/1272-1295               .-EDLSAYAAEFTLKYNPEVFDLVEV
Q7RTC2_PLAYO/1053-1077               .FSDNEIRSSEHEIEQSDEVYSLNGI
Q4YTY6_PLABA/1976-2000               .SSNSEVYSSEHEIEQNDETYSLTGI
W7B0S0_PLAVN/1582-1605               .FPDSEVYTPKQEYSHNNEIYQLNG-
Q4YTY6_PLABA/2001-2025               .FSDNEVYNPKREVEQNDEIYSLNGI
Q4XD88_PLACH/173-197                 .FSDNETYITEHIGSLNEEICPLNEV
Q4XD88_PLACH/123-147                 l-SDCEVCTPKYEIEQNEEIYPLNGI
A0A081I900_PLAVN/197-221             .FPNTQIYESNNEMYQDWEMYSGNQI
Q7RTC2_PLAYO/1028-1052               .SSNSEVYSSEHEIEQNDEVYSLSGI
Q4XD88_PLACH/148-172                 .FSDNEIYITEQKGSLDKEIYPLTGV
Q7RTC2_PLAYO/954-978                 .FPNPQLYAFDNEIYQNREIYNYDQM
#=GC seq_cons                        .FsssElYsscpEhppNcEIYsLNtI
//
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