#=GF ID Surfac_D-trimer
#=GF AC PF09006.6
#=GF DE Lung surfactant protein D coiled-coil trimerisation
#=GF AU Mistry J, Sammut SJ
#=GF SE pdb_1m7l
#=GF GA 20.70 20.70;
#=GF TC 20.70 20.80;
#=GF NC 20.60 20.00;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF RN [1]
#=GF RM 12495025
#=GF RT Solution structure of the coiled-coil trimerization domain from
#=GF RT lung surfactant protein D.
#=GF RA Kovacs H, O'Ddonoghue SI, Hoppe HJ, Comfort D, Reid KB, Campbell
#=GF RA D, Nilges M;
#=GF RL J Biomol NMR. 2002;24:89-102.
#=GF DR INTERPRO; IPR015097;
#=GF CC This domain, predominantly found in lung surfactant protein D,
#=GF CC forms a triple-helical parallel coiled coil, and mediates
#=GF CC trimerisation of the protein [1].
#=GF SQ 72
#=GS Q6IRS7_RAT/223-268 AC Q6IRS7.1
#=GS F7BZK8_MONDO/224-269 AC F7BZK8.1
#=GS G3VN93_SARHA/127-151 AC G3VN93.1
#=GS SFTPD_PIG/224-269 AC Q9N1X4.1
#=GS SFTPD_PIG/224-269 DR PDB; 4DN8 A; 204-249;
#=GS F6RQB6_MONDO/169-214 AC F6RQB6.1
#=GS CONG_BOVIN/218-263 AC P23805.2
#=GS G1Q512_MYOLU/228-273 AC G1Q512.1
#=GS G1QER4_MYOLU/58-85 AC G1QER4.1
#=GS D3YTT8_MOUSE/38-82 AC D3YTT8.1
#=GS G1PYW5_MYOLU/225-270 AC G1PYW5.1
#=GS CL43_BOVIN/167-212 AC P42916.2
#=GS F6RQA8_MONDO/228-261 AC F6RQA8.1
#=GS Q9XSP4_PIG/1-16 AC Q9XSP4.1
#=GS H0VA63_CAVPO/224-269 AC H0VA63.1
#=GS F6ZNR8_ORNAN/175-220 AC F6ZNR8.1
#=GS E2R8I4_CANFA/107-152 AC E2R8I4.1
#=GS CL46_BOVIN/218-263 AC Q8MHZ9.1
#=GS G3VKV6_SARHA/226-271 AC G3VKV6.1
#=GS E2QWQ4_CANFA/235-273 AC E2QWQ4.1
#=GS SFTPD_HUMAN/224-269 AC P35247.3
#=GS SFTPD_HUMAN/224-269 DR PDB; 3G84 A; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RIE C; 211-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3IKR B; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 1B08 A; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2GGX B; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2OS9 C; 206-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2ORK B; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 1B08 B; 1205-1249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 1PWB A; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RIE A; 211-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RIA C; 210-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RIB B; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2ORJ C; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 1M7L A; 5-38;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2OS9 A; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3IKN C; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2GGU A; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3G84 B; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2ORK C; 206-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2OS9 B; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3IKP A; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3IKQ B; 210-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3IKQ A; 210-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2GGX A; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3IKN B; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RIC A; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 1B08 C; 2208-2249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RIC C; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3G84 C; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3G81 C; 206-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2GGU C; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 1PW9 B; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RIB C; 206-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RID A; 209-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3IKP C; 206-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RIA B; 210-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 1M7L B; 45-78;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2ORK A; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 1PWB B; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3G81 B; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 1PW9 C; 206-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2GGX C; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2ORJ B; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3IKP B; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 1PWB C; 206-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RIB A; 206-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3IKN A; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3DBZ B; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 1PW9 A; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2GGU B; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3IKR C; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RIC B; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3DBZ A; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3G83 A; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3IKQ C; 211-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3G81 A; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RID C; 207-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RIE B; 208-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3IKR A; 204-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3DBZ C; 206-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3G83 B; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RID B; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 3G83 C; 206-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2RIA A; 210-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 2ORJ A; 205-249;
#=GS SFTPD_HUMAN/224-269 DR PDB; 1M7L C; 85-118;
#=GS E2QWR0_CANFA/224-269 AC E2QWR0.1
#=GS B7FEK7_BOVIN/167-212 AC B7FEK7.1
#=GS G1Q3F7_MYOLU/104-140 AC G1Q3F7.1
#=GS G1NV76_MYOLU/228-273 AC G1NV76.1
#=GS E1BEZ9_BOVIN/218-263 AC E1BEZ9.2
#=GS H9G9K9_ANOCA/222-267 AC H9G9K9.1
#=GS G7PEY0_MACFA/224-269 AC G7PEY0.1
#=GS F6QP69_CALJA/71-102 AC F6QP69.1
#=GS G1P0I8_MYOLU/224-262 AC G1P0I8.1
#=GS G3CH39_XENLA/122-167 AC G3CH39.1
#=GS H2NAF9_PONAB/224-269 AC H2NAF9.1
#=GS SFTPD_RAT/223-268 AC P35248.1
#=GS D2HJF9_AILME/224-269 AC D2HJF9.1
#=GS F6ZNY9_ORNAN/224-269 AC F6ZNY9.1
#=GS E7DSS8_BUBBU/8-53 AC E7DSS8.1
#=GS F6RQ99_MONDO/232-264 AC F6RQ99.1
#=GS F7DJE3_HORSE/224-269 AC F7DJE3.1
#=GS F1PYK1_CANFA/108-153 AC F1PYK1.1
#=GS F1MFY6_BOVIN/167-212 AC F1MFY6.2
#=GS G3SPS7_LOXAF/224-269 AC G3SPS7.1
#=GS G7N227_MACMU/224-269 AC G7N227.1
#=GS G9KNG5_MUSPF/74-119 AC G9KNG5.1
#=GS H9KY39_CALJA/1-16 AC H9KY39.1
#=GS F1P564_CHICK/88-133 AC F1P564.1
#=GS I0CF13_SHEEP/8-53 AC I0CF13.1
#=GS G3HQ12_CRIGR/184-229 AC G3HQ12.1
#=GS G3R0R1_GORGO/224-269 AC G3R0R1.1
#=GS G3FGP5_CHICK/104-149 AC G3FGP5.1
#=GS F6ZP03_ORNAN/228-273 AC F6ZP03.1
#=GS G1P819_MYOLU/226-271 AC G1P819.1
#=GS G1PZF8_MYOLU/224-269 AC G1PZF8.1
#=GS H9KWY4_CALJA/234-279 AC H9KWY4.1
#=GS G1TK26_RABIT/157-202 AC G1TK26.1
#=GS Q98TA4_CHICK/104-149 AC Q98TA4.1
#=GS F7BZJ1_MONDO/170-215 AC F7BZJ1.1
#=GS G5C4H5_HETGA/224-269 AC G5C4H5.1
#=GS G1QC23_MYOLU/109-145 AC G1QC23.1
#=GS F6T2L3_MONDO/63-104 AC F6T2L3.1
#=GS G1Q5Q5_MYOLU/224-269 AC G1Q5Q5.1
#=GS F7CIY3_MONDO/216-261 AC F7CIY3.1
#=GS A9UMI8_XENTR/101-146 AC A9UMI8.1
#=GS SFTPD_MOUSE/223-268 AC P50404.1
#=GS H9KYA7_CALJA/1-16 AC H9KYA7.1
#=GS F1NKG3_CHICK/104-149 AC F1NKG3.1
#=GS G1QAB4_MYOLU/85-122 AC G1QAB4.1
#=GS G1RIC2_NOMLE/224-269 AC G1RIC2.1
#=GS Q9XSQ2_SHEEP/1-16 AC Q9XSQ2.1
#=GS H0WYK2_OTOGA/224-269 AC H0WYK2.1
#=GS SFTPD_MACMU/224-269 AC Q1PBC5.1
#=GS E7DSS9_BOSTR/8-53 AC E7DSS9.1
#=GS SFTPD_BOVIN/218-263 AC P35246.2
#=GS B7ZTQ7_XENTR/101-146 AC B7ZTQ7.1
Q6IRS7_RAT/223-268 ..................SAALRQQMEALNGKLQRLEAAFSRYKKAALFPDGQSVGDKIFRAAN.....
F7BZK8_MONDO/224-269 ..................INSLKQQVATLQEQVKILQTSFSKYKNAELFPSGRAVGETIFKTS-s....
G3VN93_SARHA/127-151 ..............armv-------------------------KRVALFPSGRAVGKKIFKTTG.....
SFTPD_PIG/224-269 ..................ITALRQQVETLQGQVQRLQKAFSQYKKVELFPNGRGVGEKIFKTGG.....
#=GR SFTPD_PIG/224-269 SS ..................-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETTEEEEEEE.....
F6RQB6_MONDO/169-214 ................pn--ELEQQVPELHKQVENLQKRLSKQQKVDLFPNGQAHGKKIYKTTG.....
CONG_BOVIN/218-263 ..................VNALKQRVTILDGHLRRFQNAFSQYKKAVLFPDGQAVGEKIFKTAG.....
G1Q512_MYOLU/228-273 .................i-SALWQQLEALQGQVRRLQGAFLQYKKVELYPNGRDVGQKVFKTAG.....
G1QER4_MYOLU/58-85 ............qteksk------------------------GWKMELFLHGQSVGQKVFKTA-s....
D3YTT8_MOUSE/38-82 ................qv---LKERLGPKETRVRILRSRMRMSKKVHKFLNGRSVGDKIFRTAD.....
G1PYW5_MYOLU/225-270 .................i-SALWQQLEALQGQIRRLQGAFLQYKKVELYPNGRDVGQKVFKTAG.....
CL43_BOVIN/167-212 ..................VDTLRQRMRNLEGEVQRLQNIVTQYRKAVLFPDGQAVGEKIFKTAG.....
F6RQA8_MONDO/228-261 ...slrrcrvswiqiqle---------------------------VDLFPNGQAHGKKIYKTTG.....
Q9XSP4_PIG/1-16 ..................------------------------------FPDGRSVGEKIFKTGG.....
H0VA63_CAVPO/224-269 ..................ITALKQQVEDLRGQLQSLQAAFSRYKKAELFPNGQSVGDKIFKTVG.....
F6ZNR8_ORNAN/175-220 ..................VNTLKQQLTALQEQVKILQAIVSKFKKVELFPGGKEVGEKIFKTNN.....
E2R8I4_CANFA/107-152 ..................ITALRQQVEALQQQVQNLQNALSQYRKVDLFPDGRGIGKKIFKAAG.....
CL46_BOVIN/218-263 ..................VNALKQRVTILEGQLQRLQNAFSRYKKAVLFPDGQAVGKKIFKTAG.....
G3VKV6_SARHA/226-271 ..................INALKQQVLALQEQMKILQTSFSKYQKAELFPSGRAVGVNIFKTSG.....
E2QWQ4_CANFA/235-273 ....evalflsgqpifld---------------------FSPIRHVDLFPDGRGIGKKIFKAAG.....
SFTPD_HUMAN/224-269 ..................VASLRQQVEALQGQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAG.....
#=GR SFTPD_HUMAN/224-269 SS ..................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETTEEEEEEE.....
E2QWR0_CANFA/224-269 ..................ITALRQQVEALQQQVQNLQNALSQYRKVDLFPDGRGIGKKIFKAAG.....
B7FEK7_BOVIN/167-212 ..................VDTLRQRMRNLEGEVQRLQNIVTQYRKAVLFPDGQAVGEKIFKTAG.....
G1Q3F7_MYOLU/104-140 ...............pgk------------EQVEHLQRAYLQCKKVEIFPNGRGVGQKVFKSAG.....
G1NV76_MYOLU/228-273 ..................ITALRQQVEALQEQVGRLLGAFLQYKKMELFLHGQSVGQKVFKTA-r....
E1BEZ9_BOVIN/218-263 ..................VNALKQRVTILEGQLQRLQNAFSRYKKAVLFPDGQAVGKKIFKTAG.....
H9G9K9_ANOCA/222-267 ..................VNLMKNQVTALEGQLKALQASFTKYQKVATFPGGRIVGNKVFITSG.....
G7PEY0_MACFA/224-269 ..................VASLRQQVEALQKQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAG.....
F6QP69_CALJA/71-102 ..................VTSLRQQVEALQGQVQHLQAAFSQYKK-------------------ggarp
G1P0I8_MYOLU/224-262 ...............nad---LRQQVEAL-------QGAFLQYKKVELFPNGRGVGQKVFKAAG.....
G3CH39_XENLA/122-167 ..................IETLRAKVNSMEAELRNLKLNVAIQKKALVFSKGASVGEKLYATRG.....
H2NAF9_PONAB/224-269 ..................VASLRQQVEALQGQVQHLQAAFSQHKKVELFPNGQSVGEKIFKTAG.....
SFTPD_RAT/223-268 ..................SAALRQQMEALNGKLQRLEAAFSRYKKAALFPDGQSVGDKIFRAAN.....
D2HJF9_AILME/224-269 ..................IAALRQQVEALHGQVQHLQNAFSQHRKVELFPNGRAVGEKIFKTGG.....
F6ZNY9_ORNAN/224-269 ..................VNTLKQQLTALQEQVKILQAIVSKFKKVELFPGGKEVGEKIFKTNN.....
E7DSS8_BUBBU/8-53 ..................VNALKQRVTILDGHLRRFQNAFSQYKKAVLFPDGQAVGEKIFKTTG.....
F6RQ99_MONDO/232-264 ...........lendqns--------------------IKSQTIKVDLFPNGQAHGKKIYKTTG.....
F7DJE3_HORSE/224-269 ..................VTALRRQVEALQRQVQQLQDAFSQYKKAELFPNGRRVGEKIFKTGG.....
F1PYK1_CANFA/108-153 ..................ITALRQQVEALQQQVQNLQNALSQYRKVDLFPDGRGIGKKIFKAAG.....
F1MFY6_BOVIN/167-212 ..................VDTLRQRMRNLEGEVQRLQNIVTQYRKAVLFPDGQAVGEKIFKTAG.....
G3SPS7_LOXAF/224-269 ..................VAALRQQVEALQGQVRHLQSSFLQYKKVELFPNGRGVSEKIFKTGG.....
G7N227_MACMU/224-269 ..................VASLRQQVEALQKQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAG.....
G9KNG5_MUSPF/74-119 ..................ITALRQQVEALRGQVQHLQNTFSQYRKVDLFPNGRAVGEKIFKTGG.....
H9KY39_CALJA/1-16 ..................------------------------------FPNGQSVGEKIFKTAG.....
F1P564_CHICK/88-133 ................td--DLHRQITDLEAKIRVLEDDLSRYKKALSLKDFVNVGKKMFVS--tg...
I0CF13_SHEEP/8-53 ..................VNALKQQVTILEGHLRRFQNAFSQYKNAVLFPDGQAVGEKIFKTAG.....
G3HQ12_CRIGR/184-229 ..................SASLKQQIEALKGQLQHLEAAFSRYKKAALFPDGRSVGDKIFRTGG.....
G3R0R1_GORGO/224-269 ..................VASLRQQVEALQGQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAG.....
G3FGP5_CHICK/104-149 ................td--DLHRQITDLEAKIRVLEDDLSRYKKALSLKDVVNVGKKMFVS--tg...
F6ZP03_ORNAN/228-273 ..................VNTLKQQLTALQEQVKILQAIVSKFKKVELFPGGKEVGEKIFKTNN.....
G1P819_MYOLU/226-271 ..................IAALRRQVEALQGQVGRLQGAFLQCKKVELFPNGRDVGQKVFKSAG.....
G1PZF8_MYOLU/224-269 ..................IAALRRQVEALQWQVGHLQRAFLQYKKVELFPSGRDVGQKVFKSAG.....
H9KWY4_CALJA/234-279 ..................VTSVKQQVEALLGQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAG.....
G1TK26_RABIT/157-202 ..................ITTLRQQVEALQGRLQQLQATLSIYRKVLVFPNGQDVGEKIFKAAG.....
Q98TA4_CHICK/104-149 ................td--DLHRQITDLEAKIRVLEDDLSRYKKALSLKDVVNVGKKMFVS--tg...
F7BZJ1_MONDO/170-215 ..................INSLKQQVATLQEQVKILQTSFSKYKNAELFPSGRAVGETIFKTS-s....
G5C4H5_HETGA/224-269 ..................IAALKQQVEALRRQLQTLQASFSHCKKAELFPNGQSVGDKIFKTVG.....
G1QC23_MYOLU/109-145 .................n-AALRRQVEALQGQVGSLQGAFLH---------GRDVGQKVFKSAG.....
F6T2L3_MONDO/63-104 .................m-NSLKQQVATLQEQVKILQTSFTKYKNG----NGRAVGETIFKTS-s....
G1Q5Q5_MYOLU/224-269 ..................IAALRQQVEALQGQVGRLQGAFLQYKKVELFPNGRGVGQKVFKSAG.....
F7CIY3_MONDO/216-261 ................pn--ELEQQVPELHKQVENLQKRLSKQQKVDLFPNGQAHGKKIYKTTG.....
A9UMI8_XENTR/101-146 ..................VEALKLQTSLLVGRLNALQSSLETPKKAFLFASGISIGSKYYVT--nr...
SFTPD_MOUSE/223-268 ..................SAALRQQMEALKGKLQRLEVAFSHYQKAALFPDGRSVGDKIFRTAD.....
H9KYA7_CALJA/1-16 ..................------------------------------FPNGQSVGEKIFKTAG.....
F1NKG3_CHICK/104-149 ................td--DLHRQITDLEAKIRVLEDDLSRYKKALSLKDFVNVGKKMFVS--tg...
G1QAB4_MYOLU/85-122 alsgalkasmhetrrkdg--------------------------KLELFPSGRDVGQKVFKSAG.....
G1RIC2_NOMLE/224-269 ..................VASLRQQVEALQVQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAG.....
Q9XSQ2_SHEEP/1-16 ..................------------------------------FPDGRSVGKKIFKTAG.....
H0WYK2_OTOGA/224-269 ..................VAALRQQVEALQGQMQNLQATLSQYKKADLFPNGRSVGEKIFKI--vn...
SFTPD_MACMU/224-269 ..................VASLRQQVEALQKQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAG.....
E7DSS9_BOSTR/8-53 ..................VNALKQRVTILDGHLRRFQNAFSQYKKAVLFPDGQAVGEKIFKTTG.....
SFTPD_BOVIN/218-263 ..................VNALRQRVGILEGQLQRLQNAFSQYKKAMLFPNGRSVGEKIFKTEG.....
B7ZTQ7_XENTR/101-146 ..................VEALKFQTSLLVGRLNALQSSLETPKKAFLFASGISIGSKYYVT--nr...
#=GC SS_cons ..................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETTEEEEEEE.....
#=GC seq_cons ..................lsuL+QQlpsLptplppLQsuhSpYKKstLFPsGpuVGcKIFKTuG.....
//
