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Database: Pfam
Entry: Synaptonemal_3
LinkDB: Synaptonemal_3
Original site: Synaptonemal_3 
#=GF ID   Synaptonemal_3
#=GF AC   PF15191.2
#=GF DE   Synaptonemal complex central element protein 3
#=GF AU   Eberhardt RY, Coggill P, Hetherington K
#=GF SE   Jackhmmer:A1L190
#=GF GA   27.00 27.00;
#=GF TC   66.70 66.40;
#=GF NC   24.40 23.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Synaptonemal_complex
#=GF DR   INTERPRO; IPR028145;
#=GF SQ   41
#=GS H2RBX9_PANTR/1-85       AC H2RBX9.1
#=GS E7D6R1_MOUSE/1-85       AC E7D6R1.1
#=GS G3IM77_CRIGR/1-85       AC G3IM77.1
#=GS S9XNJ1_9CETA/6-90       AC S9XNJ1.1
#=GS R4GBT4_ANOCA/1-85       AC R4GBT4.1
#=GS W5QFA2_SHEEP/1-84       AC W5QFA2.1
#=GS SYCE3_MOUSE/1-85        AC B5KM66.1
#=GS SYCE3_MOUSE/1-85        DR PDB; 4R3Q A; 13-85;
#=GS SYCE3_MOUSE/1-85        DR PDB; 4R3Q B; 12-85;
#=GS B3DHF5_DANRE/1-91       AC B3DHF5.1
#=GS R7VS22_COLLI/1-85       AC R7VS22.1
#=GS L9JFD6_TUPCH/1-85       AC L9JFD6.1
#=GS G1U293_RABIT/1-85       AC G1U293.1
#=GS H0XKE1_OTOGA/1-85       AC H0XKE1.1
#=GS Q4RNB1_TETNG/1-70       AC Q4RNB1.1
#=GS U6CRL4_NEOVI/1-85       AC U6CRL4.1
#=GS H1A4T8_TAEGU/1-83       AC H1A4T8.1
#=GS W5KM33_ASTMX/1-92       AC W5KM33.1
#=GS G3MY06_BOVIN/1-85       AC G3MY06.1
#=GS D3ZDD6_RAT/1-85         AC D3ZDD6.1
#=GS G5E7G0_LOXAF/1-73       AC G5E7G0.1
#=GS G7PG76_MACFA/1-85       AC G7PG76.1
#=GS J9P675_CANFA/1-85       AC J9P675.1
#=GS F7H7Y4_CALJA/1-85       AC F7H7Y4.1
#=GS R0K9C5_ANAPL/1-85       AC R0K9C5.1
#=GS S7MX27_MYOBR/1-85       AC S7MX27.1
#=GS M7AQF4_CHEMY/1-85       AC M7AQF4.1
#=GS SYCE3_HUMAN/1-85        AC A1L190.1
#=GS V9LD99_CALMI/7-88       AC V9LD99.1
#=GS G5B2G1_HETGA/1-83       AC G5B2G1.1
#=GS I3NHA5_SPETR/1-85       AC I3NHA5.1
#=GS F6PQ54_HORSE/1-84       AC F6PQ54.1
#=GS H3A163_LATCH/1-85       AC H3A163.1
#=GS G3QK37_GORGO/1-85       AC G3QK37.1
#=GS H9ES48_MACMU/1-85       AC H9ES48.1
#=GS G1PYV3_MYOLU/1-85       AC G1PYV3.1
#=GS L8I3N7_9CETA/1-85       AC L8I3N7.1
#=GS D2H6D0_AILME/1-85       AC D2H6D0.1
#=GS G7N4F5_MACMU/1-85       AC G7N4F5.1
#=GS L5K7L9_PTEAL/1129-1211  AC L5K7L9.1
#=GS L5LG90_MYODS/1-85       AC L5LG90.1
#=GS F1RXU0_PIG/1-85         AC F1RXU0.2
#=GS M3WXL6_FELCA/1-85       AC M3WXL6.1
H2RBX9_PANTR/1-85                  ....MDDADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFVNCK-------EEMEKNWQELLHETK...........
E7D6R1_MOUSE/1-85                  ....MADSDPGERSYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQELLTETK...........
G3IM77_CRIGR/1-85                  ....MADSDPGERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQELLTETK...........
S9XNJ1_9CETA/6-90                  ....MADSDPGERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQELLSETK...........
R4GBT4_ANOCA/1-85                  ....MAKCETYERNYDNIVKQLEDLNRDLEKLLEDMEKLSVQATWMAYDMVVMRANPELANSMRRLEDAFLTCK-------EEMERNWQEMLKETK...........
W5QFA2_SHEEP/1-84                  ....MADPGPGERSYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPALAEAMRRAGGGLPR-K-------EEMEKKWQELLSE--ar.........
SYCE3_MOUSE/1-85                   ....MADSDPGERSYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQELLTETK...........
#=GR SYCE3_MOUSE/1-85        SS    ....XXXXXXXXXXX-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-XXXXXHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT-...........
B3DHF5_DANRE/1-91                  ....MSGGLSDVQLCEDFSSESLQLNQHLEKMTEQMEDVSVKLSCMTYDMVVLRTSPDLAESFKSLENEFQKCKAVLCGLTDGQEVKCHP--ADE-eq.........
R7VS22_COLLI/1-85                  ....MAESEAQAGNYDNMVKMVEDLSKDLEKLLEEIEKLTVQATWMAYDMVVMRTNPHLSNSMRRLEDAFLSCK-------EEMEKKWQEVLSE--yk.........
L9JFD6_TUPCH/1-85                  ....MADSDSGGKNYDSMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCK-------EEMEKKWQELLAETK...........
G1U293_RABIT/1-85                  ....MADSDPGERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQEMLRETK...........
H0XKE1_OTOGA/1-85                  ....MADSDSGERSYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVIRTNPMLAESMRRLEDAFLNCK-------EEMEKNWQELLNETK...........
Q4RNB1_TETNG/1-70                  ...m------------------SELTEDLERMTEHTEKMSLQLTWMAHDLVVLRASPELASSMRKLEDAYRGCRAAVCGLPEPDK-----------spaapg.....
U6CRL4_NEOVI/1-85                  ....MADSDPGERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPSLAESMRRLEDAFLNCK-------EEMEKNWQELLTETK...........
H1A4T8_TAEGU/1-83                  ....MDESESQKENYYNEGKMVENFNMDMEELLDEMEKLTVRAAWMAYDYVAIQTNPGPYNAMQHLEDAFLMCK-------EQMEKKWQEVL----le.........
W5KM33_ASTMX/1-92                  ....MVDGSSSGEQHADFGRESLQLNKDLEKMTEQMENVSVHLTWMAYDMVVLRTNPQLAKSLRRLEDEYLKCKAVICSSADKDNAAVHSVTGDQE...........
G3MY06_BOVIN/1-85                  ....MADPDPGERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPALAESMRRLEDAFLNCK-------EEMEKKWQELLSEA-k..........
D3ZDD6_RAT/1-85                    ....MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQELLTETK...........
G5E7G0_LOXAF/1-73                  ....MADSDPGDRNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVIRTNPTLADSMRRLEDAFFNCK----------------------eem........
G7PG76_MACFA/1-85                  ....MADADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFVNCK-------EEMEKNWQELLHETK...........
J9P675_CANFA/1-85                  ....MADSEPGERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQELLNETK...........
F7H7Y4_CALJA/1-85                  ....MADADAEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPMLAESMRRLEDAFLNCK-------QEMEKNWQELLHETK...........
R0K9C5_ANAPL/1-85                  ....MARSEPQDRNYDNVVKMVEDLNRDLEKLVEEMEKMTVQATWMAYDMVVMRTNPDLTNSMRRLEDAFLNCK-------KEMEKKWQEVLMES-k..........
S7MX27_MYOBR/1-85                  ....MAESDPGERNCDNMLKMLSDLNKDLEKILEEMEKISVQATWMAYDMVVIRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQELLSETK...........
M7AQF4_CHEMY/1-85                  ....MAKSEPRERNYDNMVKMLEDLNRDLEKLLEEMEKLSVQATWMAYDMVVMRTNPDLANSMRRLEDAFLNCK-------EEMEKNWQEMLKETK...........
SYCE3_HUMAN/1-85                   ....MDDADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFVNCK-------EEMEKNWQELLHETK...........
V9LD99_CALMI/7-88                  qmtk------AQEEHEDIVKILDDMCLQLKKMLNDMEIQSVQATCMSYDMVLIRTDPCVVESLSQLNNAYLHCKE-------TV------------ekdcyeiltkv
G5B2G1_HETGA/1-83                  ...m---ADPGERNYDNMLRMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTDPALAEFMHRLEDAFLNCK-------EEMEKSRQELLSETK...........
I3NHA5_SPETR/1-85                  ....MADSDPGERNYDNMLRMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQELLSETK...........
F6PQ54_HORSE/1-84                  ....MADSDPGERNYDNMLKMLSDLN-DLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQELLSET-t..........
H3A163_LATCH/1-85                  ...m-AESELCEKKHDNILKMLCDLNRDLEKMLEDIEKISVQTTWMAYDMVVMRTNPALTDSMKKLEEAFLNCK-------EEVERNWQEMLSETK...........
G3QK37_GORGO/1-85                  ....MDDADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFVNCK-------EEMEKNWQELLHETK...........
H9ES48_MACMU/1-85                  ....MADADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFVNCK-------EEMEKNWQELLHETK...........
G1PYV3_MYOLU/1-85                  ....MAESDPGERNCDNMLKMLSDLNKDLEKILEEMEKISVQATWMAYDMVVIRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQELLSETK...........
L8I3N7_9CETA/1-85                  ....MADPDPGERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPALAESMRRLEDAFLNCK-------EEMEKKWQELLSEA-k..........
D2H6D0_AILME/1-85                  ....MADSDPGERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVIRTNPGLAESMRRLEDAFLNCK-------EEMEKNWQELLNETK...........
G7N4F5_MACMU/1-85                  ....MADADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFVNCK-------EEMEKNWQELLHETK...........
L5K7L9_PTEAL/1129-1211             ....--DSDPGERNYDNILKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAEAMRRLEDAFLNCK-------EEMEKNWQELLRET-a..........
L5LG90_MYODS/1-85                  ....MAESDPGERNCDNMLKMLSDLNKDLEKILEEMEKISVQATWMAYDMVVIRTNPALAESMRRLEDAFLNCK-------EEMEKNWQELLSETK...........
F1RXU0_PIG/1-85                    ....MAESDPGERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWLAYDMVVTRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQELLSETK...........
M3WXL6_FELCA/1-85                  ....MADSDPGERNYDDMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCK-------EEMEKNWQELLTETK...........
#=GC SS_cons                       ....XXXXXXXXXXX-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-XXXXXHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT-...........
#=GC seq_cons                      ....MADSDPuERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPsLAESMRRLEDAFLNCK.......EEMEKNWQELLsETK...........
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