GenomeNet

Database: Pfam
Entry: T4_tail_cap
LinkDB: T4_tail_cap
Original site: T4_tail_cap 
#=GF ID   T4_tail_cap
#=GF AC   PF11091.3
#=GF DE   Tail-tube assembly protein
#=GF AU   Pollington J, Finn RD
#=GF SE   PRODOM
#=GF GA   20.20 20.20;
#=GF TC   20.30 20.50;
#=GF NC   19.80 19.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   2139268
#=GF RT   Expression and regulation of genes coding for three
#=GF RT   bacteriophage T4 tail tube-associated proteins. 
#=GF RA   Ishimoto LK, Elisha J, Eiserling FA; 
#=GF RL   Virology. 1990;175:586-590.
#=GF DR   INTERPRO; IPR024389;
#=GF CC   This tail tube protein is also referred to as Gp48. It is
#=GF CC   required for the assembly and length regulation of the tail tube
#=GF CC   of bacteriophage T4 [1].
#=GF SQ   48
#=GS H8ZMA9_9CAUD/109-310  AC H8ZMA9.1
#=GS Q0QZL4_BPSYS/40-299   AC Q0QZL4.1
#=GS E5DHS8_9CAUD/3-343    AC E5DHS8.1
#=GS G1FHB5_9CAUD/3-358    AC G1FHB5.1
#=GS D4Z9Z4_BPAR1/3-358    AC D4Z9Z4.1
#=GS F2VXP9_9CAUD/3-358    AC F2VXP9.1
#=GS A7XFE6_9CAUD/2-346    AC A7XFE6.1
#=GS D5JFD7_9CAUD/2-351    AC D5JFD7.1
#=GS G0X5W4_9CAUD/3-358    AC G0X5W4.1
#=GS E5DQC0_9CAUD/11-330   AC E5DQC0.1
#=GS E5FIP4_9CAUD/2-362    AC E5FIP4.1
#=GS E3SF11_9CAUD/2-356    AC E3SF11.1
#=GS Q7Y436_9CAUD/2-346    AC Q7Y436.1
#=GS H6BHX4_9VIRU/48-251   AC H6BHX4.1
#=GS C4MZ05_9CAUD/2-346    AC C4MZ05.1
#=GS D9ICF7_9CAUD/2-358    AC D9ICF7.1
#=GS E5EPY6_9CAUD/1-353    AC E5EPY6.1
#=GS Q56BU3_9CAUD/2-355    AC Q56BU3.1
#=GS C4MZT5_9CAUD/2-356    AC C4MZT5.1
#=GS E5DRU7_9CAUD/20-328   AC E5DRU7.1
#=GS VG48_BPT4/3-358       AC P13339.3
#=GS Q6WHH2_BPKV4/12-342   AC Q6WHH2.1
#=GS C3V1Q3_9CAUD/3-358    AC C3V1Q3.1
#=GS D9I6D0_9CAUD/2-350    AC D9I6D0.1
#=GS G3MV11_9CAUD/2-356    AC G3MV11.1
#=GS E3SP11_9CAUD/4-215    AC E3SP11.1
#=GS E1A1D0_9CAUD/2-337    AC E1A1D0.1
#=GS D5GVH8_9CAUD/20-237   AC D5GVH8.1
#=GS D9IEN0_BPT4/3-358     AC D9IEN0.1
#=GS E5E4H9_9CAUD/2-357    AC E5E4H9.1
#=GS Q5QBV5_9CAUD/2-356    AC Q5QBV5.1
#=GS Q19CJ1_9CAUD/2-337    AC Q19CJ1.1
#=GS H6SUH3_9VIRU/16-237   AC H6SUH3.1
#=GS Q76YN8_9CAUD/12-331   AC Q76YN8.1
#=GS Q06ED5_BPR32/3-358    AC Q06ED5.1
#=GS C3V2H9_BPR51/3-358    AC C3V2H9.1
#=GS D7RMJ8_9CAUD/3-357    AC D7RMJ8.1
#=GS D5GW26_9CAUD/26-237   AC D5GW26.1
#=GS Q7Y4U4_BPR69/3-363    AC Q7Y4U4.1
#=GS Q6U9B8_9CAUD/2-337    AC Q6U9B8.1
#=GS E1A284_9CAUD/7-328    AC E1A284.1
#=GS H6T4P8_9VIRU/48-251   AC H6T4P8.1
#=GS Q56EH9_9CAUD/2-337    AC Q56EH9.1
#=GS H6BII5_9VIRU/48-251   AC H6BII5.1
#=GS C9DFX9_9CAUD/126-187  AC C9DFX9.1
#=GS E5EYX0_9CAUD/2-351    AC E5EYX0.1
#=GS G8EXX3_9CAUD/22-330   AC G8EXX3.1
#=GS Q58LT7_BPPRS/71-321   AC Q58LT7.2
H8ZMA9_9CAUD/109-310             ............................................................gfsseqaasnlqnaaagllpefa----.--------------------------..---------------------..------------------------....-------...-----..----.--------------...........--------.-...---------------------.....---------YNKGA.GMISS.................LASS...--FGVGG.......NVS.......G.NNLQAl......................tAGRIMNPFTEQVFNGMQFRSHQFNFKMFAKNQSEARQILEIVKYLK.....VGTLPMLGDADldFINN..LKSTFNKDENES------..---.---VSG...............ASS---.GTATNLqgKFLKVP...DRY...LLEFVRldpNTNTV........kKLPHYKF...HACVCNNVSVNYTPDGQYVSFK...DA-----...-...-----------------iadls.................................
Q0QZL4_BPSYS/40-299              ..............................................................qykdgqygglnlpdnatqvql----.--------------------------..---------------------..------------------------....-------...-----..----.--------------...........-----NKT.I...AYVSMP--QNLTAAYMPNYAQ.....VGQGILGIAGAKVA.GAVEAglsgdqlndlltetlqsTAGA...AIPELLY.......NKG.......A.GVLQNlnnmgslggs....vsgnnlmalgTGKIMNPYTEQIFQGISFRNHSFSQKMLARNKKEAREIVKLIEYFK.....TGALPILEGGK..YKKK..KRGNNSSGGNNIFT----..---.--SKKT...............VAGR--.------..-FLKIP...DYFlleFVRVNP...ETDTI........aPIPHYKF...QPCVCTGVNVNYTPDGQYVSFK...DA-----...-...-----------------iad...................................
E5DHS8_9CAUD/3-343               .......................................................................irateildkafg----.----------S--GEKTSAGQSSISS..TRRSTVTAQYPAERSAGNDAAgdLRVHDLYKNGLLFTAYDMSSRTTP....DLRSMRQ...-----..SQLS.KSASSILNSLGIKN...........NGQVDKSP.I...ANILLPRSKSDVESISHKFND.....VGDSLMTRGNNSAT.GVLSN.................VAST...AVFGALD.......SIT.......Q.GLMAD........................NNEQIYNTARSMYAGADNRTKVFTWDLTPRSVADLVSIIQIYEYFN.....YFSYGETGNST..YAKE..LKGQLDEWYKTTLLSPLT..PDG.ADLNNT...............MFENIT.SFLSNV..IVVTNP...TVW...FIRNFG...KTSKF.........DGRAEVF...GPCQIQSIRFDKTPNGQFNGLA...IAPNMPS...T...FTLEITFREILTLNRAS......................................
G1FHB5_9CAUD/3-358               .................................................................................iv--KE.I---TADLIKKS-GEKISAGQSTKSE..VATKTYTAQFPTGRASGNDTTgdFQVTDLYKNGLLFTAYNMSSRDSG....SLRSMRSn.ySSSSS..SILS.TARNTISSTVSKLSngli...snnnSGTISKAP.V...ANILLPRSKSDVDTSSHRFND.....VQESLISRGGGTAT.GVLSN.................IAST...AVFGALE.......SIT.......Q.GIMAD........................NNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFN.....YFSYGETGKSQ..YAAE..IKGYLDDWYRSTLIEPLS..PED.AAKNKT...............LFEKMT.SSLTNV..LVVSNP...TIW...MVKNFG...ATSKF.........DGKTEIF...GPCQIQSIRFDKTPNGNFNGLA...IAPNLPS...T...FTLEITMREIITLNRAS......................................
D4Z9Z4_BPAR1/3-358               .................................................................................iv--KE.I---TADLIKKS-GETISAGQSTKSE..VGTKTYTAQFPTGRASGNDTTgdFQVTDLYKNGLLFTAYNMSSRDSG....SLRTMRSn.ySSSSS..SILR.TARNTISNTVSKLSngli...sdnnSGTISKVP.V...ANILLPRSKSDVDTSSHRFND.....VQDSLITKGGGTAT.GVLSN.................MAST...AVFGALE.......SIT.......Q.GIMAD........................NNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFN.....YFSYGETGKSQ..YAAE..IKGYLDEWYRSTFIEPLT..PED.AIKNKT...............LFEKMT.SSLTNV..LVVSNP...TIW...MVKNFG...ATSKF.........DGKTEVF...GPCQIQSIRFDKTPNGNFNGLA...IAPNLPS...S...FTLEITMREIITLNRAS......................................
F2VXP9_9CAUD/3-358               .................................................................................iv--KE.I---TADLIKKS-GEKISAGQSTKSE..VATKTYTAQFPTGRASGNDTTgdFQVTDLYKNGLLFTAYNMSSRDSG....SLRSMRSn.ySSSSS..SILS.TARNTISSTVSKLSngli...snnnSGTISKAP.V...ANILLPRSKSDVDTSSHRFND.....VQESLISRGGGTAT.GVLSN.................IAST...AVFGALE.......SIT.......Q.GIMAD........................NNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFN.....YFSYGETGKSQ..YAAE..IKGYLDDWYRSTLIEPLS..PED.AAKNKT...............LFEKMT.SSLTNV..LVVSNP...TIW...MVKNFG...ATSKF.........DGKTEIF...GPCQIQSIRFDKTPNGNFNGLA...IAPNLPS...T...FTLEITMREIITLNRAS......................................
A7XFE6_9CAUD/2-346               ...................................................................................KISV.IN-DAVDSFKA--GVKTSAGFTSKNK..--GKTLTAQFPAERASGNDAS.gYYINDLYNNGLLFTAYDYTSRTTG....SLRDFRK...---KK..NVAS.GFGGSV--NIAGFDlnl.....ggrNAAFDREA.I...ANILLPRSQSDVDAASHKFND.....VGESVISRGGGTLG.GALSN.................MAST...AVFGGIE.......SIT.......G.GYLAD........................HGEQIYNTARSMYAGADARTKNYVWHLTPRSIEDLRNILIIYETFL.....ELSYGSSGISS..TAKE..LKAEVDAWYKNTLLRKST..PEE.AKRNDT...............LFEGIT.DFLSNA..ITVSNP...TIW...MISNFG...KRTSF.........EGRSDAF...GPAQISSVRLDKSPDGKFNGLA...ISPNLPS...T...FVLEVSFREILTLSRG-t.....................................
D5JFD7_9CAUD/2-351               ...............................................................................kfsi----.-IDDSINTLKNIKNRGIPSGGAAITEsvLKQTIVTAEFPAQRAAGIDNA..YNASSLYNNGLLFTAYDFNGVGSK...dNYRSLRQ..aAQNPK..QILS.SATGNVKYKQVLNS...........-SIGTMEP.V...CQILLPRSLNDNEVNSHRYQD.....ANDSFLTKG-----.--LSR.................VVSN...MVWGAVE.......SIS.......G.GIMAD........................RREALDVGTKAAFQGSDKRTKMYYNTFVIESRNDLLELIKIYYLFT.....VLGYGTTSGGT..-AKE..VAALVKQYYGVLGAKTAN..AIS.PSSNPVtasd.......fdnsLGNDVV.DFISNV..EVIKSP...PVW...FIRDFQ...SGDSL.........RLPHSTF...GPAGITSVRFGRSIDNIVNTLR...ESPNTPI...S...LEVEIQFMELIDMRQDS......................................
G0X5W4_9CAUD/3-358               .................................................................................iv--KE.I---TADLIKKS-GETISAGQSTKSE..VGTKTYTAQFPTGRASGNDTTgdFQVTDLYKNGLLFTAYNMSSRDSG....SLRTMRSn.ySSSSS..SILR.TARNTISNTVSKLSngli...sdnnSGTISKVP.V...ANILLPRSKSDVDTSSHRFND.....VQDSLITKGGGTAT.GVLSN.................MAST...AVFGALE.......SIT.......Q.GIMAD........................NNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFN.....YFSYGETGKSQ..YAAE..IKGYLDEWYRSTFIEPLT..PED.AIKNKT...............LFEKMT.SSLTNV..LVVSNP...TIW...MVKNFG...ATSKF.........DGKTEVF...GPCQIQSIRFDKTPNGNFNGLA...IAPNLPS...S...FTLEITMREIITLNRAS......................................
E5DQC0_9CAUD/11-330              ..................................................................................g-VKT.ISDAAGKFIGNFLSSPA---------..GDAGIQALQYPLAMKGEIER-..------HKNYLCFYCVEAMG----....------Q...GLSNA..DIQK.RSLNSVTGKFNEKT...........------LA.V...IQMYMP---NLNQNVSHEYSDndggfLQDMAMNYAGSAGS.GVIEGakd..........lgnaFMTT...AMQQISV.......NIG.......K.ASQQYns....................qiSGKVLGNRSANMYKNTSLRTQTFLYNFRPKNVAELKEVGQIIRAFL.....IYSSPSNAGVT..SVNQ..MLDKIGGAATSLK-----..---.----TE...............AGN--T.GGTESI..QVLKVP...PLW...YLEERV...NSQSDva....eirYTPKFAM...GPCALSNIRITSTPEQIYNSFA...GTAGDPI...A...IDLELTFTELRPVFREY......................................
E5FIP4_9CAUD/2-362               ...........................................................................kvkeldfd----.--FDIAGLFNG--GSKTSAGQ-SKAA..QTQATIVAQYPAERASGNDSSddMRVNDLYKNGLLFTAYNFSSRTSP....ELRSDRS...SQLTSlkKVSNgASFNPVKSLT-SFAksklt.gsgstGKSFDSNA.V...ANILLPRSKSDVESVSHRFND.....VGESLITKGGGSAT.GILSN.................IAST...AVFGALE.......SVT.......N.GVMAD........................HGEQIYTTARSMYAGPDNRTKVYTWEMTPRSAQDLIQIVKIYEIFN.....YYSYGETGKSS..FASE..LKDKIDTWYKSTFPSKRK..AID.NFDGKL...............LGEEIT.SFLTNV..LVVSNP...TIW...YIRNFG...DTSSY.........DGRGELF...GPCQIQSIRFDKSPDGHFGGLA...IAPNLPS...T...FVLEITFREIITLNRG-s.....................................
E3SF11_9CAUD/2-356               ...................................................................................KVKE.LD--IAGLFNG--GSKTSAGQ-SKAA..QTQATIVAQYPAERASGNDSSddMRVNDLYKNGLLFTAYNFSSRTSP....ELRSDRS...SQLTSlkKVSNgASFNPVKSLT-SFAksklt.gagstGKSFDSNA.V...ANILLPRSKSDVESVSHRFND.....VGESLITKGGGSAT.GILSN.................IAST...AVFGALE.......SVT.......N.GVMAD........................HGEQIYTTARSMYAGPDNRTKVYTWEMTPRSAQDLIQIVKIYEIFN.....YYSYGETGKSS..FASE..LKEKIDTWYKSTFKKEAI..--D.NFDGKL...............LGEEIT.SFLTNV..LVVSNP...TIW...YIRNFG...DTSSY.........DGRGELF...GPCQIQSIRFDKSPDGHFGGLA...IAPNLPS...T...FVLEITFREIITLNRG-s.....................................
Q7Y436_9CAUD/2-346               ...................................................................................KISV.IN-DAVDSFKA--GVKTSAGFTSKNK..--GKTLTAQFPAERASGNDAS.gYYINDLYNNGLLFTAYDYTSRTTG....SLRDFRK...---KK..NVAS.GFGGSV--NIAGFDlnl.....ggrNAAFDREA.I...ANILLPRSQSDVDAASHKFND.....VGESVISRGGGTLG.GALSN.................MAST...AVFGGIE.......SIT.......G.GYLAD........................HGEQIYNTARSMYAGADARTKNYVWHLTPRSIEDLRNILIIYETFL.....ELSYGSSGISS..TAKE..LKAEVDAWYKNTLLRKST..PEE.AKRNDT...............LFEGIT.DFLSNV..ITVSNP...TIW...MISNFG...KRTSF.........EGRSDAF...GPAQISSVRLDKSPDGKFNGLA...ISPNLPS...T...FVLEVTFREILTLSRG-t.....................................
H6BHX4_9VIRU/48-251              .................................................yyglnlpgntikkklhpnrvylalpnsiqtqyqp----.--------------------------..---------------------..------------------------....-------...-----..----.--------------...........--------.-...-----------------QYNQv...dLGVMGIAAAEMSAS.GNLDN.................IVNTiqsSAQAALP.......EFA.......A.SAIAStanrfgqmlglqgnldanslqaltKGRVFNPFTEQIFKNMAFRTHNFSFKMFIRNPQESREVYEIIRYIK.....EGAVPSIGGTD..QAE-..------------------..---.------...............------.------..------...---...------...-----.........-------...----------------------...-------...-...-----------------qdqltkdlnssgfgqlatsttgfktasssrffevpdkf
C4MZ05_9CAUD/2-346               ...................................................................................KISV.IN-DAVDSFKA--GVKTSAGFTSKNK..--GKTLTAQFPAERASGNDAS.gYYINDLYNNGLLFTAYDYTSRTTG....SLRDFRK...---KK..NVAS.GFGGSV--NIAGFDlnl.....ggrNAAFDREA.I...ANILLPRSQSDVDAASHKFND.....VGESVISRGGGTLG.GALSN.................MAST...AVFGGIE.......SIT.......G.GYLAD........................HGEQIYNTARSMYAGADARTKNYVWHLTPRSIEDLRNILIIYETFL.....ELSYGSSGISS..TAKE..LKAEVDAWYKNTLLSKST..PAE.AKRNDT...............LFEGIT.DFLSNV..ITVSNP...TIW...MISNFG...KRTSF.........EGRSDAF...GPAQISSVRLDKSPDGKFNGLA...ISPNLPS...T...FVLEVSFREILTLSRG-t.....................................
D9ICF7_9CAUD/2-358               ...................................................................................KIKV.LQ-DTVQSFAEIKNAGIPSGGATTTKnaLTQPIVTAEFPSQRAAGIDNA..YNASSLYNNGLLFTAYEFTGGFAPgskdNYRSLRQ..aAQNAQ..QILS.ANTGNVRYKQVLNT...........RTMGTLNP.I...CQILLPRSLNDNEVNSHRYQD.....ATDSIVAKG-----.--PSR.................VVSN...VIWGVIE.......SAS.......G.GILAD........................RREAVDVGTKAAFQGSDKRTKMYYNTFVIESRYDLLELIKIYYLFT.....VLGYGTTSGGT..AA-E..IAELAKQTINKS----ST..TGA.KLINNAvagngptptvsngsiISDQMV.DFVINI..EVIKSP...PVW...FIRDFQ...TGDSL.........RFPHSTF...GPAGITSVRFGRTMDNIVNTLR...ESPNTPI...S...VEIEIQFMELIDMRQDS......................................
E5EPY6_9CAUD/1-353               ...............................................................................mqie----.---EITDLVSKA-GSDISAGQSMRSQ.eSETKILTAQYPAERSASVANTadVGVGQSYSNGLLFTAFEYKSRTTN....DLRSMRT...KAQNA..AKVL.RSSKSVTKAIQAVTgg......npnDPNTIKNP.V...ANILMPRSKTDTDVTGHKFND.....VGESLISRGGGTAT.GILSN.................VAST...AVFGTIE.......SVT.......K.GAMAD........................HGEQIYNTSRSMYAGAENRVKTYTWELTPRTYDDLTQIVKIYEIFN.....YLSYGMTGKSA..FAKG..VKDEIDKWYRKTFINPLN..EATgSNVQST...............TMESVT.SFLSNV..IVVSNP...TVW...TIQNFG...TASKF.........DGLADVF...GPAQISNIRFDKAPDGQFNGLA...AAPNMPS...S...FVLEVTFREILTLNRA-t.....................................
Q56BU3_9CAUD/2-355               ...................................................................................KIKV.LQ-DTVQSFAEIKNAGIPSGGATTTKnaLSQPIVTAEFPSQRAAGIDNA..YNASSLYNNGLLFTAYDFTGGLAPgskdNYRSLRQ..aAQNAK..QILS.ANTGNVRYKQVLNT...........RTMGTLNP.I...CQILLPRSLNDNEVNSHRYQD.....ATDSIVAKG-----.--LSR.................AVSN...VIWGAVE.......SVS.......G.GILAD........................RREAIDIGTKAAFQGSDKRTKMYYNTFVIESRYDLLELIKIYYLFT.....VLGYGTTSGGT..PA-E..LAGLVKTAYNNTASKVAN..VFA.PSSNQTtasd.......fndsIGDQIV.DFVSNV..EVIKSP...PVW...FIRDFQ...TGDSL.........RFPHSTF...GPAGITSVRFGRTMDNIVNTLR...ESPNTPI...S...VEIEIQFMELIDMRQDS......................................
C4MZT5_9CAUD/2-356               ...................................................................................KVKE.IDIDVASLFKG--GSKTSAGQ-SKAK..PAQTTVTAQYPAERASGNDTStdMVLNDLYKNGLLFTAYNFSSRVSP....DLRNDRS...-SQMT..KKFS.KAAGKLTSNTGGFSavknlfsnnskGVKFDSQA.L...ANILLPRSKSDVDSVTHKFND.....VGESLITKGGGTAT.GILSN.................VAST...AVFGALE.......SVT.......N.GVMAD........................SGEQIYTTARSMYAGPDNRTKVFTWEMTPRNAQDLIQIIKIYEIFN.....YYSYGETGNSA..FAGE..LKEKIDTWYRSTFKKEAI..--D.NFDGKL...............LGEGIT.SFLSNV..IVVSNP...TIW...YIRNFG...NTSSY.........DGREDIF...GPCQIQSIRFDKTPDGHFNGLA...IAPNLPS...T...FSLEVTFREIITLNRG-s.....................................
E5DRU7_9CAUD/20-328              ................................................................gnggvkaegaelilenvdm----.--------------------------..KQKGIAALQYPLTMKGSDNK-..------HASYLVFYAVKPTT----....------G...GLSNN..NINE.RSMNSVKGSFNEET...........------LA.V...IQLYMP---NMNENISHTYDSndggfMQDLLMNYASSGKSnDDLMD.................VAKN...ALSATAT.......TAV.......Q.KLIVEaggltq............rfnsqvTGNILGDRSAQMYKGTGVRQQNFMFQFRPRSMAELKEVGQIIKTFM.....IYSSAENRGAV..SM--..---------KDLG----I..---.-PTDSQ...............LGAG--.AGY---..TSLAVP...PLW...FIEERV...NQEGTnk.....irFTPKFAM...GPAGITNIRINKTPDQLYDTFA...STAADSI...A...IDFEITVSELRPVYRD-y.....................................
VG48_BPT4/3-358                  .................................................................................iv--KE.I---TADLIKKS-GEKISAGQSTKSE..VGTKTYTAQFPTGRASGNDTTedFQVTDLYKNGLLFTAYNMSSRDSG....SLRSMRSn.ySSSSS..SILR.TARNTISSTVSKLSngli...snnnSGTISKSP.I...ANILLPRSKSDVDTSSHRFND.....VQESLISRGGGTAT.GVLSN.................IAST...AVFGALE.......SIT.......Q.GIMAD........................NNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFN.....YFSYGETGKSQ..YAAE..IKGYLDDWYRSTLIEPLS..PED.AAKNKT...............LFEKMT.SSLTNV..LVVSNP...TVW...MVKNFG...ATSKF.........DGKTEIF...GPCQIQSIRFDKTPNGNFNGLA...IAPNLPS...T...FTLEITMREIITLNRAS......................................
Q6WHH2_BPKV4/12-342              ...................................................................................KQSD.TLDRVLSFDGGVESSTTEITQDTDQGrvSTSNIVALTYPPNLGARSG--..------HSNFFIFRAYDLASTTKQ....HYTDMRQ...SFTAS..SKES.KQASEIPSEL----...........------MA.T...MALYAP---NLVEEVSHEYDKtptsvLNDFLAAAATAAGA.DTVSQgve..........agkkAVAT...AAGATLA.......QIK.......R.SFIQSnaag...............qleknSSVVTDNVTVTAYKGTAQRQQTLMYQFHPKSLDELKIVGEVIKTFY.....RLSL-------..---P..VKGQISSDLLDTG-----..---.---NAA...............LGSGFSnGFAKYA..TLLKTP...PVW...MIEEVS...DVDAT........rYTPRFVF...GPAGITSVKLNRTPDQYWRTFR...GTAGDPA...G...IELEVTFTELIPMDRAM......................................
C3V1Q3_9CAUD/3-358               .................................................................................iv--KE.I---TADLIKKS-GEKISAGQSTKSE..VGTKTYTAQFPTGRASGNDTTgdFQVTDLYKNGLLFTAYNMSSRDSG....SLRSMRSn.ySSSSS..SILR.TARNTISSTVSKLSngli...snnnSGTISKAP.I...ANILLPRSKSDVDTSSHRFND.....VQESLISRGGGTAT.GVLSN.................IAST...AVFGALE.......SIT.......Q.GIMAD........................NNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFN.....YFSYGETGKSQ..YAAE..IKGYLDDWYRSTLIEPLS..PED.AAKNKT...............LFEKMT.SSLTNV..LVVSNP...TVW...MVKNFG...ATSKF.........DGKTEIF...GPCQIQSIRFDKTPNGNFNGLA...IAPNLPS...T...FTLEITMREIITLNRAS......................................
D9I6D0_9CAUD/2-350               ................................................................................kye----.---EIVDSIKKA-GTEISAGY-TKQD..TTQQTFSAQYPAERSAGNDAT.kTSNGDLYRNGLLFTAYDYKARATP....DMTRQRQ...--GEL..DKAR.SLYTRISSGLADAGkrss...tqgqDKKIVKDP.V...ANILLPRSKSDSDVVSHKFND.....VQDSLITRGGGTAT.GILSN.................IAST...AVFGTIE.......SVT.......Q.GWMAD........................KGEQIFNASRSMYNGAENRSKVYTWELTPRTLEDLVEIMKIYEIFN.....YYSYGMTGTSA..YAKE..LKAYIDDWYKKTFLNNLT..PEG.SDKSGT...............AMESVT.SFLSNV..ITVSNP...TIW...FVRNFG...KSTKF.........DGRPDVF...GPAQIQSIRFDKAPEGHFKGLA...IAPNMPS...T...FVLEITMREVIALSRG-s.....................................
G3MV11_9CAUD/2-356               ...................................................................................KVKE.LDFDVASLFKG--GSKTSAGQ-SKTP..AIKTTVTAQYPAERASGNDTStdMVLNDLYKNGLLFTAYNFSSRVSP....DLRNDRS...-SQMT..KKFS.SAASKLTGNSGTYSavknlfggntkGVKFDTQA.L...ANILLPRSKSDVDSVSHKFND.....VGESLITKGGGTAT.GILSN.................VAST...AVFGALE.......SVT.......N.GVMAD........................SGEQIYTTARSMYAGPDNRTKVFTWEMTPRNAQDLIQIIKIYEIFN.....YYSYGETGNSA..FAGE..LKEKIDTWYRSTFKKEAI..--D.KFDGKL...............LGESIT.SFLSNV..IVVSNP...TIW...YIRNFG...DSSSY.........DGREDIF...GPCQIQSIRFDKTPDGHFNGLA...IAPNLPS...T...FSLEVTFREIITLNRG-s.....................................
E3SP11_9CAUD/4-215               ............................................................rkrikyddgnsnsyyglnipnns----.--------------------------..---------------------..------------------------....-------...-----..----.--------------...........-VAMDKNPdR...VYIAMPQNLSTQYAPTYRQVD.....VGVTGMAMATGMGV.DTFDSa..............akALQT...AAKDALP.......EFI.......A.GTLADasagaaqflglagnatandimalsKGKVFNPYTEQLFSNMQFRNHNFSFKFFARSDRESREINKIIKYLK.....KGALPIYGSST..NLSDegDAGEIDDTLAST------..---.------...............------.------..------...---...------...-----.........-------...----------------------...-------...-...-----------------gaarffevpdkydikfir....................
E1A1D0_9CAUD/2-337               ..............................................................................rvtel----.LDGGVQDVVGGILKGENPATGSSPRR..PISKIAIAQFPAERNSANDSAqdFNVNDLYKNGLILSAFNYAGRQTG....DLRSFRS...--GQN..NIGD.YRKGVV--------...........-----KEA.I...ANILMPRGQTDVDTISHKFND.....VQQSLVERGDSSVT.GALSS.................MASH...ALYGGLE.......SIT.......Q.GAFAD........................RGEQVYIASRAMYAGAENRTKTYTWQLTPRNVYDLMQILIIYEMLS.....YYSYGAVEKSK..TASQ..IKSTLDKAYKETFINPLT..PEA.THGQTT...............MFERIT.SFLSNV..NVVSNP...IIW...TIRNFG...ETSSF.........DMRSDVF...GPAQIQSIRFDKSPDGHFGGLA...IAPNLPS...S...FVLEVTFREILALNRS-d.....................................
D5GVH8_9CAUD/20-237              tktfsasngaeilkftkalesdnfkhkqiiltvydpndfykkvkdaigqkmsslmaagtsafsgdgydssknsqtlkdasqdi----.--------------------------..---------------------..------------------------....-------...-----..----.--------------...........VDMSAVNI.L...YTIHLPLMNAFQEQNSHNYSE.....DTGILGSIA--NAA.NELSS.................TASS...GIIEAYGrfgdfggNTD.......N.MAFAP........................QLPQVDPLKWQNFKGSNLRTFQFTFKISPRNIDEASNMMRIFWLLK.....RSSYPKKEA--..----..------------------..---.------...............------.------..------...---...------...-----.........-------...----------------------...-------...-...-----------------ggvlli................................
D9IEN0_BPT4/3-358                .................................................................................iv--KE.I---TADLIKKS-GEKISAGQSTKSE..VGTKTYTAQFPTGRASGNDTTedFQVTDLYKNGLLFTAYNMSSRDSG....SLRSMRSn.ySSSSS..SILR.TARNTISSTVSKLSngli...snnnSGTISKSP.I...ANILLPRSKSDVDTSSHRFND.....VQESLISRGGGTAT.GVLSN.................IAST...AVFGALE.......SIT.......Q.GIMAD........................NNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFN.....YFSYGETGKSQ..YAAE..IKGYLDDWYRSTLIEPLS..PED.AAKNKT...............LFEKMT.SSLTNV..LVVSNP...TVW...MVKNFG...ATSKF.........DGKTEIF...GPCQIQSIRFDKTPNGNFNGLA...IAPNLPS...T...FTLEITMREIITLNRAS......................................
E5E4H9_9CAUD/2-357               ..................................................................................l-VKE.IVDSETNLIERI-GSFVAAGRSSKEE.eSKTKIFEAQYPDGRAAATDSVddARIQDLYANGLLFTAVEYKGRTTP....EMTDMRGq.vMKNMV..DAID.-QAKGVFNQLRGKSgg......nkkISSAIKNP.V...CQILLPRSKTDTDTISHKFND.....VNESLITRGNGTAT.GILSN.................LAST...AVFGAVE.......SIS.......Q.GVMAD........................HGEQIYNTSRAMYGGAENRTKTYTWELTPRTEGDLVQIIRIYELFS.....FFSYGVTGNSA..YAKE..IKGQIDDWYKKTFINNLT..PEG.ADRSGT...............MMESVT.SFLSNV..IVVSNP...TVW...FIQNFG...TMTTY.........DKHADVF...GPAQISNIRFDKAPDGNFSGLA...IAPNMPS...T...FVLEITFREILTLNRG-s.....................................
Q5QBV5_9CAUD/2-356               ...................................................................................KVKE.IDIDVASLFKG--GSKTSAGQ-SKAK..PAQTTVTAQYPAERASGNDTStdMVLNDLYKNGLLFTAYNFSSRVSP....DLRNDRS...-SQMT..KKFS.KAAGKLTSNTGGFSavknlfsnnskGVKFDSQA.L...ANILLPRSKSDVDSVTHKFND.....VGESLITKGGGTAT.GILSN.................VAST...AVFGALE.......SVT.......N.GVMAD........................SGEQIYTTARSMYAGPDNRTKVFTWEMTPRNAQDLIQIIKIYEIFN.....YYSYGETGNSA..FAGE..LKEKIDTWYRSTFKKEAI..--D.NFDGKL...............LGEGIT.SFLSNV..IVVSNP...TIW...YIRNFG...NTSSY.........DGREDIF...GPCQIQSIRFDKTPDGHFNGLA...IAPNLPS...T...FSLEVTFREIITLNRG-s.....................................
Q19CJ1_9CAUD/2-337               ..............................................................................rvtel----.LDGGIQDVVGGILKGENPATGSSPRR..PISKIAIAQFPAERNSANDSAqdFNVNDLYKNGLILSAFNYAGRQTG....DLRSFRS...--GQN..NIGD.YRKGVV--------...........-----KEA.I...ANILMPRGQTDVDTISHKFND.....VQQSLVERGDSSVT.GALSS.................MASH...ALYGGLE.......SIT.......Q.GAFAD........................RGEQVYIASRAMYAGAENRTKTYTWQLTPRNVYDLMQILTIYEMLS.....YYSYGAVEKSK..TASQ..IKSTLDNAYKETFINPLT..PEA.THGQTT...............MFERIT.SFLSNV..NVVSNP...IIW...TIRNFG...ETSSF.........DMRSDMF...GPAQIQSIRFDKSPDGHFGGLA...IAPNLPS...S...FVLEVTFREILALNRS-d.....................................
H6SUH3_9VIRU/16-237              ..lpkatktfsasngaeilkftkalesdnfkhkqiiltvydpndfykkvkdaigqkmsnlmsagtsvfsgdgydssdasqtlk----.--------------------------..---------------------..------------------------....-------...-----..----.-----------DAS...........QDIVDMSA.VnilYTIHLPLMNAFQEQNSHNYSE.....DTGILGSIA--NAA.NELSS.................TASS...GIIEAYG.......RFG.......DfGGNADnms..................fapQLPQVDPLKWQNFKGSNLRTFQFTFKISPRNIDEASNMMRIFWLLK.....RSSYPKKEA--..----..------------------..---.------...............------.------..------...---...------...-----.........-------...----------------------...-------...-...-----------------ggvlli................................
Q76YN8_9CAUD/12-331              ..................................................................................g-VKT.ISDAAGKFIGEFLSSPS---------..GETGIQALQYPLAMKGEADR-..------HKNYLCFYAVDATA----....------Q...GLSNS..DIQN.RSLNSVSGKFNEKT...........------IA.V...IQMYMP---SLNQNISHEYSDndggfLQDMMMNYAGSAGS.GIIETgkd..........lgiaLAKT...AIQQVTV.......NLG.......K.ATQQYna....................qlSGKVLGSRSANMYKNTSLRSQTFLYNLRPKNLAELKEVGQIIRAFL.....LYSSASSEGAT..SINS..MIGSIGGNANVL------..---.---QSE...............LGSG--.GGSESI..QVLKVP...PLW...YLEERI...NSQAAsa....eirYTPKFAM...GPCALTNIRITSTPEQIYNSFE...GTAGDPI...A...IDLELTFTELRPVFREY......................................
Q06ED5_BPR32/3-358               .................................................................................iv--KE.I---TADLIKKS-GEKISAGQSTKSE..VGTKTYTAQFPTGRASGNDTTgdFQVTDLYKNGLLFTAYNMSSRDSG....SLRSMRSn.ySSSSS..SILR.TARNTISSTVSKLSngli...snnnSGTISKAP.I...ANILLPRSKSDVDTSSHRFND.....VQESLISRGGGTAT.GVLSN.................IAST...AVFGALE.......SIT.......Q.GIMAD........................NNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFN.....YFSYGETGKSQ..YAAE..IKGYLDDWYRSTLIEPLS..PED.AAKNKT...............LFEKMT.SSLTNV..LVVSNP...TVW...MVKNFG...ATSKF.........DGKTEIF...GPCQIQSIRFDKTPNGNFNGLA...IAPNLPS...T...FTLEITMREIITLNRAS......................................
C3V2H9_BPR51/3-358               .................................................................................iv--KE.I---TADLIKKS-GETISAGQSTKSE..VGTKTYTAQFPTGRASGNDTTgdFQVTDLYKNGLLFTAYNMSSRDSG....SLRTMRSn.ySSSSS..SILR.TARNTISNTVSKLSngli...sdnnSGTISKVP.V...ANILLPRSKSDVDTSSHRFND.....VQDSLITKGGGTAT.GVLSN.................MAST...AVFGALE.......SIT.......Q.GIMAD........................NNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFN.....YFSYGETGKSQ..YAAE..IKGYLDEWYRSTFIEPLT..PED.AIKNKT...............LFEKMT.SSLTNV..LVVSNP...TIW...MVKNFG...ATSKF.........DGKTEVF...GPCQIQSIRFDKTPNGNFNGLA...IAPNLPS...S...FTLEITMREIITLNRAS......................................
D7RMJ8_9CAUD/3-357               ...................................................................................KVKE.LDFDVASLFKG--GSKTSAGQ-SKAK..PIQTTVTAQYPAERASGNDTStdMVLSDLYKNGLLFTAYNFSSRVSP....DLRNDRS...-SQMT..KKFS.KATGKLTGNTGGFSavknlfsnnskGVKFDNQA.L...ANILLPRSKSDVDSVTHKFND.....VGESLITKGGGTAT.GILSN.................VAST...AVFGALE.......SVT.......N.GVMAD........................SGEQIYTTARSMYAGPDNRTKVFTWEMTPRNAQDLIQIIKIYEIFN.....YYSYGETGNSA..FAGE..LKEKIDTWYRSTFKKEAI..--D.KFDGKL...............LGESIT.SFLSNV..IVVSNP...TIW...YIRNFG...DSSSY.........DGREDIF...GPCQIQSIRFDKTPDGHFNGLA...IAPNLPS...T...FSLEVTFREIITLNRG-s.....................................
D5GW26_9CAUD/26-237              ...sngaeilkftkalesdnfkhkqiiltvydpndfykkvkdaigqkmsslmaagtsafsgdgydssdasqtlkdagqdivdm----.--------------------------..---------------------..------------------------....-------...-----..----.--------------...........---SAVNI.L...YTIHLPLMNAFQEQNSHNYSE.....DTGILGSMS--NAA.NELSS.................TASS...GIIEAYG.......RFGdfggntdN.MAFAP........................QLPQVDPLKWQNFKGSNLRTFQFTFKISPRNIDEASNMMRIFWLLK.....RSSYPKKEA--..----..------------------..---.------...............------.------..------...---...------...-----.........-------...----------------------...-------...-...-----------------ggvlli................................
Q7Y4U4_BPR69/3-363               ..................................................................................s-VKE.IVVDAKDLNKAI-PVSESAGQSTKTE..TTTKTYVAQFPTGRAAGNDSTgdFQVTDLYKNGLLFTAYNMSARDSG....SLRNLRPayaGTSSN..GIIS.DLTDNVKDAVTKFSngll..paganKSTINKTP.V...ANILLPRSKSDVDTTSHRFND.....IGDSLITKGGGTAT.GVLSN.................IAST...AVFGALD.......SIT.......Q.GLMAD........................NNEQIYTTSRSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFN.....YFSYGETGKSQ..YAQE..IKSYLDEWYRSTFIEPMT..PDD.AVKNKT...............LFEKIT.ASLTNV..LVVSNP...TIW...MVKNFG...HTSKF.........DGLTDVF...GPCQIQSVRFDKTPNGQFNGLA...VAPNLPS...T...FTLEITMREIITLNRSS......................................
Q6U9B8_9CAUD/2-337               ..................................................................................k-VTElIDGGVQDVVKGILKGENPAGGSTPRQ..PLSKITIAQFPAERNAANDSTqdFNVNDLYKNGLLLSAFNYSGRQTG....DLRSFRT...--DQN..NIGD.YRKGVV--------...........-----KEA.I...ANILMPKGQTDIDTINHKFND.....VQQSLVERGNGSIT.GALSS.................MASH...AVYGGLE.......SIT.......Q.GAFAD........................RGEQVYIASRAMYAGAENRTKTYTWQLTPRNVYDLVEIIKIYEMLS.....YYSYGSVEKSN..TAND..IRKSVDAAYKETIINPLT..PEA.THGQTT...............MFERIT.SFLSNV..NVVSNP...IIW...TIRNFG...QSSSF.........DSRSDIF...GPAQIQSIRFDKSPDGHFGGLA...VAPNLPS...S...FVLEVTFREILALNRS-d.....................................
E1A284_9CAUD/7-328               ........................................................................llsngvktigd----.---AAGTFIGSLFSSPS---------..GESGILALQYPLAMKGNTD--..-----VHKNYLCMYCVDATG----....-----NG...GMSNA..SIER.RSMSSVKGKFNEKT...........------LA.V...IQMYMP---NLVQNISHDYGDndggfLQDMLMNFQGSMND.SVLENakg..........lgmaFAKT...AATQLAV.......NAG.......K.VSQQYna....................qiSGKILGDRSANMYKNTGLRSQTFLFNLRPKNLAELKEVGQIIRSFL.....VNSAASLDKPT..SVND..ILDTIGAGSMKT------..---.------...............--EVTA.GGSESI..QVLKVP...PLW...YLEERV...NNQSAka....eirYTPKFAM...GPCALTNVRITNTPEQVYNTFD...GTAGDPI...A...IDLELTFTELRPVFKK-y.....................................
H6T4P8_9VIRU/48-251              .................................................yyglnlpgntikkklhpnrvylalpnsiqtqyqp----.--------------------------..---------------------..------------------------....-------...-----..----.--------------...........--------.-...-----------------QYNQv...dLGVMGIAAAEMSAS.GNLDN.................IVNTiqsSAQAALP.......EFA.......A.SAIAStanrfgqmlglqgnldanslqaltKGRVFNPFTEQIFKNMAFRTHNFSFKMFIRNPQESREVYEIIRYIK.....EGAVPSIGGTD..QAE-..------------------..---.------...............------.------..------...---...------...-----.........-------...----------------------...-------...-...-----------------qdqltkdlnssgfgqlatsttgfktasssrffevpdkf
Q56EH9_9CAUD/2-337               ..................................................................................k-VTElIDGGVQDVVKGILKGENPAGGSTPRQ..PLSKITIAQFPAERNAANDSTqdFNVNDLYKNGLLLSAFNYSGRQTG....DLRSFRT...--DQN..NIGD.YRKGVV--------...........-----KEA.I...ANILMPKGQTDIDTINHKFND.....VQQSLVERGNGSIT.GALSS.................MASH...AVYGGLE.......SIT.......Q.GAFAD........................RGEQVYIASRAMYAGAENRTKTYTWQLTPRNVYDLVEIIKIYEMLS.....YYSYGSVEKSN..TAND..IRKSVDAAYKETIINPLT..PEA.THGQTT...............MFERIT.SFLSNV..NVVSNP...IIW...TIRNFG...QSSSF.........DSRSDIF...GPAQIQSIRFDKSPDGHFGGLA...VAPNLPS...S...FVLEVTFREILALNRS-d.....................................
H6BII5_9VIRU/48-251              .................................................yyglnlpgntikkklhpnrvylalpnsiqtqyqp----.--------------------------..---------------------..------------------------....-------...-----..----.--------------...........--------.-...-----------------QYNQv...dLGVMGIAAAEMSAS.GNLDN.................IVNTiqsSAQAALP.......EFA.......A.SAIAStanrfgqmlglqgnldanslqaltKGRVFNPFTEQIFKNMAFRTHNFSFKMFIRNPQESREVYEIIRYIK.....EGAVPSIGGTD..QAE-..------------------..---.------...............------.------..------...---...------...-----.........-------...----------------------...-------...-...-----------------qdqltkdlnssgfgqlatsttgfktasssrffevpdkf
C9DFX9_9CAUD/126-187             ........................................................................ttgkeskwwpk----.--------------------------..---------------------..------------------------....-------...-----..----.--------------...........--------.-...---------------------.....--------------.-----.................----...-------.......---.......-.-----........................----------------------------------------------.....-----------..----..------------------..---.------...............------.------..------...---...------...-----.........------I...GTCALTAVSVNRTPNGEFSVIRsgdGTAEVPS...S...TVIDLQFTELFVLSKE-n.....................................
E5EYX0_9CAUD/2-351               ..................................................................................k-VKE.IT--IANIVQA--GTDVSAGY-TNKR..SEPKTMIAQYPSERSSGNDAS.dMQISDLYRNGLLFTAYDYKSRTTP....DMRGMRK...--REQ..NKVK.ALYEQTRTQFNRITsgit...sespKKSVSQDP.V...ANILMPRSKSDSENINHKFND.....VGDSLITKGGGTMT.GAISN.................MAST...AVFGAIE.......SMT.......Q.GLLSD........................KGEQIYTTARSMYAGPENRTKVYSWELTPRTIDDLVQIIRIYEIFN.....FYSYGMTGNSQ..YAKE..LKSQIDEWYKKTFINNLT..PEG.SDRSGT...............MMESVT.AFLSNV..IVVTNP...TVW...FVRNFG...KTTKF.........DGRPDVF...GPAQIQSIRFDKAPDGNFRGLS...IAPNMPS...T...FVLEVTMREILTLSRG-t.....................................
G8EXX3_9CAUD/22-330              ...................................................................egateaidyvmfqrqq----.--------------------------..---------------------..------------------------....-------...----V..NYQD.NNKKYFGRNLPNND...........VEIINREA.R...VYMAMP--KALQTQYQPQYRQ.....VDLGVMGVAGVAA-.--LSDenfsa.......enltsIVQG...AAASGLP.......EFT.......T.NAIAQsinglsgmmglagnvdansiqaltRGRVFNPFKEQIFQNMSFRTHNFNFKLFSRNAEEAKQVNNILTYFK.....MGSVPRLT-GT..DDDT..LSDTISGIKNADG-TSAN..LDN.PFENAA...............-----A.DLSRNA..RFMSVPdnfKIK...FVRMNP...DGQLTg......ekENMHFKI...HPSVCTGISINYTPDGQYTSFK...TLGEKQVqvpA...ITLALTFTELKLITQ--ed....................................
Q58LT7_BPPRS/71-321              ...............................................................................gksd----.--------------------------..---------------------..------------------------....-------...-----..----.--------------...........--------.-...------------------FTD.....LAKTLQEAAGAALP.EFSTN.................MVLQ...MVNGFNN.......FVG......lQ.GNLDLnai.................enlqQGRIFNPYSEQIFQGMSFRTHNFAFKFFARDAQESKTIQNIIDYVKigslpRLRSGNMGKKY..TNNQ..STFKIDGNDKVTSVTRKDekNYR.NLWQDN...............FFKKYNeGYAKNN..RFFEIP...DRF...QLRFVR...FGANAtggmnnlgeSTRRDLMfkiYPSVCTGISVNYTPDNQYVAFK...QPIDDGI...SvpsVVLQLSFTETRLL----tend..................................
#=GC seq_cons                    ........................................................................................h...hhs.htt..stt.suG..o.tt....pthhsAQaPstRsuusDss..h.hssLYpNGLLFoAashsup.os....phRs.Rp.....ttp..phhp.tttssl..th.t.s..............hspps.l...ssILhPRupoDs-ssSH+FND.....Vt-SLls+Guuouo.GhLSN.................hAST...AlaGulE.......Slo.......p.GhhAD........................pGEQlhssu+uMYsGs-sRTKsFoachoPRshpDLhpIlpIYchFp.....hhSYGpsGpSp..hAt-..l+s.lDshY+sThhp.h.....s.s.tsps...............hhEthT.uhloNV..hVlosP...slW...hl+sFu...pssph.........-shp-hF...GPstIpSIRhsKoP-GpFsuLA...huPNhPS...o...hsLElThpEllsLsRu.......................................
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