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Database: Pfam
Entry: TraC
LinkDB: TraC
Original site: TraC 
#=GF ID   TraC
#=GF AC   PF07820.10
#=GF DE   TraC-like protein
#=GF AU   Fenech M
#=GF SE   Pfam-B_9690 (release 14.0)
#=GF GA   20.80 20.80;
#=GF TC   21.20 33.20;
#=GF NC   20.60 20.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   12591886
#=GF RT   Conjugative transfer of p42a from rhizobium etli CFN42, which is
#=GF RT   required for mobilization of the symbiotic plasmid, is regulated
#=GF RT   by quorum sensing. 
#=GF RA   Tun-Garrido C, Bustos P, Gonzalez V, Brom S; 
#=GF RL   J Bacteriol 2003;185:1681-1692.
#=GF DR   INTERPRO; IPR012930;
#=GF CC   The members of this family are sequences that are similar to
#=GF CC   TraC (Swiss:Q84HT8). The gene encoding this protein is one of a
#=GF CC   group of genes found on plasmid p42a of Rhizobium etli CFN42
#=GF CC   that are thought to be involved in the process of plasmid
#=GF CC   self-transmission. Mobilisation of plasmid p42a is of importance
#=GF CC   as it is required for transfer of plasmid p42a, which is also
#=GF CC   known as plasmid pSym as it carries most of the genes required
#=GF CC   for nodulation and nitrogen fixation by the symbiotic bacterium.
#=GF CC   The predicted protein products of p42a are similar to known
#=GF CC   transfer proteins of Agrobacterium tumefaciens plasmid pTiC58
#=GF CC   [1].
#=GF SQ   37
#=GS B9K370_AGRVS/5-74      AC B9K370.1
#=GS A0A0J6R8T2_9RHIZ/4-91  AC A0A0J6R8T2.1
#=GS Q1QEW9_NITHX/2-86      AC Q1QEW9.1
#=GS B9K4J6_AGRVS/2-98      AC B9K4J6.1
#=GS C3KQZ9_RHISN/4-91      AC C3KQZ9.1
#=GS V5RDS0_9RHIZ/9-97      AC V5RDS0.1
#=GS Q2K2P3_RHIEC/2-98      AC Q2K2P3.1
#=GS TRAC_AGRFC/2-98        AC Q44348.1
#=GS K0Q4I1_9RHIZ/2-98      AC K0Q4I1.1
#=GS F8C169_OLICO/2-89      AC F8C169.1
#=GS A0A0M3AX32_9RHIZ/2-98  AC A0A0M3AX32.1
#=GS A7IQA5_XANP2/4-77      AC A7IQA5.1
#=GS A0A0F5PSD2_9RHIZ/2-81  AC A0A0F5PSD2.1
#=GS B9JPA5_AGRRK/54-150    AC B9JPA5.1
#=GS Q11MR6_CHESB/4-74      AC Q11MR6.1
#=GS Q8KL70_RHIEC/4-91      AC Q8KL70.1
#=GS A0A0B4XAI7_9RHIZ/2-98  AC A0A0B4XAI7.1
#=GS N8YFM1_9GAMM/3-92      AC N8YFM1.1
#=GS B9QRL0_LABAD/20-96     AC B9QRL0.1
#=GS A0A0F5FEA3_9RHIZ/2-82  AC A0A0F5FEA3.1
#=GS TRAC_RHISN/2-102       AC P55419.1
#=GS A0A0B4XBY7_9RHIZ/2-98  AC A0A0B4XBY7.1
#=GS B9K3N6_AGRVS/29-125    AC B9K3N6.1
#=GS B9JE51_AGRRK/4-74      AC B9JE51.1
#=GS A6WWM3_OCHA4/4-91      AC A6WWM3.1
#=GS W6RGI4_9RHIZ/2-98      AC W6RGI4.1
#=GS A9CLN4_AGRFC/4-91      AC A9CLN4.1
#=GS A0A0F5LUV0_9RHIZ/2-81  AC A0A0F5LUV0.1
#=GS K0Q016_9RHIZ/2-98      AC K0Q016.1
#=GS F2ACR1_RHIET/4-91      AC F2ACR1.1
#=GS K2QK84_9RHIZ/2-98      AC K2QK84.1
#=GS A0A0F5LQM1_9RHIZ/2-87  AC A0A0F5LQM1.1
#=GS Q92ZI1_RHIME/4-91      AC Q92ZI1.1
#=GS B1M956_METRJ/4-116     AC B1M956.1
#=GS B9K3V5_AGRVS/2-98      AC B9K3V5.1
#=GS A0A0B4X781_9RHIZ/4-90  AC A0A0B4X781.1
#=GS K5Z1F2_9PROT/7-71      AC K5Z1F2.1
B9K370_AGRVS/5-74                 ........t-KSPAEIKAAMEALKVEL...KEAEAREAERLGSLAVKAGLHEIDIDDAVLVSALKELAARFQ.............SSSQLS-------------.---------ntta...........................
A0A0J6R8T2_9RHIZ/4-91             .......vk--SRAALLAEIEEATKRL...KAHDKAEAERIGHLALKAGLASISMAEEVLLKAFEELAARFQ.............AEYPAV-AEPKTKGRRSAGpAQAGADGQ-a..............................
Q1QEW9_NITHX/2-86                 .........KKPSRQIRDEIARLQEQL...KQAETREAERIGRVALKAGLGEIEIEETMLLSAFEEVASRFR.............---KSGGRTSKAATGVASG.ASAGAPQE-g..............................
B9K4J6_AGRVS/2-98                 .........KKPSSKIREEIAKLQDQL...RAAETREAERIGRIALKAGIGEIEIDEAELQAAFEEIARRFRggkg....patgkENGHGDKPDRDTRPSFTPG.ADAGGPGEA...............................
C3KQZ9_RHISN/4-91                 .......qa--SIPELDAQIERLKERR...KLLVVKSAERFARAATKAGLAEMEISDDQLGAIFTELAARFR.............KSERKGLAGASPQTRRPAD.IGAGTTAK-a..............................
V5RDS0_9RHIZ/9-97                 .........KKPTAKIREEIARLQEQL...KQAETRDAERIGRIALRAGLGEIEIEEGELLSAFEEVAARFR............aQARPAQGRKPATTPPNGAG.EAAGRSAEA...............................
Q2K2P3_RHIEC/2-98                 .........KKPSSKIRDEIAKLQEQL...KAAETREAERIGRIALKAGLGEIEIDESELQAAFEDLAKRFRggkv....tanggKRGSSAGESSASSTQDASG.AAAGGTAEA...............................
TRAC_AGRFC/2-98                   .........KKPSSKIREEIARLQDQL...KQAETREAERIGRIALKAGLGEIDIEESQLQAAFEEVAKRFRggkg....satgkRQAGESRTGTEPSAALASG.ADEGGSGEA...............................
K0Q4I1_9RHIZ/2-98                 .........KKSASRIREDIAKLQDQL...KQAETKDAERIGRIALKAGLGEIEVEEADLHAALADLAGRFRkgka....lsngmERAGPGSTSTTEMAPVTSG.AAESSAG--ea.............................
F8C169_OLICO/2-89                 .........KKPSRQIREEIARLQDQL...KAAETREAERIGRLALKAGLGDLEIEEDALLAAFEEAAARFR.............KAGGGSKPTRAAPASEPPG.TSAGKASEA...............................
A0A0M3AX32_9RHIZ/2-98             .........KKPTSKIREELARLQEQL...KQAETRDAERIGRIALKAGLGEIEVDDADLQAAFEDVAKRFRgtka....gsngkEKGAAGATGTSSATSLSAG.AATSQAGEA...............................
A7IQA5_XANP2/4-77                 .........KSSLSEIDAQIEKLRERR...KFLVVKAGERFARAAAKAGLVELEIPDEELDAICEEIAARFR.............KGAKAKGTAGSSA------.---------p..............................
A0A0F5PSD2_9RHIZ/2-81             .........KQRATKLRDEIAKLQDQL...KQAETREAERIGRLALKAGLGDIEIADGDLVKSFEELSIRFR.............KATGAKAPASGAP------.---------qsgtqad........................
B9JPA5_AGRRK/54-150               .........KKPSSKIREEIARLQDQL...KQAETREAERIGRIALKAGLGEIEIEEAELQAAFEDVAKRFRggkg....satgkRQAGDSRTGSEPSAALASG.ADEGGSGEA...............................
Q11MR6_CHESB/4-74                 .........KSSISEIDAQIDKLREKR...RGILAKANERFARAAAKAGLAEMDIPDNELDAVFEEIAARFR.............KSAKGPSG-----------.---------asa............................
Q8KL70_RHIEC/4-91                 .........KSSISDLDAQIEKLRERK...RLLIVKSAERFARAATRTGLAEMEIADEEVDRIIEEIAARFR.............KGERKGAAGPTPQTRRSGD.SGAGAQGQA...............................
A0A0B4XAI7_9RHIZ/2-98             .........KKPASKIRDEIAKLQEQL...KAAETREAERIGRIALKAGLGEIEIDEAELQAAFEDLAKRFRrgka....atnggKRGGNASESSASSTQDAAG.AAASGTAEA...............................
N8YFM1_9GAMM/3-92                 rkplnqkks--------EALAKLEAAKaeiEKIEKAEAERVGRLAIRAGLTELDIKDSDLLDAFKELAARFQ.............QKNEAVNTPQNTTTHST--.---------fttghstne......................
B9QRL0_LABAD/20-96                ...ktaseq---IDDIEAQIAKLQQKK...RQVLKKQSERVAKLVMESGLAELDIDEAELAKALNDLAARFQ.............KPAASQNHAAAP-------.---------qn.............................
A0A0F5FEA3_9RHIZ/2-82             ........r-RPSSRIREEIERLQEQL...KLAEAKEAERIGRLALKAGLGDVNASDTELITGFEEMAKRFQ.............TGTKQKAPGPAARSQADAS.---------da.............................
TRAC_RHISN/2-102                  .........KKPASKIRDEIAKLQEQL...RQAETREAERIGRIALKAGLGGIEVEEAELQAAFESLAKRFRggqggangassggKKPDGNATAGASAAAVGSG.AAQGGNGEA...............................
A0A0B4XBY7_9RHIZ/2-98             .........KKPSSKIRDEIAKLQEQL...RTAETREAERIGRIALKAGLGEIEIDEAELQAAFEDVAKRFRggka....gsngkERGGAGSGNPAETAAVTRG.AAQGSGSEA...............................
B9K3N6_AGRVS/29-125               .........KKPSSKIREEIARLQDQL...KQAETREAERIGRIALKAGLGEIEIEEAELQAAFEEVAKRFRggkg....satgkRQAGDSRTGREPSATLAPR.ADEGGPGEA...............................
B9JE51_AGRRK/4-74                 .........KTTVSEIDTQIELLKEKR...ENMVAKANERFVRAALKAGLAELDIPDAELNTAFAEIAARFR.............DDEKRATG-----------.---------asa............................
A6WWM3_OCHA4/4-91                 .........KNSILDIDTQIEKLHERR...KELLVKSAERFARAATKSGLAEMDIADTEIDQIISEITTRFR.............ERKKGNSGGASAASHRKTN.GGTGASTEV...............................
W6RGI4_9RHIZ/2-98                 .........KKPSAKIRDEIAKLQEQL...KIAETREAERIGRIALKAGLGEIEIDEAELQAAFEQVTKRFRggqg....vttggKKGAGESGGATPTATDASG.AGAGSAGEA...............................
A9CLN4_AGRFC/4-91                 .........KPALMDIDAQIEKLRERR...KTLIVKSADRFARAATKSGLAEMEIADEEVDRIFDEIAARFR.............NGEKKQAAGSPASPRGQAN.GATGSETEV...............................
A0A0F5LUV0_9RHIZ/2-81             .........KKPVIKLRDEIARLQEQL...KQAETKEAGRIGRIALRAGLGDVEVEDSDLIKAFEELSARFR.............KATGAKEAAPGA-------.---------pqgntrtd.......................
K0Q016_9RHIZ/2-98                 .........KKPSSKIRDEIARLQEQL...KAAETREAERIGRIALKAGLGEIEVDEAELLAGFEELAKRFRggkg....gsnggKRAGAAGEASTSPAQNPPG.APAGGTAEA...............................
F2ACR1_RHIET/4-91                 .........KSSISDLDAQIEKLRERK...RLLIVKSAERFARAATRTGLAEMEIADEEVDRIIEEIAARFR.............KGERKGAAGPTPQTRRPAD.SGAGAQGQV...............................
K2QK84_9RHIZ/2-98                 .........KKPSSKIRQEIAKLQEQL...KTAETREAERIGRIAVRAGLGDIETDETALQAAFEDLAKRFHagkp....satarK----------G--TNESG.AGRG-----qpetiatgpasgrldea..............
A0A0F5LQM1_9RHIZ/2-87             .........KKPSSRIRDEIAKLQEQL...KLAETREAERIGRVALRAGLGEIAIEDADLLAAFEELAARFR.............KA--GGRTSRPVPPAVAPG.AATGPDSEA...............................
Q92ZI1_RHIME/4-91                 .........KSSIADIDAQIEKLRARR...RSLIVKSAERFARAATKSGLAEMEITEEELDRIFEEMAARFR.............KGEKKGVDHATASPHRPAA.GATGTAAEV...............................
B1M956_METRJ/4-116                ......lqs---RKTILKEIAALQEKL...KEHDKAQAERIGRLALRSGLATLDIPEASLMAEFEILATRFR.............QQAAAEPQQTGEESQGEGS.EAD------gigdpgssstdasdaeaatdpapaavgktar
B9K3V5_AGRVS/2-98                 .........KKPSLKIREEIARLQDQL...RQAETREAERVGRIALKAGLGEIEIEETELQAAFEEITGRFRggka....astgkRNAGDGRTAGETVTTIETG.AA-------assgrea........................
A0A0B4X781_9RHIZ/4-90             ......klw---ISELDAQIEKLKERR...RFLIVKSAERFAHAATKAGLAEMDLSDGELDGIVAEIAARFQ.............KKPKATA-ATSPQPHRPEA.GRTGTPA--av.............................
K5Z1F2_9PROT/7-71                 ..narriea-------QRELEEAQARL...TKLQNEAATRIGRIAVKTGLADLGLSDDEIKLEFEKIISGIK.............Q------------------.---------gers...........................
#=GC seq_cons                     .........KpssucIccEIA+LQEpL...KtsEs+-AERIGRlALKAGLuElEIs-sELpuAFEElAsRFR.............ctstssssussstst.sss.ustut.s.................................
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