GenomeNet

Database: Pfam
Entry: UBN2
LinkDB: UBN2
Original site: UBN2 
#=GF ID   UBN2
#=GF AC   PF14223.1
#=GF DE   gag-polypeptide of LTR copia-type
#=GF AU   Coggill P
#=GF SE   Jackhmmer:A5B9L3
#=GF GA   27.00 27.00;
#=GF TC   27.00 27.00;
#=GF NC   26.90 26.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF CC   This family is found in Plants and fungi, and contains
#=GF CC   LTR-polyproteins, or retrotransposons of the copia-type.
#=GF SQ   1538
#=GS H9JXX8_BOMMO/85-197     AC H9JXX8.1
#=GS A5C3S7_VITVI/1-68       AC A5C3S7.1
#=GS Q53Q05_ORYSJ/129-243    AC Q53Q05.1
#=GS Q2RBH8_ORYSJ/86-209     AC Q2RBH8.1
#=GS A5ASL0_VITVI/38-131     AC A5ASL0.1
#=GS Q1KUM3_9ROSI/118-230    AC Q1KUM3.1
#=GS Q4P471_USTMA/110-191    AC Q4P471.1
#=GS D8ULB0_VOLCA/45-97      AC D8ULB0.1
#=GS B9N8K4_POPTR/16-128     AC B9N8K4.1
#=GS B9PB62_POPTR/65-120     AC B9PB62.1
#=GS Q688I4_ORYSJ/86-196     AC Q688I4.1
#=GS F2URS8_SALS5/182-291    AC F2URS8.1
#=GS Q75L70_ORYSJ/74-186     AC Q75L70.1
#=GS Q2QUP2_ORYSJ/61-178     AC Q2QUP2.1
#=GS G7ZWV0_MEDTR/71-189     AC G7ZWV0.1
#=GS A5BLV7_VITVI/73-191     AC A5BLV7.1
#=GS Q7XWZ9_ORYSJ/411-528    AC Q7XWZ9.1
#=GS A5BUM5_VITVI/53-167     AC A5BUM5.1
#=GS A5BX33_VITVI/7-97       AC A5BX33.1
#=GS Q2QPC0_ORYSJ/111-206    AC Q2QPC0.2
#=GS A5BBA8_VITVI/13-131     AC A5BBA8.1
#=GS C5XQL8_SORBI/94-206     AC C5XQL8.1
#=GS Q84VH8_SOYBN/103-221    AC Q84VH8.1
#=GS A5C125_VITVI/68-186     AC A5C125.1
#=GS A5ATR3_VITVI/62-179     AC A5ATR3.1
#=GS A5C7C5_VITVI/105-202    AC A5C7C5.1
#=GS D7MS18_ARALL/55-166     AC D7MS18.1
#=GS Q7XL37_ORYSJ/181-304    AC Q7XL37.2
#=GS E9IXW5_SOLIN/1-59       AC E9IXW5.1
#=GS E3K7L7_PUCGT/158-268    AC E3K7L7.2
#=GS Q33BC8_ORYSJ/86-203     AC Q33BC8.2
#=GS A5AYU6_VITVI/105-223    AC A5AYU6.1
#=GS C7J163_ORYSJ/1-72       AC C7J163.1
#=GS A5ACV9_VITVI/89-207     AC A5ACV9.1
#=GS Q656B7_ORYSJ/93-198     AC Q656B7.1
#=GS Q2QS45_ORYSJ/69-181     AC Q2QS45.1
#=GS G7KS36_MEDTR/116-234    AC G7KS36.1
#=GS Q94I41_ORYSJ/94-212     AC Q94I41.1
#=GS Q75HF5_ORYSJ/59-116     AC Q75HF5.1
#=GS A5BF87_VITVI/115-227    AC A5BF87.1
#=GS H3H193_PHYRM/88-186     AC H3H193.1
#=GS Q7XX19_ORYSJ/172-283    AC Q7XX19.2
#=GS B9G606_ORYSJ/608-672    AC B9G606.1
#=GS A0EVH4_MAIZE/179-296    AC A0EVH4.1
#=GS B6REM4_9BRAS/76-193     AC B6REM4.1
#=GS Q8LME7_ORYSJ/34-146     AC Q8LME7.1
#=GS Q7XN18_ORYSJ/140-239    AC Q7XN18.1
#=GS F2U9G1_SALS5/182-291    AC F2U9G1.1
#=GS A5BKR3_VITVI/259-372    AC A5BKR3.1
#=GS Q6I5C1_ORYSJ/64-176     AC Q6I5C1.1
#=GS Q53LP5_ORYSJ/239-356    AC Q53LP5.1
#=GS Q10B81_ORYSJ/149-212    AC Q10B81.1
#=GS B9IJQ0_POPTR/91-149     AC B9IJQ0.1
#=GS A5AWL3_VITVI/1413-1509  AC A5AWL3.1
#=GS A5BWU6_VITVI/8-120      AC A5BWU6.1
#=GS A5BQ76_VITVI/412-523    AC A5BQ76.1
#=GS B9N552_POPTR/1-83       AC B9N552.1
#=GS F2UGV4_SALS5/59-168     AC F2UGV4.1
#=GS E3K602_PUCGT/101-180    AC E3K602.1
#=GS Q2QSC4_ORYSJ/1-88       AC Q2QSC4.1
#=GS Q6ATD3_ORYSJ/129-248    AC Q6ATD3.1
#=GS A5B827_VITVI/92-205     AC A5B827.1
#=GS A5BEL1_VITVI/416-529    AC A5BEL1.1
#=GS A5AYP6_VITVI/1-73       AC A5AYP6.1
#=GS Q7XBD2_MAIZE/176-293    AC Q7XBD2.1
#=GS C7J8Z6_ORYSJ/177-289    AC C7J8Z6.1
#=GS C7IZA8_ORYSJ/38-156     AC C7IZA8.1
#=GS I1R5P2_ORYGL/221-338    AC I1R5P2.1
#=GS A5C013_VITVI/129-241    AC A5C013.1
#=GS B9NH66_POPTR/90-202     AC B9NH66.1
#=GS A5B952_VITVI/74-187     AC A5B952.1
#=GS Q7G2S6_ORYSJ/135-253    AC Q7G2S6.1
#=GS Q84VH6_SOYBN/103-221    AC Q84VH6.1
#=GS G7L9C8_MEDTR/118-236    AC G7L9C8.1
#=GS B9ESZ7_ORYSJ/516-634    AC B9ESZ7.1
#=GS A2ZS99_ORYSJ/83-194     AC A2ZS99.1
#=GS G7JSG3_MEDTR/100-218    AC G7JSG3.1
#=GS G7J087_MEDTR/675-746    AC G7J087.1
#=GS C5Y2W7_SORBI/80-190     AC C5Y2W7.1
#=GS O22452_VOLCA/41-152     AC O22452.1
#=GS A5AV22_VITVI/152-264    AC A5AV22.1
#=GS Q7XXJ0_ORYSJ/34-151     AC Q7XXJ0.2
#=GS C6JSH8_SORBI/74-185     AC C6JSH8.1
#=GS A5AVB4_VITVI/1-74       AC A5AVB4.1
#=GS Q9ZQE9_ARATH/91-209     AC Q9ZQE9.1
#=GS Q7XME6_ORYSJ/116-234    AC Q7XME6.2
#=GS Q9LPK1_ARATH/1-110      AC Q9LPK1.2
#=GS Q7FAG8_ORYSJ/20-141     AC Q7FAG8.1
#=GS Q10IL5_ORYSJ/129-187    AC Q10IL5.1
#=GS A5B195_VITVI/957-1069   AC A5B195.1
#=GS Q10GT3_ORYSJ/100-219    AC Q10GT3.1
#=GS Q9SV56_ARATH/103-217    AC Q9SV56.1
#=GS A5B338_VITVI/57-131     AC A5B338.1
#=GS Q75LJ1_ORYSJ/106-218    AC Q75LJ1.1
#=GS Q657V0_ORYSJ/88-199     AC Q657V0.1
#=GS A5CAK2_VITVI/89-207     AC A5CAK2.1
#=GS Q8SAX3_ORYSJ/149-212    AC Q8SAX3.1
#=GS A5AV72_VITVI/89-207     AC A5AV72.1
#=GS Q8LM60_ORYSJ/86-209     AC Q8LM60.1
#=GS Q9M197_ARATH/89-207     AC Q9M197.1
#=GS A2X197_ORYSI/240-324    AC A2X197.1
#=GS A5AS82_VITVI/49-140     AC A5AS82.1
#=GS Q10IE2_ORYSJ/162-274    AC Q10IE2.1
#=GS A5B5X0_VITVI/98-188     AC A5B5X0.1
#=GS A5B044_VITVI/119-229    AC A5B044.1
#=GS Q53LJ7_ORYSJ/976-1095   AC Q53LJ7.1
#=GS A5BWX7_VITVI/71-162     AC A5BWX7.1
#=GS A5B570_VITVI/8-120      AC A5B570.1
#=GS A5CAE5_VITVI/64-176     AC A5CAE5.1
#=GS B9H8V7_POPTR/65-183     AC B9H8V7.1
#=GS E5GBB9_CUCME/100-198    AC E5GBB9.1
#=GS C5XMB1_SORBI/76-188     AC C5XMB1.1
#=GS Q8S5R3_ORYSJ/1-96       AC Q8S5R3.1
#=GS C7J5A1_ORYSJ/109-172    AC C7J5A1.1
#=GS Q5KQB0_ORYSJ/105-217    AC Q5KQB0.1
#=GS C5YJ58_SORBI/181-300    AC C5YJ58.1
#=GS Q2A9A5_BRAOL/75-181     AC Q2A9A5.1
#=GS G7KGY1_MEDTR/46-164     AC G7KGY1.1
#=GS Q2QQL7_ORYSJ/229-333    AC Q2QQL7.2
#=GS F4RWA9_MELLP/102-211    AC F4RWA9.1
#=GS C0P9H8_MAIZE/232-343    AC C0P9H8.1
#=GS A5BLT7_VITVI/41-153     AC A5BLT7.1
#=GS G7JX17_MEDTR/51-121     AC G7JX17.1
#=GS B9HGE2_POPTR/86-166     AC B9HGE2.1
#=GS E4Z8M1_MALDO/47-163     AC E4Z8M1.1
#=GS Q2QLK1_ORYSJ/101-166    AC Q2QLK1.1
#=GS A5AWZ0_VITVI/118-201    AC A5AWZ0.1
#=GS G7KCK7_MEDTR/115-164    AC G7KCK7.1
#=GS F2E9A5_HORVD/124-236    AC F2E9A5.1
#=GS H0I497_SORBI/1-83       AC H0I497.1
#=GS Q0KIL6_SOLDE/91-204     AC Q0KIL6.1
#=GS E3JUT8_PUCGT/150-258    AC E3JUT8.1
#=GS A5C8B4_VITVI/92-210     AC A5C8B4.1
#=GS Q0JR31_ORYSJ/110-221    AC Q0JR31.1
#=GS Q9LJD2_ARATH/94-203     AC Q9LJD2.1
#=GS Q53K97_ORYSJ/225-319    AC Q53K97.1
#=GS B9NHE0_POPTR/90-167     AC B9NHE0.1
#=GS Q84TT0_ORYSJ/43-149     AC Q84TT0.1
#=GS A5BKV3_VITVI/111-205    AC A5BKV3.1
#=GS A5BM54_VITVI/89-188     AC A5BM54.1
#=GS A5ANU6_VITVI/96-209     AC A5ANU6.1
#=GS Q7FAB9_ORYSJ/149-267    AC Q7FAB9.1
#=GS A5AWN8_VITVI/89-155     AC A5AWN8.1
#=GS Q7XTX2_ORYSJ/128-247    AC Q7XTX2.1
#=GS A5BK45_VITVI/89-170     AC A5BK45.1
#=GS A5ALN4_VITVI/1-74       AC A5ALN4.1
#=GS G7I8L5_MEDTR/118-236    AC G7I8L5.1
#=GS A5B979_VITVI/112-224    AC A5B979.1
#=GS G7IBK3_MEDTR/40-151     AC G7IBK3.1
#=GS B9NHX8_POPTR/109-227    AC B9NHX8.1
#=GS Q2R2I1_ORYSJ/109-221    AC Q2R2I1.1
#=GS A5AZM7_VITVI/1-83       AC A5AZM7.1
#=GS A9TTE2_PHYPA/8-89       AC A9TTE2.1
#=GS Q10LM5_ORYSJ/86-203     AC Q10LM5.1
#=GS Q53RL5_ORYSJ/112-231    AC Q53RL5.1
#=GS Q0J0Z8_ORYSJ/369-486    AC Q0J0Z8.2
#=GS Q84VI2_SOYBN/103-221    AC Q84VI2.1
#=GS Q2HSQ1_MEDTR/1-110      AC Q2HSQ1.2
#=GS Q10MM3_ORYSJ/236-359    AC Q10MM3.1
#=GS F2U9G2_SALS5/73-182     AC F2U9G2.1
#=GS B9P6D7_POPTR/37-151     AC B9P6D7.1
#=GS A5BRW6_VITVI/90-208     AC A5BRW6.1
#=GS Q2HU84_MEDTR/69-180     AC Q2HU84.1
#=GS Q2R1E3_ORYSJ/7-93       AC Q2R1E3.1
#=GS Q7XKV9_ORYSJ/104-207    AC Q7XKV9.2
#=GS A5BM97_VITVI/76-187     AC A5BM97.1
#=GS D2A543_TRICA/77-191     AC D2A543.1
#=GS F8B6S4_FRADG/292-385    AC F8B6S4.1
#=GS A5BDE9_VITVI/178-279    AC A5BDE9.1
#=GS I1MJ48_SOYBN/216-317    AC I1MJ48.1
#=GS Q7XUD9_ORYSJ/115-233    AC Q7XUD9.2
#=GS A5ACL2_VITVI/25-137     AC A5ACL2.1
#=GS Q9LH61_ARATH/22-141     AC Q9LH61.1
#=GS Q2QRS5_ORYSJ/79-141     AC Q2QRS5.1
#=GS Q851U4_ORYSJ/86-203     AC Q851U4.1
#=GS G7IB25_MEDTR/82-180     AC G7IB25.1
#=GS Q9LJC9_ARATH/91-206     AC Q9LJC9.1
#=GS C5Y6G8_SORBI/110-221    AC C5Y6G8.1
#=GS G5A2F4_PHYSP/75-160     AC G5A2F4.1
#=GS B9GJW5_POPTR/3-111      AC B9GJW5.1
#=GS G7K9Y4_MEDTR/115-233    AC G7K9Y4.1
#=GS A5AI19_VITVI/58-133     AC A5AI19.1
#=GS B6TVF1_MAIZE/81-199     AC B6TVF1.1
#=GS Q2QV65_ORYSJ/86-209     AC Q2QV65.2
#=GS I1MMG8_SOYBN/116-227    AC I1MMG8.1
#=GS A5C0Y4_VITVI/133-222    AC A5C0Y4.1
#=GS A5BFX8_VITVI/52-161     AC A5BFX8.1
#=GS B9GKP2_POPTR/91-161     AC B9GKP2.1
#=GS A0MEX5_ARATH/93-212     AC A0MEX5.1
#=GS B9N6H7_POPTR/91-209     AC B9N6H7.1
#=GS H9JXZ0_BOMMO/86-204     AC H9JXZ0.1
#=GS G5A0R2_PHYSP/1-67       AC G5A0R2.1
#=GS Q7XMF7_ORYSJ/200-312    AC Q7XMF7.1
#=GS C7JA11_ORYSJ/38-155     AC C7JA11.1
#=GS A5B3T7_VITVI/89-196     AC A5B3T7.1
#=GS A5BVL8_VITVI/1-95       AC A5BVL8.1
#=GS A5B1B1_VITVI/58-163     AC A5B1B1.1
#=GS Q8H897_ORYSJ/734-798    AC Q8H897.1
#=GS B9MXT9_POPTR/91-209     AC B9MXT9.1
#=GS I1P9X1_ORYGL/94-212     AC I1P9X1.1
#=GS Q10IC4_ORYSJ/112-231    AC Q10IC4.1
#=GS A5BPS3_VITVI/71-157     AC A5BPS3.1
#=GS Q8H7T1_ORYSJ/85-203     AC Q8H7T1.1
#=GS A5BVV8_VITVI/90-192     AC A5BVV8.1
#=GS A2Y2S9_ORYSI/26-138     AC A2Y2S9.1
#=GS G7IIL5_MEDTR/585-686    AC G7IIL5.1
#=GS Q109L4_ORYSJ/86-203     AC Q109L4.1
#=GS H3H7A5_PHYRM/1-63       AC H3H7A5.1
#=GS Q2R3J5_ORYSJ/86-199     AC Q2R3J5.1
#=GS A5AMT2_VITVI/80-198     AC A5AMT2.1
#=GS O81824_ARATH/39-141     AC O81824.1
#=GS G7I951_MEDTR/17-78      AC G7I951.1
#=GS A5BMX7_VITVI/105-214    AC A5BMX7.1
#=GS Q9ZUF5_ARATH/113-230    AC Q9ZUF5.1
#=GS Q8H851_ORYSJ/86-203     AC Q8H851.1
#=GS Q94GC0_ORYSJ/80-183     AC Q94GC0.1
#=GS E3KX83_PUCGT/160-270    AC E3KX83.2
#=GS A5ARB0_VITVI/89-199     AC A5ARB0.1
#=GS A5BCD2_VITVI/1-90       AC A5BCD2.1
#=GS B0E2I2_LACBS/73-186     AC B0E2I2.1
#=GS A5AGN2_VITVI/113-225    AC A5AGN2.1
#=GS A5BMW1_VITVI/86-162     AC A5BMW1.1
#=GS Q01MW9_ORYSA/77-148     AC Q01MW9.1
#=GS E2DN03_BETVU/90-208     AC E2DN03.1
#=GS A5ANC5_VITVI/121-233    AC A5ANC5.1
#=GS Q8TFJ7_KLUMA/288-385    AC Q8TFJ7.1
#=GS Q84VI0_SOYBN/105-222    AC Q84VI0.1
#=GS Q01LI0_ORYSA/85-203     AC Q01LI0.1
#=GS Q94I65_ORYSJ/107-220    AC Q94I65.1
#=GS Q01M13_ORYSA/109-227    AC Q01M13.1
#=GS G7KII3_MEDTR/88-143     AC G7KII3.1
#=GS Q9SXQ4_ARATH/104-215    AC Q9SXQ4.1
#=GS A5B612_VITVI/105-211    AC A5B612.1
#=GS A3BDQ6_ORYSJ/53-162     AC A3BDQ6.1
#=GS Q9XEC0_ARATH/101-218    AC Q9XEC0.1
#=GS Q9XEB1_ARATH/96-179     AC Q9XEB1.1
#=GS C7IZC8_ORYSJ/512-617    AC C7IZC8.1
#=GS A5BTC5_VITVI/73-191     AC A5BTC5.1
#=GS C0PCZ1_MAIZE/115-226    AC C0PCZ1.1
#=GS B9HBI0_POPTR/4-121      AC B9HBI0.1
#=GS A9NW64_PICSI/1-55       AC A9NW64.1
#=GS Q4P5J7_USTMA/74-155     AC Q4P5J7.1
#=GS A5AQ94_VITVI/79-192     AC A5AQ94.1
#=GS D8U451_VOLCA/25-142     AC D8U451.1
#=GS F2UTC5_SALS5/181-290    AC F2UTC5.1
#=GS B8BH64_ORYSI/219-332    AC B8BH64.1
#=GS B9P966_POPTR/78-191     AC B9P966.1
#=GS I1QU64_ORYGL/47-164     AC I1QU64.1
#=GS F2UTF6_SALS5/182-291    AC F2UTF6.1
#=GS A5C9P2_VITVI/8-120      AC A5C9P2.1
#=GS A5BZM8_VITVI/93-173     AC A5BZM8.1
#=GS G7L7N7_MEDTR/35-147     AC G7L7N7.1
#=GS Q7F814_ORYSJ/95-213     AC Q7F814.1
#=GS C5YED5_SORBI/80-190     AC C5YED5.1
#=GS B9MZX7_POPTR/111-224    AC B9MZX7.1
#=GS B9SD74_RICCO/28-101     AC B9SD74.1
#=GS F2UPN1_SALS5/175-284    AC F2UPN1.1
#=GS B9FIH1_ORYSJ/361-479    AC B9FIH1.1
#=GS C5YC64_SORBI/357-456    AC C5YC64.1
#=GS A5B2E2_VITVI/53-156     AC A5B2E2.1
#=GS Q75IL9_ORYSJ/113-231    AC Q75IL9.1
#=GS A5C3Q8_VITVI/90-208     AC A5C3Q8.1
#=GS Q6L3Y5_SOLDE/89-207     AC Q6L3Y5.2
#=GS G7ISV3_MEDTR/21-79      AC G7ISV3.1
#=GS B9HKW4_POPTR/105-223    AC B9HKW4.1
#=GS A5AV98_VITVI/100-213    AC A5AV98.1
#=GS Q7XWP2_ORYSJ/116-231    AC Q7XWP2.2
#=GS A5B9X9_VITVI/89-207     AC A5B9X9.1
#=GS A5BBM9_VITVI/89-207     AC A5BBM9.1
#=GS A5AJF0_VITVI/9-110      AC A5AJF0.1
#=GS Q7XW15_ORYSJ/86-209     AC Q7XW15.2
#=GS A5BW11_VITVI/73-191     AC A5BW11.1
#=GS F6H894_VITVI/20-132     AC F6H894.1
#=GS A5AGA6_VITVI/30-93      AC A5AGA6.1
#=GS Q4P9M9_USTMA/109-191    AC Q4P9M9.1
#=GS Q2QLU6_ORYSJ/112-217    AC Q2QLU6.1
#=GS A5AJH0_VITVI/53-171     AC A5AJH0.1
#=GS Q9ZT25_MAIZE/93-207     AC Q9ZT25.1
#=GS A5BZ55_VITVI/79-151     AC A5BZ55.1
#=GS G7KIU8_MEDTR/100-218    AC G7KIU8.1
#=GS Q4P352_USTMA/110-191    AC Q4P352.1
#=GS Q10SZ0_ORYSJ/85-203     AC Q10SZ0.1
#=GS F2UDI7_SALS5/99-211     AC F2UDI7.1
#=GS A2ZAJ3_ORYSI/82-190     AC A2ZAJ3.1
#=GS A5BS59_VITVI/1-49       AC A5BS59.1
#=GS Q2QQ28_ORYSJ/174-286    AC Q2QQ28.2
#=GS A5BSC1_VITVI/9-120      AC A5BSC1.1
#=GS B7EGJ8_ORYSJ/1-106      AC B7EGJ8.1
#=GS Q01L83_ORYSA/191-302    AC Q01L83.1
#=GS D3IVP8_9POAL/630-749    AC D3IVP8.1
#=GS A5BDP2_VITVI/111-229    AC A5BDP2.1
#=GS E3K979_PUCGT/109-220    AC E3K979.1
#=GS Q10PG0_ORYSJ/85-203     AC Q10PG0.1
#=GS A5BIE8_VITVI/1-68       AC A5BIE8.1
#=GS A5BMR0_VITVI/291-409    AC A5BMR0.1
#=GS Q2QUP7_ORYSJ/507-625    AC Q2QUP7.1
#=GS A5AFZ5_VITVI/97-210     AC A5AFZ5.1
#=GS Q60DN3_ORYSJ/103-215    AC Q60DN3.1
#=GS E5GBM9_CUCME/1-83       AC E5GBM9.1
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