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Database: Pfam
Entry: VirD1
LinkDB: VirD1
Original site: VirD1 
#=GF ID   VirD1
#=GF AC   PF07328.15
#=GF DE   T-DNA border endonuclease VirD1
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_19558 (release 10.0)
#=GF GA   28.20 28.20;
#=GF TC   28.80 28.40;
#=GF NC   26.80 26.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF CL   CL0057
#=GF RN   [1]
#=GF RM   9689041
#=GF RT   Interaction of the DNA modifying proteins VirD1 and VirD2 of
#=GF RT   Agrobacterium tumefaciens: analysis by subcellular localization
#=GF RT   in mammalian cells. 
#=GF RA   Relic B, Andjelkovic M, Rossi L, Nagamine Y, Hohn B; 
#=GF RL   Proc Natl Acad Sci U S A 1998;95:9105-9110.
#=GF DR   INTERPRO; IPR009933;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of several T-DNA border endonuclease VirD1
#=GF CC   proteins which appear to be found exclusively in Agrobacterium
#=GF CC   species. Agrobacterium, a plant pathogen, is capable to stably
#=GF CC   transform the plant cell with a segment of its own DNA called
#=GF CC   T-DNA (transferred DNA). This process depends, among others, on
#=GF CC   the specialised bacterial virulence proteins VirD1 and VirD2
#=GF CC   that excise the T-DNA from its adjacent sequences. VirD1 is
#=GF CC   thought to interact with VirD2 in this process [1].
#=GF SQ   27
#=GS A0A2M9PFQ9_9RHOB/9-140   AC A0A2M9PFQ9.1
#=GS A0A386E844_9HYPH/5-146   AC A0A386E844.1
#=GS A0A8B2NP64_9HYPH/84-215  AC A0A8B2NP64.1
#=GS A0A1H3FTG0_9RHOB/19-144  AC A0A1H3FTG0.1
#=GS B9K404_AGRVS/4-145       AC B9K404.1
#=GS A0A840SUW3_9RHOB/40-170  AC A0A840SUW3.1
#=GS A0A8B2NC22_9HYPH/26-155  AC A0A8B2NC22.1
#=GS E2CSL2_9HYPH/9-141       AC E2CSL2.1
#=GS A0A086XUJ2_9RHOB/10-140  AC A0A086XUJ2.1
#=GS A0A840SZH0_9RHOB/37-167  AC A0A840SZH0.1
#=GS A0A501WIG6_9RHOB/11-139  AC A0A501WIG6.1
#=GS A0A8B2NEJ4_9HYPH/17-155  AC A0A8B2NEJ4.1
#=GS A0A2M9PD75_9RHOB/10-140  AC A0A2M9PD75.1
#=GS Q07GJ2_ROSDO/14-76       AC Q07GJ2.1
#=GS A0A1M7JX99_9RHOB/15-146  AC A0A1M7JX99.1
#=GS A0A1X0T3I2_9HYPH/15-140  AC A0A1X0T3I2.1
#=GS A0A8B2NM05_9HYPH/17-155  AC A0A8B2NM05.1
#=GS A0A1M7PHW7_9HYPH/3-145   AC A0A1M7PHW7.1
#=GS A0A2W4B5I0_9HYPH/5-146   AC A0A2W4B5I0.1
#=GS A0A0N0E723_9HYPH/28-164  AC A0A0N0E723.1
#=GS A0A2W7N2B9_9RHOB/29-154  AC A0A2W7N2B9.1
#=GS VIRD1_AGRFC/5-146        AC P18591.1
#=GS A0A2W4BQ93_9HYPH/5-146   AC A0A2W4BQ93.1
#=GS A0A5N7MQD1_9HYPH/12-150  AC A0A5N7MQD1.1
#=GS A0A1G9MR39_9RHOB/45-179  AC A0A1G9MR39.1
#=GS Q2K2F6_RHIEC/4-145       AC Q2K2F6.1
#=GS A0A8B2NJ34_9HYPH/23-155  AC A0A8B2NJ34.1
A0A2M9PFQ9_9RHOB/9-140              .....................peaakreprad--------------.-------KTLSVRLTEAELAEFDAQIAGL....GL.NRNRALRIAARRIGGFLEVD...AAVVEALRDINRQLAGVA...TNVNQIAH.AANRTHDPDYRVFLAQR.AELGRLLIETRGALQHILDLGARREDGLARL---tva...............
A0A386E844_9HYPH/5-146              ................................SRPTSSDIAVNQRE.CVKVEGFKVVSTRLRSAEYESFSHQARLL....GL.SDSMAIRVAVRRIGGFLEID...AETRHRMEAILQSIGTLS...SNIAALLS.AYAENPTMDLEALRAER.IAFGKSFADLDGLLRSILSVSRRRIDGCSLLKDA..................
A0A8B2NP64_9HYPH/84-215             areswsemrlirrpeassiraalwtsvtywsv--------------.--------------RIASWYSI--TERLVgmtaGL.KRNCALGIAARRIDEFLEAD...AETLSVLKDLQGQIAGIA...RNVNQIVK.TANRIHDADNRAVLKER.RDLGKVLSRLDT----------------------eppstt............
A0A1H3FTG0_9RHOB/19-144             ..........................sgradr--------------.--------TISIRLTEAELAELDARIAPL....GL.KRNRALRIAARRIGGFVEAD...PA---ELEALKHAAAQLSgvaRNINQIAR.VANRTGDPHLAAFLEER.RDLGKELSRLAAQLRRMMDLAQRREDGLRRLEE-a.................
B9K404_AGRVS/4-145                  ..............................sa--KSPSDNIVDRRE.GSTIEGFKVVSTRLRSAEYESFSRQARRL....GL.SDSMAIRIAVRRIAGFLEID...AETRHEMEAILHSIGTLS...NNIAALLN.SYAENPTTDLGALQAER.NAFGKAFADLDGLLRSILSVSRRRIDGCSMLADA..................
A0A840SUW3_9RHOB/40-170             ......................eaakkeprad--------------.-------RTISVRLTEAELAELDAQISGL....SL.NRNRALRIAARRIGGFLEVD...GATVEALRTINRQLAGVA...TNINQIAH.SANRTHDPDYRAFMAQR.AELGRVLIETRGALQRILDLGARREDGLARLKA-a.................
A0A8B2NC22_9HYPH/26-155             .......................ssptrerae--------------.-------KTISVKMTEAELAAFDAAIAGA....GL.KRNRALRIAARRIGGFLEAD...AETLAVLKDLQAQIAGIA...RNVNQIAK.AANRTHDPDYRAFLEER.RDLGKALSRLDTELRAITETATRRTDGETRLR--ra................
E2CSL2_9HYPH/9-141                  .....................eggkealsdtd--------------.------WVVISVRMRRAEVAALDALCEEV....GA.KRNRVLRVLVLHARGFLDYD...NEVRATLRDLLRQVGGIA...TNINQIAK.AANVTGKPEYERFFEER.KSFGKLFARVETQIQILLNLKTRKADAEGLLRK-a.................
A0A086XUJ2_9RHOB/10-140             ........................aavvskat--------------.-----VNKTISVRLTEAELADFDAQIDAL....GI.NRNRALRIMARQVGGFLEED...AASVAHLADISRQLRGIA...VNVNQIAK.AANRTTDPDFIAFMEER.QRLGKELSRVQSYLQALFDIDKRRSDGAERLKKA..................
A0A840SZH0_9RHOB/37-167             ......................eaakkeprad--------------.-------RTISIRLTEAELAEFDAQIAGL....GL.NRNRALRIAARRIGGFLEVD...GETVEALRSINRQLAGVA...TNINQIAH.SANRTHDPDYRAFMAQR.AELGRILIETRGALQRILDLGARREDGLGRLKA-a.................
A0A501WIG6_9RHOB/11-139             ........................arkaprad--------------.-------KLLSVRVTEAELAELDAQIAVL....GI.RRNRALRIAARRIGGFLETD...AGVVAELRALNRQIAGVA...TNVNQIAH.AANRTHDPDYRAFLAER.AELGRVLIEVRGLLQRMLDLGARREDGLARLR--aa................
A0A8B2NEJ4_9HYPH/17-155             ..............ssgswttdasnpapkrae--------------.-------KTVSVKMTEVELVAFDTAIAQV....GL.KRNRALRIAARRIGGFLEGD...AETLAVLKDLQAQIAGIA...RNVNQIAK.SANRTHDPDYRAFMEER.RDLGKALSRLDTELRTFTETATRRTDGEARLR--ka................
A0A2M9PD75_9RHOB/10-140             ......................eaakkeprad--------------.-------RTISIRLTEAELAELDAQISGL....GL.NRNRALRIAARRIGGFLEVD...GATVEALRAINRQLAGVA...TNINQIAH.SANRTHDPDYQRFMAQR.AELGRIMIETRGALQRILDLGARREDGLERLN--aa................
Q07GJ2_ROSDO/14-76                  .........................agparvd--------------.-------KVISVKMTEAELAEFDAQIAEL....GL.NRNRALRIAARRIGGFVEND...AKTV--------------...--------.-----------------.----------------------------------ellrdmsr..........
A0A1M7JX99_9RHOB/15-146             .........................vaavkqs--------EVRTRD.SATTEG-KPVSARLSPAELESLEWLKARF....GFgSNSDALRALVRSASGMLEFDpvtAEKLTEVKAELHKIGVNV...NQIALAANkGRIDLARQEWKALNAVR.RAL-------------------------------pgvriylqavvdeqrrrg
A0A1X0T3I2_9HYPH/15-140             .........................pepadrt--------------.---------VPVKMTASELAEFDATIAPL....GL.KRNRALRIAARRIGGFLEAD...PETLAAIRDIQAQITGIA...RNVNQIAK.AANRTHDPDYRAFMEER.RELGKALARLERHLLKITITAARRDDGKV-----rlcra.............
A0A8B2NM05_9HYPH/17-155             ...................sggswtsdasssa--------------.--TNRAEKIVSVKMTEAELTAFDEAIARA....GL.KRNRALRIAARRIGGFLEAD...AETLAVLKDVQAQIAGIA...RNVNQIAK.SANRTHDPDYRAFMEER.RDLGKALSRLDTELRTITETATRRTDGEARLR--ka................
A0A1M7PHW7_9HYPH/3-145              ..........................crtdtk------NQRVDERDsGSPDDVWTVFSVRMRVSEAAELDALCAEL....GV.KRNRVLRTLVLKANGFLDYD...KETTDVLRNLTRQVSGIA...TNINQLAK.QANKTGEPDFIAFMEDR.KGLGGLFAKVEAQVQILLNVRKRKAAAKALLEK-a.................
A0A2W4B5I0_9HYPH/5-146              ...............................s-EPASTGIVIKQRE.RVKVAGFKVVSTRLRSAEYKSFSQQARLL....GL.SDSMAIRVAVRRIGGFLEID...THTRHRMELLLQSIGTLS...GNIAALLS.AYAENPTMDLEALRAER.IAFGKSFADLDGLLRSILSVSRRRIDGCSLLKDA..................
A0A0N0E723_9HYPH/28-164             ..................rrlskkvaptddki--------------.-----GFATVSVKLRPVEKEAFKNTCDEL....GL.TPNKAMRIMARHTAGFLELS...NRSADNLELVTKQIIGVS...RNINQIAK.AANRTGSPDYIAFMEDR.EELGKELRQLQRVLQNITNVTRRRSDGLTTLKEA..................
A0A2W7N2B9_9RHOB/29-154             .........................paqradr--------------.--------TIAVRVTEAELAEFDTQIARL....GI.KRNRALRIAMRRIGGFVEAD...PMQVEALRDVARQLVGVA...RNINQIAK.SANRTRDPDYRAFMEER.AALGKVLVQVQGQTQTILDLAARREDGLARL---dr................
VIRD1_AGRFC/5-146                   ................................SRPTSSDIAVNQRE.CVKVEGFKVVSTRLRSAEYESFSHQARLL....GL.SDSMAIRVAVRRIGGFLEID...AETRHRMEAILQSIGTLS...SNIAALLS.AYAENPTMDLEALRAER.IAFGKSFADLDGLLRSILSVSRRRIDGCSLLKDA..................
A0A2W4BQ93_9HYPH/5-146              ................................SKPTSSDIAINQRV.GATVEGFRVVSTRLRSAEYESFSHQARLL....GL.SDSMAIRVAVRRIGGFLEID...AETRHKMEAILLSIGTLS...SNIAALLS.AYAENPTMDLEALRAER.IAFGESFADLDGLLRSILSVSRRRIDGCSMLKD-s.................
A0A5N7MQD1_9HYPH/12-150             ...................napirgsrraava--------------.--DPNGYKIISVRLRLAEFESFSEQSRAF....GL.TSNLALRIAVRRIAGFLEID...AETRQNLQEITNSIGQIA...ETLTDMSR.IASRDGAVDMDRFERHR.QQFGQEFAALDALLRTILNVSRRRRDGRRLLQEA..................
A0A1G9MR39_9RHOB/45-179             .........................akvrqhe---------VRSRD.SATTDG-KPVSARLTPAEIEQLEWLKARF....GYgSNSDAIRALVRAASGMLEFDpvaAEKLDEVRGELRKIGVNV...NQIALAS-.---NRGRIDLARHEWQAvDELRRAFPRVEGYLRAVVNEQRRR----------gtrlf.............
Q2K2F6_RHIEC/4-145                  ................................AKPAPYDTATDQHN.RVCIDGFKVVSTRLRSAEYETFSHQARSL....GL.SDSMAMRVAVRRIGGFLEID...EKTRGKMEGILLSMGTLS...GNIAALLS.AYADNPRPDLEALRAER.IAFGKAFADLDGLLRSILSVSRRRIDGCAMLKD-t.................
A0A8B2NJ34_9HYPH/23-155             ....................sdasnpapkrae--------------.-------KTVSVKMTEAELAAFDEAIARA....GL.KRNRALRIAARRIGGFLEAD...AETLAVLKDLQAQIAGIA...RNVNQIAK.SANRTHDPDYRAFMEER.RDLGKALSRLDTELRTITETATRRTDGEARLR--ka................
#=GC seq_cons                       ..........................t..psp......................+slSlRlppAEltpF-tphstL....GL.pRN+ALRIAsRRIGGFLEhD...ucThttLcsltppluslu...pNlNQlA+.uAN+stcPDhcAFhtER.tpLG+hhuclcu.LppIhslupRRtDGhshLc..t.................
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