GenomeNet

Database: Pfam
Entry: Viral_coat
LinkDB: Viral_coat
Original site: Viral_coat 
#=GF ID   Viral_coat
#=GF AC   PF00729.15
#=GF DE   Viral coat protein (S domain)
#=GF AU   Bateman A, Griffiths-Jones SR
#=GF SE   Pfam-B_870 (release 2.1)
#=GF GA   23.00 23.00;
#=GF TC   62.00 61.60;
#=GF NC   22.20 20.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF DR   INTERPRO; IPR000937;
#=GF DR   SCOP; 2tbv; fa;
#=GF DR   PROSITE; PDOC00480;
#=GF DR   HOMSTRAD; bv;
#=GF SQ   14
#=GS CAPSD_RCNMV/24-213   AC P22955.1
#=GS CAPSD_OCSVU/110-309  AC Q83928.1
#=GS CAPSD_PNLV/47-266    AC Q5NDM8.1
#=GS O12304_GAMV/33-223   AC O12304.1
#=GS CAPSD_CARMS/51-245   AC Q9Q6X7.1
#=GS Q9E350_MNESV/40-253  AC Q9E350.1
#=GS CAPSD_SBMVA/46-262   AC O72158.1
#=GS CAPSD_CFMVN/65-250   AC Q66012.1
#=GS CAPSD_PMVK/34-237    AC P89036.1
#=GS D3U5B8_FNSVC/29-223  AC D3U5B8.1
#=GS CAPSD_MCMVK/23-223   AC P11642.1
#=GS CAPSD_TBSVC/76-269   AC P11689.1
#=GS CAPSD_POLVP/65-257   AC Q9QBU3.1
#=GS CAPSD_TNVA/61-272    AC P22959.1
CAPSD_RCNMV/24-213              ..............v-KTVAIPFAKTQII.KTVNP---.....PPKPARGILHTQLVMSVVGSVQ.--..-MRTNNGKSNQ...RFRLNPSNPALFPTLAYEAANYDMYRLKKLTLRYVPLVTVQNSGRVAMIWDPDSQDSAPQSRQEI.SAYSRSVSTAVYEKC-----------.........SLTIPADNQWRFVADNTTVDRKLVDF..........GQLLFVT...HSGSDGI.ETG......DIFLDCEVEFKGPQPT..
CAPSD_OCSVU/110-309             ..............g-GTTAAPVSISRNInRRSKPSIK.....MMGDAVVISHSEMLGAINSGTPsSNvtAFRCTG-----...-YRANPGMSTIFPWLSATAVNYEKYKFRRLSFTLVPLVSTNYSGRIGVGFDYDSSDLVPGNRQEF.YALSNHCENMPWQES-----------.........TVEIKCDNAYRFTGTHVAADNKLIDL..........GQVVVMS...DSVSNGG.TISaalplfDLIVNYTVELIEPQQ-a.
CAPSD_PNLV/47-266               ..............g-RVVTAPVSSAALI.RYKAPSLN....gNSMDSVRLASKSLVIE------.--..AVKVGIEYQVS...VVPLVP--CIQHTWLSGVACYWSKYRWRSCRLVYIPYCSSSFTGYVSMGLSYDYADAIPSDETEM.SALKGYTTTSAWAGSEGIKMLSYPTGavpsgavvlSLDCASMSKPWYPYISAVAATNLGEKqpellnqytpARAFIGTgggMQGVNGL.TAG......RVFMVYDIELIEPVS-p.
O12304_GAMV/33-223              ...........qdqs-----APVAISRQV.RGSVPKLA.....-GNRPFTFGHRELIATISNTVL.--..-FQVNGGVGGN...LYRLNPANSSLFTWLPSISANFDQYRFLKVWLEYAPFCSTTEAGRVGLYFDKDSQDPEPTDRVEL.ANFGHLSETVAWSPI-----------.........ELHLPTDNVVRYMSDSSVSDPKLIDL..........GQIGFAT...YGGGSTN.AIG......DLFIHYTIELQQPQPT..
CAPSD_CARMS/51-245              ..............t-PAILAFTPRRPRM.TNSPPRTSrnspgQAGKSMTMSKTELLCTVKGTTG.--..---VIP--SFE...DWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTPPTTKVGF.YDLGKHVETAAQTAK-----------.........DLVIPVDGKTRFIRDSASDDAKLVDF..........GRLVLSTy.gFDKADTV.-VG......ELFIQYTIVLSDPTKT..
Q9E350_MNESV/40-253             .............ss--VVTAPVVGSAII.RSRVPKVL.....NSREGVVVSNTERFSI--LTTA.--..-VGVAT---FS...RIDITPSNV---LWLNGVAINYSKYRWISVQMYYIPIVPTTQTGLMAMGFVYDVNDSMTGTTVGMvQQMYGAVSGPIWAGYEGGSGLNTPGTkvptgalciTLDTGRLDKSYYKYATVAQIGAMSGPeaa...myvpASVVWAT...DSAAVAQgGAG......QIMAKYTVELLEPIP-a.
CAPSD_SBMVA/46-262              ..............a-GVSMAPIAQGTMV.RLREPSLR.....TAGGVTVLTHSELSTE------.--..-LSVTNAIVIT...SELVMP--YTMGTWLRGVAANWSKYSLLSVRYTYLPSCPSTTSGSIHMGFQYDMADTLPVSVNQL.SNLRGYVSGQVWSGSSGLCYINGTRCldtanaittTLDVGQLGKKWYPFKTSTDFTTAVGVnvniatplvpARLIIAMl.dGSSSTAV.STG......RLYVSYTIQLIEPTA-l.
CAPSD_CFMVN/65-250              fdtgmitsylggfqr--------------.--------.....----------------------.--..---TAGTTDSQ...VFIVSP---AALDRVGTIAKAYALWRPKHWEIVYLPRCSTQTDGSIEMGFLLDYADSVPTNTRTM.ASSTSFTTSNVWGGGDGSSLLHTSVKsmgn.avtsALPCDEFSNKWFKLSWSTPEESENAHltd...tyvpARFVVRS..dFPVVTAD.QPG......HLWLRSRILLKGSVS-p.
CAPSD_PMVK/34-237               ......stplqyvtt-------------L.GPSRPRMG.....QGQGWQKLSHEEIILQVNSSTAaDTiqTIPIIPRLSVP...A-GDKPIYSGSAPHLRTIGSAFAIHRWRALSFEWIPSCPTTTPGNLVLRFYPNYSTETPKTLTDL.MDSESLVLVPSLSGKTYRPKIETRGN.........PPELRNIDATAFSAL-SDEDKGDYSV..........GRLVVGS...SKQAVVI.QLG......LLRMRYSAEMRGATS-i.
D3U5B8_FNSVC/29-223             .............lk---VTAPVAMSRLM.VSRTPKFS.....SRSNNITVSHCELVANVTNTTG.--..VLQINNAITSSiggVYKVNP-AQGLFAWLSTLAANFDTYRFDKLIFRYVPMCATTETGRVVMMWDKDSEDPPPNDRFAI.SSYQHHCSFPCWGEG-----------.........PLTIPVDGVKRFINDEAVVDRKLIDF..........GQFMFGV...YGGSSTN.SIG......DIYVDYTVTLMEAQPT..
CAPSD_MCMVK/23-223              ..............r-AIRANPPVPRPNPqRNRPPPAG.....-----TTCSMSEILLAVSATTA.DQilEIPVCAGIDFP...A-GTSPRYIGAAKWLAAQSQMWNTIVFNSVRITWETFTADTTSGYISMAFLSDYMLSIP---TGV.EDVARIVPSATIALKNRGPSIVMPQN.........RTVFRCIQAGQFAALGSAADKQMYSP..........GRFIVAI...PKASATQ.AVG......QIKISYSVSYRGAA--il
CAPSD_TBSVC/76-269              ..............g-GAIMAPVAVTRQL.VGSKPKFT....gRTSGSVTVTHREYLSQVNNSTG.--..-FQVNGGIVGN...LLQLNPLNGTLFSWLPAIASNFDQYTFNSVVLHYVPLCSTTEVGRVAIYFDKDSEDPEPADRVEL.ANYSVLKETAPWAEA-----------.........MLRVPTDKIKRFCDDSSTSDHKLIDL..........GQLGIAT...YGGAGTN.AVG......DIFISYSVTLYFPQPT..
CAPSD_POLVP/65-257              ..............p-GAIAAPVANTRII.RASKPKFT.....RSKGSVTIAHRELLGQFNNSSG.--..-LVVNGGVSGN...LYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVEL.ANMGHWTESAPWCES-----------.........TLNVPVDNVKRFMNDNTTTDRKLVDL..........GQIGLAT...YGGGSTN.PVG......DLFIHYTITLFEPQP-l.
CAPSD_TNVA/61-272               ..............g-GYIVAPTSGGVVT.RPIVPKFS.....NRGDSTIVRNTEILNN------.QIlaALGAFNTTNSA...LIAAAP------SWLASIADLYSKYRWLSCEIIYIPKCPTTTSGSIAMAFTYDRNDAAPTARAQL.SQSYKAINFPPYAGYDGAAYLNSNQGags..aiavQLDVTKLDKPWYPTISSAGFGALSVLdqn...qfcpASLVVAS..dGGPATAT.PAG......DLFIKYVIEFIEPIN-p.
#=GC seq_cons                   ..............s..hhhAPsu.st.l.+sphPphs.....pstsshslu+pEllsph.sos.......htlssshsss...hhtlsP..sshhsWLsulAssaspYRapplplpYlPhCuTTpoGpluhtFshD.pDshPsscspl.ushtphspsssWutt....................sLslss.stttFhsssossDppLhsh..........Gpllluo...huuusss.ssG......clalpYolpLhpPps...
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