#=GF ID   YjcQ
#=GF AC   PF09639.5
#=GF DE   YjcQ protein
#=GF AU   Coggill P
#=GF SE   pdb_2hgc
#=GF GA   21.80 21.80;
#=GF TC   22.20 22.10;
#=GF NC   21.70 21.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   15033535
#=GF RT   Systematic analysis of SigD-regulated genes in Bacillus subtilis
#=GF RT   by DNA microarray and Northern blotting analyses. 
#=GF RA   Serizawa M, Yamamoto H, Yamaguchi H, Fujita Y, Kobayashi K,
#=GF RA   Ogasawara N, Sekiguchi J; 
#=GF RL   Gene. 2004;329:125-136.
#=GF RN   [2]
#=GF RM   15016546
#=GF RT   The prophages of Lactobacillus johnsonii NCC 533: comparative
#=GF RT   genomics and transcription analysis. 
#=GF RA   Ventura M, Canchaya C, Pridmore RD, Brussow H; 
#=GF RL   Virology. 2004;320:229-242.
#=GF DR   INTERPRO; IPR018597;
#=GF CC   YjcQ is a protein of approx. 100 residues containing four alpha
#=GF CC   helices and three beta strands. It is expressed in bacteria and
#=GF CC   also in viruses. It appears to be under the regulation of SigD
#=GF CC   RNA polymerase which is responsible for the expression of many
#=GF CC   genes encoding cell-surface proteins related to flagellar
#=GF CC   assembly, motility, chemotaxis and autolysis in the late
#=GF CC   exponential growth phase. The exact function of YjcQ is unknown
#=GF CC   [1]. However, it is thought to be a prophage head protein in
#=GF CC   viruses [2].
#=GF SQ   83
#=GS F1YZ94_9STRE/7-91    AC F1YZ94.1
#=GS F7V708_CLOSS/1-61    AC F7V708.1
#=GS G4L0W5_OSCVS/9-97    AC G4L0W5.1
#=GS E5XGT7_9FIRM/10-109  AC E5XGT7.1
#=GS D2RJS3_ACIFV/2-84    AC D2RJS3.1
#=GS H7DJZ5_9CLOT/10-112  AC H7DJZ5.1
#=GS F7V711_CLOSS/2-86    AC F7V711.1
#=GS E6LTS5_9LACO/10-108  AC E6LTS5.1
#=GS F3AXS9_9FIRM/10-109  AC F3AXS9.1
#=GS Q3ESW8_BACTI/4-86    AC Q3ESW8.1
#=GS D4RV24_ENTFC/7-91    AC D4RV24.1
#=GS C9CGH5_ENTFC/7-91    AC C9CGH5.1
#=GS G1WGI6_9ACTN/10-107  AC G1WGI6.1
#=GS F4LSP5_TEPAE/7-106   AC F4LSP5.1
#=GS Q3EQQ6_BACTI/4-86    AC Q3EQQ6.1
#=GS H7DQ04_9CLOT/12-114  AC H7DQ04.1
#=GS D3MSU1_9FIRM/7-104   AC D3MSU1.1
#=GS E4KQ92_9LACT/10-97   AC E4KQ92.1
#=GS F3M0Z4_9LACO/10-108  AC F3M0Z4.1
#=GS C7GYV1_9FIRM/10-108  AC C7GYV1.1
#=GS C7Y5Z9_9LACO/10-109  AC C7Y5Z9.1
#=GS C3EUK3_BACTK/4-86    AC C3EUK3.1
#=GS E1NH53_9LACO/14-112  AC E1NH53.1
#=GS Q7P5S3_FUSNV/5-103   AC Q7P5S3.1
#=GS C3IEB1_BACTU/17-99   AC C3IEB1.1
#=GS G9WTM0_9FIRM/7-99    AC G9WTM0.1
#=GS Q65PQ3_LACJO/10-108  AC Q65PQ3.1
#=GS F7V702_CLOSS/10-98   AC F7V702.1
#=GS D4RKI8_ENTFC/9-98    AC D4RKI8.1
#=GS C2SU83_BACCE/4-86    AC C2SU83.1
#=GS F0TIL2_LACA3/21-120  AC F0TIL2.1
#=GS H1C950_9FIRM/10-103  AC H1C950.1
#=GS D0DHV6_9LACO/10-109  AC D0DHV6.1
#=GS C0WWS3_LACFE/10-75   AC C0WWS3.1
#=GS G2G362_9CLOT/13-115  AC G2G362.1
#=GS G2IAS0_9CLOT/13-115  AC G2IAS0.1
#=GS E5BHZ7_9FUSO/8-106   AC E5BHZ7.1
#=GS Q6SED4_9CAUD/10-108  AC Q6SED4.1
#=GS E0E3V7_9FIRM/7-101   AC E0E3V7.1
#=GS E7FP13_9LACO/10-102  AC E7FP13.1
#=GS E3C0I7_9LACO/14-112  AC E3C0I7.1
#=GS C0CPP8_9FIRM/15-113  AC C0CPP8.1
#=GS Q5FM49_LACAC/21-120  AC Q5FM49.1
#=GS D3MST8_9FIRM/7-104   AC D3MST8.1
#=GS G6FEF7_LACLC/10-108  AC G6FEF7.1
#=GS A7FXR1_CLOB1/8-102   AC A7FXR1.1
#=GS Q9AYW8_BPTU2/10-108  AC Q9AYW8.1
#=GS C2KWG9_9FIRM/7-103   AC C2KWG9.1
#=GS D0DUI4_LACFE/10-106  AC D0DUI4.1
#=GS B2A5C4_NATTJ/10-108  AC B2A5C4.1
#=GS C7UYS8_ENTFL/7-91    AC C7UYS8.1
#=GS E3C2V5_9LACO/14-112  AC E3C2V5.1
#=GS C2HME0_LACAI/21-120  AC C2HME0.1
#=GS YJCQ_BACSU/7-94      AC O31639.1
#=GS YJCQ_BACSU/7-94      DR PDB; 2HGC A; 7-82;
#=GS H7D3V5_9CLOT/10-112  AC H7D3V5.1
#=GS C3IVP7_BACTU/4-86    AC C3IVP7.1
#=GS F5VGH4_9LACO/1-77    AC F5VGH4.1
#=GS F9VIQ3_ARTSS/10-112  AC F9VIQ3.1
#=GS C9BRV5_ENTFC/7-91    AC C9BRV5.1
#=GS E3BTM4_9LACO/10-108  AC E3BTM4.1
#=GS F7JDB3_9FIRM/10-109  AC F7JDB3.1
#=GS C8PDE3_9LACO/10-108  AC C8PDE3.1
#=GS C7UBU3_ENTFL/7-91    AC C7UBU3.1
#=GS H7D980_9CLOT/10-112  AC H7D980.1
#=GS F7UWJ1_EEGSY/10-109  AC F7UWJ1.1
#=GS B1QIV0_CLOBO/10-108  AC B1QIV0.1
#=GS C2EIL3_9LACO/5-37    AC C2EIL3.1
#=GS H1AKF5_9FIRM/17-98   AC H1AKF5.1
#=GS D0AQZ2_ENTFC/9-98    AC D0AQZ2.1
#=GS H3RPR1_9LACO/1-59    AC H3RPR1.1
#=GS B1BLY6_CLOPF/11-102  AC B1BLY6.1
#=GS C4F8C8_9ACTN/10-108  AC C4F8C8.1
#=GS G2FW86_9FIRM/5-88    AC G2FW86.1
#=GS H7D5G6_9CLOT/10-112  AC H7D5G6.1
#=GS H0USU6_9VIRU/17-99   AC H0USU6.1
#=GS E0NZJ0_9FIRM/7-104   AC E0NZJ0.1
#=GS H7FAD4_9CLOT/10-112  AC H7FAD4.1
#=GS C7MPB3_CRYCD/10-102  AC C7MPB3.1
#=GS G9YWE1_9FIRM/10-103  AC G9YWE1.1
#=GS F5VG86_9LACO/10-105  AC F5VG86.1
#=GS B8I8U0_CLOCE/10-96   AC B8I8U0.1
#=GS F7V714_CLOSS/19-117  AC F7V714.1
#=GS H7DCS8_9CLOT/10-112  AC H7DCS8.1
F1YZ94_9STRE/7-91               ........RYAILKLRDE.K..K..NPFIEL.KG..Q.VPE..........EDILEQTKFLSRNGLLESMVWADN........TVHI.W.G.S---VSL...EGEKYLVENSGLAKAYALAKEVKNWIP..........
F7V708_CLOSS/1-61               ......mi----------.-..-..------.--..-.---..........--------TMIDQGFISGIEYTPTk.....dgILFS.N.L.ENALITF...NGVEYLFDNSLMQKLKRTLKDVKGIL-p.........
G4L0W5_OSCVS/9-97               .....qls---ILNQMSK.G..K..KPHLEY.YEklG.TTK..........NEFDSAISNMQENHYIE---LNHSnpnvsadsSPSD.G.L.DHSKITF...EGRNYLSKHFEMTAAYRDL--------ee........
E5XGT7_9FIRM/10-109             .......v-YKILSYLYV.K..L..KSGEDT.NP..N.MIThdsqllqinrKYWDYIMRNLIEDGYIT-CET--Ekv...wgkELIY.D.L.KTAEITP...EGIAYVCNNSLIEKAKEFLKDIKE---itp.......
D2RJS3_ACIFV/2-84               ...knfdd----------.-..-..ENFTAS.HF..A.VSD..........ALFLNILQSLIEAGYIGGIKIVTDk......cGSAI.S.L.ISPHLSL...SGMEYLADNTMMKKAYRLLKGIRD---vtp.......
H7DJZ5_9CLOT/10-112             .......v-YKLLSYLYS.C..L..KKGTYV.DI..E.NLRdvik.vdivdSYWNYIILELYKEGYIDGITKIKYig...dinENVK.I.N.KNIRIKP...KGIEFLESNSFVAKAKEFIKEAG----eilfw.....
F7V711_CLOSS/2-86               ........IYRILRYIDI.C..L..KSGKTPtKE..D.ILRdcql.yklseSYADALLEEVSDDGYVKGISIVSTk.....dgGVVI.V.H.DNVRIRL...TGRNYLTE-------------------ven.......
E6LTS5_9LACO/10-108             .......v-FKLLVYFYA.C..L..KRVTVF.KQ..A.EYDlitkkagvdeRYLLDILRMMQDEGLIEGLAFTKAwg...eelILLG.N.V.SDAKITA...EGIHYLQDNGRMKKV------------laflidka..
F3AXS9_9FIRM/10-109             .......v-YKILSYLYV.K..L..KSGEDT.NP..N.MIThdsqllqinrKYWDYIMRNLIEDGYIT-CET--Ekv...wgkELIY.D.L.KTAEITP...EGIAYVCNNSLIEKAKEFLKDIKE---itp.......
Q3ESW8_BACTI/4-86               ........EYKKHETDMF.S..F..ERFQEL.CP..D.ETD..........KSISKALCYLQDEGFV--------........SIYE.A.D.SIAYMTTllsAGIAYCEENTLLKKGYKAAKEIKSWMP..........
D4RV24_ENTFC/7-91               ........RYAILKLRDE.K..K..NPFIEL.KG..Q.VPE..........EDILEQTKFLSRNGLLESMVWADN........TVHI.W.G.S---VSL...EGEKYLVENSGLAKAYALAKEVKNWIP..........
C9CGH5_ENTFC/7-91               ........RYAILKLRDE.K..K..NPFIEL.KG..Q.VPE..........EDILEQTKFLSRNGLLESMVWADN........TVHI.W.G.S---VSL...EGEKYLVENSGLAKAYALAKEVKNWIP..........
G1WGI6_9ACTN/10-107             .......m-YTILKYLYE.C..L..KSGIDP.DP..L.KFSaeal..gineRYWTAIVADLANRGYIRGVVVVHKp......sGDVV.Q.V.VNPSVTI...EGVEFMMENSMMQKALDFVKEAKSAIP..........
F4LSP5_TEPAE/7-106              .......v-YKILQKLD-.-..-..ETLDEN.NP..D.FTDlspeslgiseERRNYILEMMQDAGLIKGVNFIRDgn...nraPIMA.F.L.DNMKITL...KGIEYLAENSSTAKILRAAKEIKDLIP..........
Q3EQQ6_BACTI/4-86               ........EYKNHGTDMF.S..F..ETFKEL.YQ..N.ETD..........DFISKALYRLRDEDLV--------........SVYA.A.D.NVAYNTVllpQGIAYCEENNFLKTGYKFAKEARSWLS..........
H7DQ04_9CLOT/12-114             .......v-YKLLSYLYS.C..L..KKGTYV.DI..E.NLRdvik.vdivdSYWNYIILELYKEGYIDGITKIKYig...dinENVK.I.N.KNIRIKP...KGIEFLESNSFVAKAKEFIKEAG----eilfw.....
D3MSU1_9FIRM/7-104              .......i-YRILKLLEK.S..M..D-LEEF.DP..E.LIGykef..diskPRWSRIMSMLKEQEYIQGIDVWYSld....qdYPRV.K.L.ARPEITL...KGLEYLNENSMTKKVHNAAKGIKE---li........
E4KQ92_9LACT/10-97              .......i-FKVLSYFYN.Q..K..KNGKEI.KE..E.NINaykl..qvnqTYLMDIYKELFEEGYLKGGHVRSYm.....dgSIQLdN.F.EDIRITI...AGVEFLKENNQMKK-------------s.........
F3M0Z4_9LACO/10-108             .......v-FKLLVYFYA.C..L..KRVTVF.KQ..A.EYDlitkkagvdeRYLLDILRMMQDEGLIEGLAFTKAwg...eelILLG.N.V.SDAKITA...EGIHYLQDNGRMKKV------------laflidka..
C7GYV1_9FIRM/10-108             .......v-FKVLTELYT.A..L..RTGERI.EV..TkITDeal...ripqAYWAEIMHNLLDDGYVKGYSVRRYl.....sgTAIT.G.L.EDIQITP...KGIEYLKENNMMRKVFTYLKEIGE---lvp.......
C7Y5Z9_9LACO/10-109             ........SYKILSYLKY.C..Y..ENDKRV.DP..T.ILSegml..sisnNQFLKTLKMLIDQGYIDGVYVKQTld....gmFVLN.N.R.SKAAITM...SGLDYLKNDRSMKEAFEQLGPVQKWLP..........
C3EUK3_BACTK/4-86               ........EYKNHGTDMF.S..F..ETFKEL.YQ..N.ETD..........DFISKALYRLRDEDLV--------........SVYA.A.D.NVAYNTVllpQGIAYCEENNSLKTGYKFAKEARSWLP..........
E1NH53_9LACO/14-112             .......v-FKLLVYFYA.C..L..KRVTVF.KQ..A.EFDlitkkagvdeRYLLDILRMMQDEGLIEGLAFTKAwg...eelILLG.N.V.SDAKITA...EGIHYLQDNGRMKKV------------laflidka..
Q7P5S3_FUSNV/5-103              ........IFQILKAIDV.A..F..ENQDFN.YE..T.TLDlkkl..kiskHRLELFIEELVDKNYIKGLTVRHSi.....ngNPII.S.I.GNPRLTL...DGLDFLENNSSMKKAYKFLKEAKEWIP..........
C3IEB1_BACTU/17-99              ........EYKNHGTDMF.S..F..ETFKEL.YQ..N.ETD..........DFISKALYRLRDEDLV--------........SVYA.A.D.NVAYNTVllpQGIAYCEENNFLKTGYKFAKEARSWLS..........
G9WTM0_9FIRM/7-99               ........IYKILAILHM.S..M..D-FEEW.DK..N.LLShesl..nlsfPKWSRIMSMLLKEGYISGGEMIESve....gfYPRI.K.L.IRPEITL...KGLEYLEENSLMKEAIR----------liqg......
Q65PQ3_LACJO/10-108             ........AYKILSYLKY.C..Y..EEGQNP.DL..D.ILDaptf..kisnNQFYKTLMMLMDDGYIKGLKFTPTk.....tgTIVS.N.M.DRVYITS...DGLQYLEENTMMKKAYKIFKEVRDWLP..........
F7V702_CLOSS/10-98              .......v-YRILSYLYQ.Q..L..KDGTEI.DE..S.KIDehal..niphSYWIYIFDELQSAKYTKGYTIVNVng....grKRLE.H.L.DRAVITL...RGVEYLTSDQLMIK-------------vk........
D4RKI8_ENTFC/9-98               ........RYAILKEIEN.G.nY..ENLDFG.IL..G.ISE..........EQFNDQLNFLKNESYIVGGTYGSN.......vLLPA.T.Y.RFLKLTE...KGEIFLAENSTFSKTYKMAKEIRDWIK..........
C2SU83_BACCE/4-86               ......vh--KKQGVDIF.T..F..EQLKVL.HP..N.ETD..........DFISKAIYTLKNDGFV--------........TVFI.A.E.GRPQRIVllpNGIINCEENTLLKRGYKTLKEIKSWIS..........
F0TIL2_LACA3/21-120             ........AYKILLYLKY.C..Y..ENGTDV.NP..D.VLSpdni..giseKQFVLTLQMLLEDGYIKGVSLKSTiq....gpTIIC.N.I.QNTYATS...SGLQYLVENSMMTKAYKVSKEVRDWIP..........
H1C950_9FIRM/10-103             .....vnk---FLSYLYK.C..L..KQNIAP.DW..N.LLApntkdfpvheEYFTYMLAHLLADGYIEGIAEVRRig....spVQFK.E.T.SGLKITP...AGIEYLEENSTMKR-------------vtefl.....
D0DHV6_9LACO/10-109             ........SYKILSYLKY.C..Y..ENDKRV.DP..T.ILSegml..sisnNQFLKTLKMLIDQGYIDGVYVKQTld....gmFVLN.N.R.SKAAITM...SGLDYLKNDRSMKEAFEQLGPVQKWLP..........
C0WWS3_LACFE/10-75              ........AYKILSYLKY.C..Y..EHGEQP.DP..G.VINertl..liskAQYVETLRMLSDHNYIEGVTFTHT........K---.-.-.-------...---------------------------egvlysfqe.
G2G362_9CLOT/13-115             .......v-YKLLSYLYS.C..L..KKGTYV.DI..E.NLRdvik.vdivdSYWNYIILELYKEGYIDGITKIKYig...dinENVK.I.N.KNIRIKP...KGIEFLESNSFVAKAKEFIKEAG----eilfw.....
G2IAS0_9CLOT/13-115             .......v-YKLLSYLYS.C..L..KKGTYV.DI..E.NLRdvik.vdivdSYWNYIILELYKEGYIDGITKIKYig...dinENVK.I.N.KNIRIKP...KGIEFLESNSFVAKAKEFIKEAG----eilfw.....
E5BHZ7_9FUSO/8-106              ........IYKILRTIDY.C..Y..SKKIMI.KF..D.LEKlg.....lsqHELGLYLHNLVEAGYIGGIIISQAfgq..thfEKYR.A.H.EYAYITL...SGMMFLEENSEMKNFYKTITEIRDWF-c.........
Q6SED4_9CAUD/10-108             ........AYKILSYLKY.C..Y..EEGQNP.DL..D.ILDaptf..kisnNQFYKTLMMLMDDGYIKGLKFTPTk.....tgTIVS.N.M.DRVYITS...DGLQYLEENTMMKKAYKIFKEVRDWLP..........
E0E3V7_9FIRM/7-101              .......v-YKILVGIEA.S..M..DSNRFD.-G..T.FLEalk....iseERRNKILQSMIDDGLIDGFTRVNYa......gGYGF.K.A.LEHRLTI...KGMEFLQENSAMQKIKNGLKDIKD---vtp.......
E7FP13_9LACO/10-102             .......v-FRILVYLYS.V..F..KGKQNF.RQ..N.VFLkevs..rideEYLKRVLAMMSDEGLIEGLHFCRAwg....nvRILV.NdL.ADISITS...DGIHYLLENNRMRK-------------ikefl.....
E3C0I7_9LACO/14-112             .......v-FKLLVYFYA.C..L..KRVTVF.KQ..A.EFDlitkkagvdeRYLLDILRMMQDEGLIEGLAFTKAwg...eelILLG.N.V.SDAKITA...EGIHYLQDNGRMKKV------------laflidka..
C0CPP8_9FIRM/15-113             ........IYCILKELYE.C..M..KQGVNV.NK..E.DISyerf..gipySYWLDIIIQMQEKGFINGVRCRMTk.....gtGRIV.N.Y.DEIGITF...DGVEYLEENSVMKKVRETLKDIKDIV-p.........
Q5FM49_LACAC/21-120             ........AYKILLYLKY.C..Y..ENGIEV.DP..D.ILSseni..giseKQFVLTLQMLLEDGYIKGVSLKPTiq....gpTIIC.N.I.QDTYATS...SGLQYLIENSMMHKAYKVSKEVRDWIP..........
D3MST8_9FIRM/7-104              .......i-YRILKILEK.S..MdlEEFDME.LI..G.YKEld.....iskLRWSRIVSMLKEQEYIQGIDVWYSld....qdYPRV.K.L.VRPEITL...NGLEYLNENSMMKKVYNAAKGIKEL--i.........
G6FEF7_LACLC/10-108             ........SYKILAYLYH.A..M..KKGEKI.DP..G.VFDpqny..rvsyPYLNDILEELKENGYIKGVSFIETk.....dgKLIT.G.L.SDIKITI...KGIEYLDDNSMMKKAYKTLKELKDWIP..........
A7FXR1_CLOB1/8-102              ...kiilk------ALKS.D..E..ENNTNE.FW..D.KMNnvg....cteLMLAQTINYLRDHEMISGRKQEIGm.....kgDP-S.F.V.TGLNITP...IGLQYLKENSLPKKVFKVAKDIKDFIK..........
Q9AYW8_BPTU2/10-108             ........SYKILAYLYH.A..M..KKGEKI.DP..G.VFDpqny..rvsyPYLNDILEELKENGYIKGVSFIETk.....dgKLIT.G.L.SDIKITI...KGIEYLDDNSMMKKAYKTLKELKDWIP..........
C2KWG9_9FIRM/7-103              .......i-YRILSILHK.A..M..D-LEEW.DS..K.LLSpeal..dislPMWSRLMAILLKEGYIAGGEVWESfd....vsYPKV.K.L.VRPEITL...KGLEYLEENSLMKKAGEMLKEV-----ihi.......
D0DUI4_LACFE/10-106             ........AYKILSYLKY.C..Y..EHGEQP.DP..G.VINertl..liskAQYVEILRMLSDHNYIEGVTFTHTk......eGVLY.S.F.QDARITI...EGLEYLAENSMMQKAFRIFKSFKEWL-..........
B2A5C4_NATTJ/10-108             .......i-FQILERLEK.A..M..DEEQFN.WE..K.EISheal..diseTRWTLIIEMMEENNLIKGLNIDRGa.....kgDISI.S.I.HSPRIRL...QGLNFLIENSQTAKVINAAKLLKDT--vp........
C7UYS8_ENTFL/7-91               .......r-YAIMKLRDE.K..K..NPFIEL.EG..Q.VPK..........EDILEQTKILSRNGLLESMVWADN........TVHI.W.G.N---VSL...EGEKYLVENSGLAKAYALAKEVKDWIP..........
E3C2V5_9LACO/14-112             .......v-FKLLVYFYA.C..L..KRVTVF.KQ..A.EFDlitkkagvdeRYLLDILRMMQDEGLIEGLAFTKAwg...eelILLG.N.V.SDAKITA...EGIHYLQDNGRMKKV------------laflidka..
C2HME0_LACAI/21-120             ........AYKILLYLKY.C..Y..ENGIEV.DP..D.ILSseni..giseKQFVLTLQMLLEDGYIKGVSLKPTiq....gpTIIC.N.I.QDTYATS...SGLQYLIENSMMHKAYKVSKEVRDWIP..........
YJCQ_BACSU/7-94                 ........RYAILKEIFE.G..N..TPLSEN.DI..G.VTE..........DQFDDAVNFLKREGYIIGVHYSDD........RPHL.Y.K.LGPELTE...KGENYLKENGTWSKAYKTIKEIKDWIK..........
#=GR YJCQ_BACSU/7-94      SS    ........HHHHHHHHHH.H..-..S---HH.HH..T.S-H..........HHHHHHHHHHHHHTSEE--EESSS........SEE-.-.S.S--EE-H...HHHHHHHHHT-S---XXXXXXXXXXXX..........
H7D3V5_9CLOT/10-112             .......v-YKLLSYLYS.C..L..KKGTYV.DI..E.NLRdvik.vdivdSYWNYIILELYKEGYIDGITKIKYig...dinENVK.I.N.KNIRIKP...KGIEFLESNSFVAKAKEFIKEAG----eilfw.....
C3IVP7_BACTU/4-86               ........EYKKHETDMF.S..F..ERFQEL.CP..D.ETD..........KSISKALCYLQDEGFV--------........SIYE.A.D.SIAYMTTllsAGIAYCEENTLLKKGYKAAKEIKSWMP..........
F5VGH4_9LACO/1-77               .......m----------.-..-..QKLTPE.YL..H.INQ..........RYFEYIFDTLNDEGLILNKKYYED........MLGK.H.LgSDIMISP...KGISFLHENSTIDKVKKSVKGI-----avii......
F9VIQ3_ARTSS/10-112             .......v-YKLLSYLYS.C..L..KKGTYV.DI..E.NLRdvik.vdivdSYWNYIILELYKEGYIDGITKIKYig...dinENVK.I.N.KNIRIKP...KGIEFLESNSFVAKAKEFIKEAG----eilfw.....
C9BRV5_ENTFC/7-91               ........RYAILKLRDE.K..K..NPFIEL.KG..Q.VPE..........EDILEQTKFLSRNGLLESMVWADN........TVHI.W.G.S---VSL...EGEKYLVENSGLAKAYALAKEVKNWIP..........
E3BTM4_9LACO/10-108             .......v-FKLLVYFYA.C..L..KRVTVF.KQ..A.EYDlitkkagvdeRYLLDILRMMQDEGLIEGLAFTKAwg...eelILLG.N.V.SDAKITA...EGIHYLQDNGRMKKV------------laflidka..
F7JDB3_9FIRM/10-109             .......v-YKILSYLYV.K..L..KSGEDT.NP..N.MIThdsqllqinrKYWDYIMRNLIEDGYIT-CET--Ekv...wgkELIY.D.L.KTAEITP...EGIAYVCNNSLIEKAKEFLKDIKE---itp.......
C8PDE3_9LACO/10-108             .......v-FKLLVYFYA.C..L..KRVTVF.KQ..A.EFDlitkkagvdeRYLLDILRMMQDEVLIEGLAFTKAwg...eelILLG.N.V.SDAKITA...EGIHYLQDNGRMKKV------------laflidka..
C7UBU3_ENTFL/7-91               .......r-YAIMKLRDE.K..K..NPFIEL.EG..Q.VPK..........EDILEQTKILSRNGLLESMVWADN........TVHI.W.G.N---VSL...EGEKYLVENSGLAKAYALAKEVKDWIP..........
H7D980_9CLOT/10-112             .......v-YKLLSYLYS.C..L..KKGTYV.DI..E.NLRdvik.vdivdSYWNYIILELYKEGYIDGITKIKYig...dinENVK.I.N.KNIRIKP...KGIEFLESNSFVAKAKEFIKEAG----eilfw.....
F7UWJ1_EEGSY/10-109             .......m-YKILAYLYD.C..M..KKGEEP.QN..S.MISydsdllgipaAYWNQIMAQMVELGLVKGIAVRYYd......nSPTV.L.I.SKPYVTL...EGVQFMQENSMMSKALKFLKESKA---alp.......
B1QIV0_CLOBO/10-108             ........IYKILSRLDK.A..M..DEENPD.LS..D.ISFetl...diseIKWVRILQMMVERGLIDGVEFIDFcg....qsYPSV.K.F.MDIRITL...EGIEYLMDNSTQAKLFRAAKELKDFIP..........
C2EIL3_9LACO/5-37               nhprswyi----------.-..-..------.--..-.---..........------------------------........----.-.-.-------...--IQYLEENSLIRKAYNTLKETKDWLP..........
H1AKF5_9FIRM/17-98              .......s-YSNDHKTIF.G..W..DSLKSL.HP..D.ETD..........KFICDAFRLLKKDNLV--------........NNNW.A.D.NVIYTTVlnvTAIREAEENTILKKTYSILKEIREWL-..........
D0AQZ2_ENTFC/9-98               ........RYAILKEIEN.G.nY..ENLDFG.IL..G.ISE..........EQFNDQLNFLKNESYIVGGTYGSN.......vLLPA.T.Y.RFLKLTE...KGEIFLAENSTFSKTYKMAKEIRDWIK..........
H3RPR1_9LACO/1-59               ........----------.-..-..------.--..-.---..........--------MLADHGYISGIQFHNTk.....mgKTYS.S.L.LDLRITI...EGLQYLAENSMMKKAYRIFKEVKDWLP..........
B1BLY6_CLOPF/11-102             ...mykey----LKDDSN.M..Q..ENINSE.KL..G.IKQ..........DEFFQALDKLQNEGLIDGIFITRGgi...ntpIIYA.E.A.RNAVVTR...DGIDYIENKVGIEKT------------ldskekikyl
C4F8C8_9ACTN/10-108             .......m-YRIIAYLYD.C..M..KRGVEP.ED..A.MWSsham..gipeSYWTSIVEQLVSHGYITGVGIEEYf.....ggERMV.S.I.FRPEVTM...EGLAFAEENSMMGKARKFLQDAKAAI-p.........
G2FW86_9FIRM/5-88               .....kii-YNVLSAIKK.GenL..SKLKFS.DF..G.LSL..........IEFRDLIDQIQDDDLIKGASVPRGqg....npDRMV.L.L.EASKITL...KGLAYLEKNSTL---------------vet.......
H7D5G6_9CLOT/10-112             .......v-YKLLSYLYS.C..L..KKGTYV.DI..E.NLRdvik.vdivdSYWNYIILELYKEGYIDGITKIKYig...dinENVK.I.N.KNIRIKP...KGIEFLESNSFVAKAKEFIKEAG----eilfw.....
H0USU6_9VIRU/17-99              ........EYKNHGTDMF.S..F..ETFKEL.YQ..N.ETD..........DFISKALYRLRDEDLV--------........SVYA.A.D.NVAYNTVllpQGIAYCEENNFLKTGYKFAKEARSWLS..........
E0NZJ0_9FIRM/7-104              ........IYRILKTLEV.S..M..DAEEFD.RR..A.ISAetl...rvseQRLLSILRMLVEAGLIEGVHIDVDa.....agNFMV.S.E.SRPRLTL...KGLEYLNENGLMQRAMKMAKGIKDSIP..........
H7FAD4_9CLOT/10-112             .......v-YKLLSYLYS.C..L..KKGTYV.DI..E.NLRdvik.vdivdSYWNYIILELYKEGYIDGITKIKYig...dinENVK.I.N.KNIRIKP...KGIEFLESNSFVAKAKEFIKEAG----eilfw.....
C7MPB3_CRYCD/10-102             .......v-YKVLAYIMA.C..A..KADVAP.SI..A.KAReis...kagsVYWAMVARSMVADGLIVGVSVETYyd....gtSEVT.A.G.TDFGITQ...RGAQYLRDNAKMREA------------ahllgs....
G9YWE1_9FIRM/10-103             .....vnk---FLRYLYK.C..L..KQNIAP.DW..N.LLApntkdfpvheEYFTYMLAHLLADGYIEGIAEVRRig....spVQFK.E.T.SGLKITP...AGIEYLEENSTMER-------------vtefl.....
F5VG86_9LACO/10-105             vfrvltyl-YNCLKQDEVvD..M..QKLTPE.YL..G.INQ..........RYFGYIFDTLDDEGLILNKAYYED........MLGK.H.L.ESDIMVS..pKGISFLHENSTIAKVKNSAKGI-----ldii......
B8I8U0_CLOCE/10-96              ........IYSILKEVES.G..N..KNLTHE.DY..D.IEF..........DLFWDISIMIRDAGLLKGVRFTL-........DPRV.A.F.ENSQITF...EGLNYLKSNSALSKTYKGLKAIREWLP..........
F7V714_CLOSS/19-117             .......v-YAILTELYA.A..A..RAGEKV.QL..A.HISperf..hideSYWLDIMCNQVDSGRIKGFKYMNIk.....tgRAVI.S.L.DDIGITE...CSIEFLMENSMMKKVVEALKIAKDILP..........
H7DCS8_9CLOT/10-112             .......v-YKLLSYLYS.C..L..KKGTYV.DI..E.NLRdvik.vdivdSYWNYIILELYKEGYIDGITKIKYig...dinENVK.I.N.KNIRIKP...KGIEFLESNSFVAKAKEFIKEAG----eilfw.....
#=GC SS_cons                    ........HHHHHHHHHH.H..-..S---HH.HH..T.S-H..........HHHHHHHHHHHHHTSEE--EESSS........SEE-.-.S.S--EE-H...HHHHHHHHHT-S---XXXXXXXXXXXX..........
#=GC seq_cons                   .........Y+lLphlht.s..h..cphpth.c...s.hhp.......lspphhsphlphLh--GhIcGlphhpth.......phhh.t.h.pshpITh...cGlcYLp-NShhpKshchhK-hpt.............
//