GenomeNet

Database: Pfam
Entry: YjcQ
LinkDB: YjcQ
Original site: YjcQ 
#=GF ID   YjcQ
#=GF AC   PF09639.8
#=GF DE   YjcQ protein
#=GF AU   Coggill P
#=GF SE   pdb_2hgc
#=GF GA   23.30 23.30;
#=GF TC   24.60 24.40;
#=GF NC   22.70 22.20;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   15033535
#=GF RT   Systematic analysis of SigD-regulated genes in Bacillus subtilis
#=GF RT   by DNA microarray and Northern blotting analyses. 
#=GF RA   Serizawa M, Yamamoto H, Yamaguchi H, Fujita Y, Kobayashi K,
#=GF RA   Ogasawara N, Sekiguchi J; 
#=GF RL   Gene. 2004;329:125-136.
#=GF RN   [2]
#=GF RM   15016546
#=GF RT   The prophages of Lactobacillus johnsonii NCC 533: comparative
#=GF RT   genomics and transcription analysis. 
#=GF RA   Ventura M, Canchaya C, Pridmore RD, Brussow H; 
#=GF RL   Virology. 2004;320:229-242.
#=GF DR   INTERPRO; IPR018597;
#=GF CC   YjcQ is a protein of approx. 100 residues containing four alpha
#=GF CC   helices and three beta strands. It is expressed in bacteria and
#=GF CC   also in viruses. It appears to be under the regulation of SigD
#=GF CC   RNA polymerase which is responsible for the expression of many
#=GF CC   genes encoding cell-surface proteins related to flagellar
#=GF CC   assembly, motility, chemotaxis and autolysis in the late
#=GF CC   exponential growth phase. The exact function of YjcQ is unknown
#=GF CC   [1]. However, it is thought to be a prophage head protein in
#=GF CC   viruses [2].
#=GF SQ   47
#=GS A0A0E3UUN9_9FUSO/38-133  AC A0A0E3UUN9.1
#=GS F7V709_CLOSS/16-53       AC F7V709.1
#=GS B8I8U0_CLOCE/10-94       AC B8I8U0.1
#=GS YJCQ_BACSU/4-92          AC O31639.1
#=GS YJCQ_BACSU/4-92          DR PDB; 2HGC A; 5-82;
#=GS F9VIQ3_ARTSS/11-109      AC F9VIQ3.1
#=GS R6AGU8_9FIRM/12-105      AC R6AGU8.1
#=GS U1GUZ1_TRESO/18-118      AC U1GUZ1.1
#=GS A0A0M1V0W3_CLOSO/3-91    AC A0A0M1V0W3.1
#=GS A0A075KC10_9FIRM/7-102   AC A0A075KC10.1
#=GS G1WGI6_9ACTN/11-105      AC G1WGI6.1
#=GS C7MPB3_CRYCD/11-103      AC C7MPB3.1
#=GS D2RJS3_ACIFV/1-82        AC D2RJS3.1
#=GS E4KQ92_9LACT/11-97       AC E4KQ92.1
#=GS A0A0D4CJ13_9LACO/11-106  AC A0A0D4CJ13.1
#=GS A0A0M2PCX7_9BACI/8-105   AC A0A0M2PCX7.1
#=GS R5X8J2_9FIRM/11-107      AC R5X8J2.1
#=GS F7UWJ1_EEGSY/11-107      AC F7UWJ1.1
#=GS R6HIB3_9ACTN/11-80       AC R6HIB3.1
#=GS R6NR22_9CLOT/8-102       AC R6NR22.1
#=GS F7V711_CLOSS/3-86        AC F7V711.1
#=GS G2FW86_9FIRM/5-89        AC G2FW86.1
#=GS F7NGE1_9FIRM/7-102       AC F7NGE1.1
#=GS K6DM73_9BACI/9-74        AC K6DM73.1
#=GS C2KWG9_9FIRM/8-103       AC C2KWG9.1
#=GS A0A075JJE1_9BACI/4-92    AC A0A075JJE1.1
#=GS E6MH26_9FIRM/9-59        AC E6MH26.1
#=GS E0E3V7_9FIRM/8-99        AC E0E3V7.1
#=GS C8PDE3_9LACO/11-110      AC C8PDE3.1
#=GS J5UL11_9FIRM/8-100       AC J5UL11.1
#=GS I7IZF4_9LACO/1-58        AC I7IZF4.1
#=GS R6M2H2_9FIRM/8-101       AC R6M2H2.1
#=GS G9YWE1_9FIRM/11-109      AC G9YWE1.1
#=GS A0A0A0X0T5_9SPIO/9-106   AC A0A0A0X0T5.1
#=GS F7V714_CLOSS/20-115      AC F7V714.1
#=GS F7V708_CLOSS/1-59        AC F7V708.1
#=GS Q5FM49_LACAC/22-118      AC Q5FM49.1
#=GS C7MM64_CRYCD/11-103      AC C7MM64.1
#=GS B2A5C4_NATTJ/11-106      AC B2A5C4.1
#=GS F7V702_CLOSS/11-101      AC F7V702.1
#=GS A0A0A0WZ27_9SPIO/20-111  AC A0A0A0WZ27.1
#=GS E6U3U0_ETHHY/87-177      AC E6U3U0.1
#=GS R5KEQ8_9CLOT/11-73       AC R5KEQ8.1
#=GS C4F8C8_9ACTN/11-106      AC C4F8C8.1
#=GS Q65PQ3_LACJO/11-106      AC Q65PQ3.1
#=GS A0A0N0VNQ2_9BACI/11-97   AC A0A0N0VNQ2.1
#=GS E5BHZ7_9FUSO/9-104       AC E5BHZ7.1
#=GS F4LSP5_TEPAE/8-104       AC F4LSP5.1
A0A0E3UUN9_9FUSO/38-133             ..............YKILKIIDNGYKNKQPI-.....--..NF..DLKS..LNITEHELGLYLHNLIEANYIEGIIVSKALNqtyF.EKY.R..F..YQYARLTLDGMLFYESN.......TTIKRFCKNLKET---vef..............
F7V709_CLOSS/16-53                  ..............YQVLKYMYDCLKAGEKVE.....AV..RL..TADA..YMIPENYWGYI--------------------...-.---.-..-..-----------------.......----------------y................
B8I8U0_CLOCE/10-94                  .............iYSILKEVESG--------.....NK..NL..THED..YDIEFDLFWDISIMIRDAGLLKGVRFTL---...-.DPR.V..A..FENSQITFEGLNYLKSN.......SALSKTYKGLKAIREW.................
YJCQ_BACSU/4-92                     ............dk------LRYAILKEIFEG.....NT..PL..SEND..IGVTEDQFDDAVNFLKREGYIIGVHYSDD--...-.RPH.L..Y..KLGPELTEKGENYLKEN.......GTWSKAYKTIKEIKDW.................
#=GR YJCQ_BACSU/4-92          SS    ............X--------HHHHHHHHHHH.....-S..--..-HHH..HTS-HHHHHHHHHHHHHHTSEE--EESSS--...-.SEE.-..-..SS--EE-HHHHHHHHHH.......T-S---XXXXXXXXXX.................
F9VIQ3_ARTSS/11-109                 ..............YKLLSYLYSCLKKGTYVD.....IE..NL.rDVIK..VDIVDSYWNYIILELYKEGYIDGITKIKYIGd.iN.ENV.K..I..NKNIRIKPKGIEFLESN.......SFVAKAKEFIKEAGE-i................
R6AGU8_9FIRM/12-105                 .............i--ILSYMYECLKTGKQVK.....LE..LM..NPEA..LKLCDNYWMYIIRHLVKDGYIEGVLCTHTKE...G.-YS.F..T..FDDINITPKGIEYLQEN.......SYMQKAKETVRS----lanf.............
U1GUZ1_TRESO/18-118                 ..............YKLLNRLEKSLDVDKETHrgfkiSD..EI..GHEA..LDISYPRWKEYITMLRDAGYIDGVRIKSFID...G.TSS.V..D..ISEIRITLQGLQYLAEN.......TMMLRTYKMIKGIKDI.................
A0A0M1V0W3_CLOSO/3-91               ............ke-----KLRYAMLKEIDKG.....NV..PL..SEQD..FNVEEDIFDEAAWFLQREGYLIGVGKGDD--...-.-RA.W..I..EIDTKLTEKGERYLKEN.......STLAKGYKGLKEFKSW.................
A0A075KC10_9FIRM/7-102              .............q-KVLIAIYTEYQKDIPD-.....MA..SI..TSSN..LGIDHDIFKIALDKLDNEGLVNGLNILKGGYr.sI.PKQ.V..I..IHHAKMSSYGINYVE--.......----------------tklniqpslsnkekvkv
G1WGI6_9ACTN/11-105                 ..............YTILKYLYECLKSGIDPD.....PL..KF..SAEA..LGINERYWTAIVADLANRGYIRGVVVVHKPS...G.-DV.V..Q..VVNPSVTIEGVEFMMEN.......SMMQKALDFVKEAK--sa...............
C7MPB3_CRYCD/11-103                 ..............YKVLAYIMACAKADVAPS.....IA..KA..R-EI..SKAGSVYWAMVARSMVADGLIVGVSVETYYD...GtSEV.T..A..GTDFGITQRGAQYLRDN.......AKMREAAHL-------lgsa.............
D2RJS3_ACIFV/1-82                   ..........mknf-----------------D.....DE..NF..TASH..FAVSDALFLNILQSLIEAGYIGGIKIVTDKC...G.-SA.I..S..LISPHLSLSGMEYLADN.......TMMKKAYRLLKGIRD-v................
E4KQ92_9LACT/11-97                  ..............FKVLSYFYNQKKNGKEIK.....EE..NI..NAYK..LQVNQTYLMDIYKELFEEGYLKGGHVRSYMD...G.SIQ.L.dN..FEDIRITIAGVEFLKEN.......NQMKK-----------s................
A0A0D4CJ13_9LACO/11-106             ..............YKILSYLKFCYENGQTPD.....PN..VL..NADT..FNVSKVQFGNTLEMLADHGYISGIQFHNTKM...G.KTY.S..S..LLDLRITIEGLQYLAEN.......SMMKKAYRIFKEVKDW.................
A0A0M2PCX7_9BACI/8-105              ............qq--VLVAIYTEYQKDLPN-.....MS..SV..NHES..LEMDEEIFVVALEKLLNEGLIIDVDFYLG--...G.--D.Y..S..LQTTKMTSYGLNYVEEKlgieptlSGAEKVKE--------vakqatqf.........
R5X8J2_9FIRM/11-107                 ..............YKILKYLYESIKAGHRAA.....LS..EVawHCEL..FDITRDYWLYIMHDLIERELVSGLKYVDAKD...M.ESV.L..K..VGTFAITQVGREYLKEN.......NLMQKVKSLL------geafk............
F7UWJ1_EEGSY/11-107                 ..............YKILAYLYDCMKKGEEPQ.....NS..MI..SYDSdlLGIPAAYWNQIMAQMVELGLVKGIAVRYYDN...-.SPT.V..L..ISKPYVTLEGVQFMQEN.......SMMSKALKFLKESKA-a................
R6HIB3_9ACTN/11-80                  ..............FKILSYLYRRMKSGKKVD.....IA..AL..R-QL..VGCNETYFGAVVRSLQSKGLVEGCDLRERE-...-.---.-..-..-----------------.......----------------lanaqgkglcrarir..
R6NR22_9CLOT/8-102                  ..............YKILKKLEKAMDLDEFS-.....ID..DV..SAEV..LKISESRWAAIIEMLCENGYIAGVTVQRSVD...G.EIQ.I..S..ESSLRITLKGLEYLSDN.......SFMKKAANVAKGIV--et...............
F7V711_CLOSS/3-86                   ..............YRILRYIDICLKSGKTPT.....KE..DIlrDCQL..YKLSESYADALLEEVSDDGYVKGISIVSTKD...G.GVV.I..V..HDNVRIRLTGRNYLTE-.......----------------ven..............
G2FW86_9FIRM/5-89                   .............k--IIYNVLSAIKKGENL-.....-S..KL..KFSD..FGLSLIEFRDLIDQIQDDDLIKGASVPRGQG...NpDRM.V..L..LEASKITLKGLAYLEKN.......STL-------------vetk.............
F7NGE1_9FIRM/7-102                  kvlvavyvelnsva----------------PQ.....PG..QI..SPAS..LQMEEESFQRAINILYTEGLISGASIKIGDDe.aN.PTQ.V..S..IDDVLITRAGVSFMESY.......T---------------gishqlpkldklqkl..
K6DM73_9BACI/9-74                   ..silrqlgdgkqp------------------.....--..--..KHED..YNVDEELWRSTASFLKDEGYIKNITISKNTK...-.---.-..-..YMFAELTQDGEEYLKEK.......S---------------i................
C2KWG9_9FIRM/8-103                  ..............YRILSILHKAMDLEEWD-.....SK..LL..SPEA..LDISLPMWSRLMAILLKEGYIAGGEVWESFD..vS.YPK.V..K..LVRPEITLKGLEYLEEN.......SLMKKAGEMLKEV---ihi..............
A0A075JJE1_9BACI/4-92               .............n-----KLRYAILKEIDSD.....NK..AL..TEED..FAVTADQFDDAIRFLSRENYLMGVFYADD--...-.RPW.L..F..EGTAYLTEDGENYLKEN.......SSFTKTYRGLKEIRDW.................
E6MH26_9FIRM/9-59                   ..............YRILSILEKSMNYPEFD-.....PD..SI..SAKT..LGVSEERWRLCIQMMADDGYVTDVQ------...-.---.-..-..-----------------.......----------------i................
E0E3V7_9FIRM/8-99                   ..............YKILVGIEASMDSNRFD-.....GT..F-..-LEA..LKISEERRNKILQSMIDDGLIDGFTRVNYAG...G.-YG.F..K..ALEHRLTIKGMEFLQEN.......SAMQKIKNGLKDIKD-v................
C8PDE3_9LACO/11-110                 ..............FKLLVYFYACLKRVTVFK.....QAefDL..ITKK..AGVDERYLLDILRMMQDEVLIEGLAFTKAWG...E.ELI.LlgN..VSDAKITAEGIHYLQDN.......GRMKKVLAFL------idkadt...........
J5UL11_9FIRM/8-100                  ..............YKILKNLESA--KDVEYM.....GT..LI..SPEH..LNVSDEEWLMVMKNLLEEGYIRGVDISKNVL...G.ETK.V..N..IEEARITLKGAQYLHEN.......SAMQKFMRIA------tnvit............
I7IZF4_9LACO/1-58                   ..............------------------.....--..--..----..-------------MLLDDGYITGVSLERTVN...G.PIV.V.nN..IQNTEITSKGLQYLEEN.......SMMKKVCKVLKEFRAW.................
R6M2H2_9FIRM/8-101                  ..............YKILKVLESAMDCDEVD-.....RS..LL..KAEN..FKITENRFENIIRMLAKEEYITGVIIVDMIG...-.IQG.I..K..FDDVRITLKGLEYLSEN.......SLMKKAANLAKSIKET.................
G9YWE1_9FIRM/11-109                 .............n-KFLRYLYKCLKQNIAPD.....WN..LL..APNTkdFPVHEEYFTYMLAHLLADGYIEGIAEVRRIG...S.PVQfK..E..TSGLKITPAGIEYLEEN.......STMERVTEFL------gpagei...........
A0A0A0X0T5_9SPIO/9-106              ..............YTLLNRLEKGLDYEDFDA.....EK..EI..SPKA..LKITENRWNAYIKMLNDAGYITGVRIDDYIN...G.EVD.I..D..ISEISLTLQGLQYLAEN.......TMMVRMWNAFKTVKE-vkd..............
F7V714_CLOSS/20-115                 ..............YAILTELYAAARAGEKVQ.....LA..HI..SPER..FHIDESYWLDIMCNQVDSGRIKGFKYMNIKT...G.RAV.I..S..LDDIGITECSIEFLMEN.......SMMKKVVEALKIAKDI.................
F7V708_CLOSS/1-59                   ..............------------------.....--..--..----..-----------MITMIDQGFISGIEYTPTKD...G.ILF.S..N..LENALITFNGVEYLFDN.......SLMQKLKRTLKDVK--gi...............
Q5FM49_LACAC/22-118                 ..............YKILLYLKYCYENGIEVD.....PD..IL..SSEN..IGISEKQFVLTLQMLLEDGYIKGVSLKPTIQ...GpTII.C..N..IQDTYATSSGLQYLIEN.......SMMHKAYKVSKEVRDW.................
C7MM64_CRYCD/11-103                 ..............YKVLAYIMACAKADVVPS.....IA..KA..R-EI..SKAGSVYWAMVARSMVADGLIVGVSVETYYD...GtSEV.T..A..GTDFGITQRGAQYLRDS.......SKMREAAHL-------lgsa.............
B2A5C4_NATTJ/11-106                 ..............FQILERLEKAMDEEQFNW.....EK..EI..SHEA..LDISETRWTLIIEMMEENNLIKGLNIDRGAK...G.DIS.I..S..IHSPRIRLQGLNFLIEN.......SQTAKVINAAKLLKDT.................
F7V702_CLOSS/11-101                 ..............YRILSYLYQQLKDGTEID.....ES..KI..DEHA..LNIPHSYWIYIFDELQSAKYTKGYTIVNVNG...G.RKR.L.eH..LDRAVITLRGVEYLTSD.......QLMIKVKN--------es...............
A0A0A0WZ27_9SPIO/20-111             ..............YEILSRLERKLDNVEKP-.....--..DI..SSKT..LCITEARRDAYIKMLEEEGYITGSRCKRTVE...G.EDH.V..I..ANKARITLKGLQYLVEN.......KQMLRC----------fnedrkvin........
E6U3U0_ETHHY/87-177                 .......seiikll----------LEKYQSGD.....AS..NI..DPAE..YGVDRIRLLEIVDIMEKGNLIKGASITRAGQ...G.NKI.V..YgwPEQARITLQGINYLQGR.......SAT-------------mtnqttyni........
R5KEQ8_9CLOT/11-73                  ..............FKILTYLYACVKRKTVFE.....EA..AF..YHAI..GEIEKSYLIDILYMMKNEGLIEGVAVQKVWG...T.---.-..-..-----------------.......----------------eksih............
C4F8C8_9ACTN/11-106                 ..............YRIIAYLYDCMKRGVEPE.....DA..MW..SSHA..MGIPESYWTSIVEQLVSHGYITGVGIEEYFG...G.ERM.V..S..IFRPEVTMEGLAFAEEN.......SMMGKARKFLQDAK--aa...............
Q65PQ3_LACJO/11-106                 ..............YKILSYLKYCYEEGQNPD.....LD..IL..DAPT..FKISNNQFYKTLMMLMDDGYIKGLKFTPTKT...G.TIV.S..N..MDRVYITSDGLQYLEEN.......TMMKKAYKIFKEVRDW.................
A0A0N0VNQ2_9BACI/11-97              ..............YSILKEIEKG----NEP-.....--..--..KRED..YGLEFEQWGELAELIRDCGFVRNLGVMYAND...V.VYI.V..S..FSSAKITIQGLDYLEEN.......SVFARTYKGLKEVRDW.................
E5BHZ7_9FUSO/9-104                  ..............YKILRTIDYCYSKKIMI-.....--..KF..DLEK..LGLSQHELGLYLHNLVEAGYIGGIIISQAFGqthF.EKY.R..A..HEYAYITLSGMMFLEEN.......SEMKNFYKTITEIRDW.................
F4LSP5_TEPAE/8-104                  ..............YKILQKLDETLDENNPD-.....FT..DL..SPES..LGISEERRNYILEMMQDAGLIKGVNFIRDGNn.rA.PIM.A..F..LDNMKITLKGIEYLAEN.......SSTAKILRAAKEIKD-l................
#=GC SS_cons                        ............X--------HHHHHHHHHHH.....-S..--..-HHH..HTS-HHHHHHHHHHHHHHTSEE--EESSS--...-.SEE.-..-..SS--EE-HHHHHHHHHH.......T-S---XXXXXXXXXX.................
#=GC seq_cons                       ..............aplLthl.tshcps..s.......s..tl..s.cs..hslscshat.hlp.LhccGaIpGlphtpshs...s...h.h..t..hppspIT.pGlpYLpEN.......ohht+shphh.......................
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