#=GF ID   YliH
#=GF AC   PF10799.12
#=GF DE   Biofilm formation protein (YliH/bssR)
#=GF AU   Pollington J;0000-0002-8158-8998
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF SE   PRODOM
#=GF GA   20.40 20.40;
#=GF TC   21.10 20.80;
#=GF NC   19.40 19.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   16597943
#=GF RT   YliH (BssR) and YceP (BssS) regulate Escherichia coli K-12
#=GF RT   biofilm formation by influencing cell signaling. 
#=GF RA   Domka J, Lee J, Wood TK; 
#=GF RL   Appl Environ Microbiol. 2006;72:2449-2459.
#=GF DR   INTERPRO; IPR020359;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   YliH is induced in biofilms and is involved in repression of
#=GF CC   motility in the biofilms [1]. YliH is also known as bssR
#=GF CC   (regulator of biofilm through signal secreton).
#=GF SQ   44
#=GS A0A078LBA4_CITKO/1-126   AC A0A078LBA4.1
#=GS J2DNF8_KLEPN/1-40        AC J2DNF8.1
#=GS H5UX96_ATLHE/1-125       AC H5UX96.1
#=GS A0A663B0X3_9ENTR/1-126   AC A0A663B0X3.1
#=GS A0A485D464_KLUCR/1-108   AC A0A485D464.1
#=GS A0A5Q2K5J9_9ENTR/1-126   AC A0A5Q2K5J9.1
#=GS A0A084ZU83_9ENTR/1-126   AC A0A084ZU83.1
#=GS A0A2X4TF63_SALER/1-126   AC A0A2X4TF63.1
#=GS W1EK70_KLEPN/2-127       AC W1EK70.1
#=GS A0A0A2W5I3_BEABA/1-125   AC A0A0A2W5I3.1
#=GS A0A085G9N7_9ENTR/1-126   AC A0A085G9N7.1
#=GS A0A0H3GKH0_KLEPH/1-126   AC A0A0H3GKH0.1
#=GS A0A0L0AME7_9ENTR/1-126   AC A0A0L0AME7.1
#=GS W1DMY6_KLEPN/1-126       AC W1DMY6.1
#=GS A0A2I8Q6B6_9ENTR/1-126   AC A0A2I8Q6B6.1
#=GS A0A4Z0KTE9_SALET/1-126   AC A0A4Z0KTE9.1
#=GS A0A090VYB3_PSEVU/1-126   AC A0A090VYB3.1
#=GS A0A509C8I8_9ENTR/1-126   AC A0A509C8I8.1
#=GS A0A0J8VLV6_9ENTR/1-125   AC A0A0J8VLV6.1
#=GS A0A447M7F1_SALBN/1-126   AC A0A447M7F1.1
#=GS BSSR_ECO57/1-126         AC P0AAY2.1
#=GS A8AIT2_CITK8/12-137      AC A8AIT2.1
#=GS BSSR_SHIFL/1-126         AC P0AAY3.1
#=GS A0A3N1IV60_9ENTR/1-126   AC A0A3N1IV60.1
#=GS A0A378BQ96_KLEPO/1-126   AC A0A378BQ96.1
#=GS A0A5R9LJV2_9ENTR/1-126   AC A0A5R9LJV2.1
#=GS A0A0J2I6A1_9ENTR/1-126   AC A0A0J2I6A1.1
#=GS Q7CQV3_SALTY/1-126       AC Q7CQV3.1
#=GS A6T6T3_KLEP7/13-138      AC A6T6T3.1
#=GS A0A4R6EY61_9ENTR/1-126   AC A0A4R6EY61.1
#=GS A0A378DHR1_KLEPR/1-126   AC A0A378DHR1.1
#=GS A0A8H9YT66_9PSED/1-126   AC A0A8H9YT66.1
#=GS E3G291_ENTLS/1-126       AC E3G291.1
#=GS W1HSM1_KLEPN/1-126       AC W1HSM1.1
#=GS A0A1U8PEH5_GOSHI/15-102  AC A0A1U8PEH5.1
#=GS A0A6B2FTP6_9ENTR/1-122   AC A0A6B2FTP6.1
#=GS A9MIP4_SALAR/1-126       AC A9MIP4.1
#=GS A0A443IIV6_9BACI/1-126   AC A0A443IIV6.1
#=GS I2BAV5_SHIBC/1-124       AC I2BAV5.1
#=GS D2TQF0_CITRI/1-126       AC D2TQF0.1
#=GS A0A4P7IXZ8_9ENTR/1-126   AC A0A4P7IXZ8.1
#=GS A0A071M744_9ENTR/1-124   AC A0A071M744.1
#=GS L0M6M3_ENTBF/1-126       AC L0M6M3.1
#=GS BSSR_ECOLI/1-126         AC P0AAY1.1
A0A078LBA4_CITKO/1-126              ..................MVVDRLRTELLNKLINARIDLAAYLQLRKAKGYMSVSESDHLRDNFFELNRGLHDKSLLQGLHLDQEEWNALHRAEGALAAAAVCLMSGHHDCPTFIAVNAEKLENCLTTLTLSIQSLKAQSPLEQ...................
J2DNF8_KLEPN/1-40                   ..................--------------------------------------------------------------------------------------MSGHHDCPLYIAVNVEKLERCLTGLTSNIHKLNKLAPITH...................
H5UX96_ATLHE/1-125                  .............msrat-----LKYELQQQLIVSRNSLSAYLKLRKAKGYMSVAESNHLRDSLFALCTTYRENYPRLKLVLHEDELAALHHGLDAASSAAVCLMTGCHDCPLYITVDAEKLEHAIDAMNLSLCQLTHHQ----vpa................
A0A663B0X3_9ENTR/1-126              ..................MTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRENLFELCREMRAQAPRLQHVISPEEKDALRLAGESVAAAAVCLMSGHHDCPLYIAVNVEKLERCLTGLTSNIHKLNKLSPIP-h..................
A0A485D464_KLUCR/1-108              ..................------------------MDLDAYLQLRKAKGYMSVSDNDHLRTNLLELCGELRRSVIALKRGSSPTELDIFRQAGEAIASAAVCLMSGRYDCPSYIAVNVVTLDRCLAALAKSIQKLDAESSMT-l..................
A0A5Q2K5J9_9ENTR/1-126              ..................MSVDRLKRDLLNKLINARIDLAAYLQLRKAKGYMSVSESEHLRDNLFELCNFMREKAPILKMEYDESELIALRRAAEMLTAAGVCLMTGRHDCPTFIAVNAEKLENCLTTISLCIMCLNEHAKLEQ...................
A0A084ZU83_9ENTR/1-126              ..................MSVGRLKRNMMKKLINARSDLDAYLQLRKAKGYMSVSENDHLRENLFELCKEMINEIVPLRKSLTREERDTLRQAGEAVASAAICLMTGHRDCPLYITVNVETLERCLETLTSSIQKLDAVS----shah...............
A0A2X4TF63_SALER/1-126              ..................MVVDRLRTDLLNKLINARIDLAAYLQLRKAKGYMSVSESDILRDNFFELNRELHDQVLRQGLHLDQEEWNALRRAEGALAAAAVCLMSGHHDCPTFIAVNADKLENCLTTLTLSIQSLKVHSPLI-q..................
W1EK70_KLEPN/2-127                  ..................MTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFELCREMRAQAPRLQNAISPEERDVLRLAGESVAAAALCLMSGHHDCPLYIAVNVEKLERCLTGLTSNIHKLNKLAPITH...................
A0A0A2W5I3_BEABA/1-125              .............msgrt-----LKNDLLQKLKVAKGEIAAYLALRKAKGYMSVSESELLRGRLLDVCHRSHDAAFMLQASLPDDEKDDFRHAVEACSSAALCLMSGRKDCPQYIAVDAAKLEASLMLLSRSLNALAA------rgkai..............
A0A085G9N7_9ENTR/1-126              ..................MTGEPLKRDLLKKMIIAKIDIAAYLRMRKAKGYMSVAETEHLRDNLFDLSNEYREKSLRLKSHLALQEIASLNQGMSAVCSAAVCLMTGRHDCPQYIAIDAGKLESCLSDLSDSLKEIMGH-----qlave..............
A0A0H3GKH0_KLEPH/1-126              ..................MTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFELCREMRAQAPRLQNAISPEERDVLRLAGESVAAAALCLMSGHHDCPLYIAVNVEKLERCLTGLTSNIHKLNKLAPITH...................
A0A0L0AME7_9ENTR/1-126              ..................MSFDRLHHNLLNKLIDARIDIDAYLQLRRAKGYMTVRESKLLRDGLFTLCAELRQCAPQLKTNCTLPEREALRHAGEAIARAALCLMSGHHDCPQYVAVDTHKLASCLATLTHAIHCLRSAASLEQ...................
W1DMY6_KLEPN/1-126                  ..................MTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFELCREMRAQAPRLQNAISPEERDVLRLAGESVAAAALCLMSGHHDCPLYIAVNVEKLERCLTGLTSNIHKLNKLAPITH...................
A0A2I8Q6B6_9ENTR/1-126              ..................MTVDELTHCLLDKLVDARADLAIYIQMRKAKGYMSVSENDQLREHFFDLAREIRDNGVQLNTLQDADTRGALYRAEEAISSVAVCLLSGRQDCPTYIAVNVEKLERAFNVLNFSIKYLCEHVPLA-e..................
A0A4Z0KTE9_SALET/1-126              ..................MVVDRLRTDLLNKLINARIDLAAYLQLRKAKGYMSVSESDTLRDNFFELNRELHDHALRQGLHLDQEEWNALRRAEGALAAAAVCLMSGHHDCPTFIAVNADKLENCLTTLTLSIQSLKAHSPLTQ...................
A0A090VYB3_PSEVU/1-126              ..................MIVDRQKRSLLRKLANASIDLAAYVQLRKAKGYMSVSESNYLRDSFFELSTQIRGLERHAYVVPDAREREALCLAEGALSAAGICLMSGHHDCPNYIAVNVETLDRCLKTLNVCIQNLNEQAPL--vi.................
A0A509C8I8_9ENTR/1-126              ..................MVVDRLRTDLLNKLINARIDLAAYLQLRKAKGYMSVSESDSLRDNFFELNRELHDQSLRQGLHLDQEEWNALRRVEGALAAAAVCLMSGHHDCPTFIAVNADKLENCLTTLTLSIQSLKAHSPLI-q..................
A0A0J8VLV6_9ENTR/1-125              ..................MISDRVRHDLLKKTIIAKVDLMAYLQLRKAKGYMSVAESHYLRDNLFDLCKEYRRHYALLKQTQKSTELAAFTQCLDALSGAAVCLMTGQHDCPLYITVDAEKLERAIITLQRCTHLLS-------dlrkpa.............
A0A447M7F1_SALBN/1-126              ..................MVVDRLRTDLLNKLINARIDLAAYLQLRKAKGYMSVSESDTLRDNFFELNRELHDQSLRQRLHLDQEEWNALRRAEGALAAAAVCLMSGHHDCPAFIAVNADKLENCLTTLTLSIQSLKAHSPLI-q..................
BSSR_ECO57/1-126                    ..................MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRDNFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNADKLENCLMSLTLSIQSLQKHAMLEK...................
A8AIT2_CITK8/12-137                 ..................MVVDRLRTELLNKLINARIDLAAYLQLRKAKGYMSVSESDHLRDNFFELNRGLHDKSLLQGLHLDQEEWNALHRAEGALAAAAVCLMSGHHDCPTFIAVNAEKLENCLTTLTLSIQSLKAQSPLEQ...................
BSSR_SHIFL/1-126                    ..................MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRDNFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNADKLENCLMSLTLSIQSLQKHAMLEK...................
A0A3N1IV60_9ENTR/1-126              ..................MSIARLKRNLLNKLINACIDLDAYLQLRKAKGYMTVSESDELRDNLFDLCTEMRTQGAQLSTLPEPREREALHNAAEAMVTAAVSLMSGRHDCPQFVAVDAEKLERCLAVLTTSIQHLNANAS---hts................
A0A378BQ96_KLEPO/1-126              ..................MTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFELCREMRAQAPRLQNAISPEERDVLRLAGESVAAAALCLMSGHHDCPLYIAVNVEKLERCLTGLTSNIHKLNKLAPITH...................
A0A5R9LJV2_9ENTR/1-126              ..................MTVDRRYRNLMNKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFELCHEMREHAPLLQYAATPEERESLRLAGEAVASAAICLMSGHHDCPAYIAINVDKLERCLAVLTLNIHKLNALAPVTH...................
A0A0J2I6A1_9ENTR/1-126              ..................MSVDRLYRNLMNKLINANIDLDAYLQLRKAKGYMSVSENDHLRDNLFELCHEMRQHAPRLQHVVAPEEKDALRLAGEAVASAAVCLLSGHHDCPSYIAVDVDKLESCLAVLRLNIHKLNDSKPITH...................
Q7CQV3_SALTY/1-126                  ..................MVVDRLRTDLLNKLINARIDLAAYLQLRKAKGYMSVSESDTLRDNFFELNRELHDHALRQGLHLDQEEWNALRRAEGALAAAAVCLMSGHHDCPTFIAVNADKLENCLTTLTLSIQSLKAHSPLTQ...................
A6T6T3_KLEP7/13-138                 ..................MTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFELCREMRAQAPRLQNAISPEERDVLRLAGESVAAAALCLMSGHHDCPLYIAVNVEKLERCLTGLTSNIHKLNKLAPITH...................
A0A4R6EY61_9ENTR/1-126              ..................MHVDRLFRNLLNKLANAQIDLAAYLQLRRAKGYMSVSDNDHLRENLFELCGELRHHAATLSSSLTSAQNEALYTAGEALASAAVSLMTGHHDCPSFIAVNPDALQRCLDTLSDNIQALNKSAP---rah................
A0A378DHR1_KLEPR/1-126              ..................MTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFELCCEMRAQAPRLQNAISPEERDVLRLAGESVAAAALCLMSGHHDCPLYIAVNVEKLERCLTGLTSNIHKLNKLAPITH...................
A0A8H9YT66_9PSED/1-126              ..................MSVDRLKRDLLNKLINARIDLAAYLQLRVAKGYMSVSESDHLRENCFELCTYMRQHAPILKDHYDADEQRVLRRAADALSKAAVCLMTGHHDCPTFVAVSADKLENCLTTLTLCIMCLKEHTPLQQ...................
E3G291_ENTLS/1-126                  ..................MNVDRLKRNLMDKLVNARIDIAAYLQLRRAKGYMSVSENDHLRDNLFELCAELRDKRALIAPSVTPQQQEALHMAGEAMASAAVCLMTGHHDCPLYIAVNVETLGRCLTTLDNSIQDMNAPAPM--vr.................
W1HSM1_KLEPN/1-126                  ..................MTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFELCREMRAQAPRLQNAISPEERDVLRLAGESVAAAALCLMSGHHDCPLYIAVNVEKLERCLTGLTSNIHKLNKLAPITH...................
A0A1U8PEH5_GOSHI/15-102             vaelinnsllatlalplt-----------------QVDPMKVIKVRVEVGYMIIAGTNGLFDNLFELQ-ILATTSKRIKQNLDAEEM---------------------------------------------------------awemaqlayhtsrdksavt
A0A6B2FTP6_9ENTR/1-122              .............mhelr-----DEALLLQRLGEMHRTLFSTLQICRACGQLSMAESERLRDALFALSAQFRLP----GEGVPEQEIVLCQNAAQALSHAALCLMSGPHDCPQWCSVDARKLAACVDELGNVHNALEQASTV--tp.................
A9MIP4_SALAR/1-126                  ..................MVVDRLRTDLLNKLINARIDLAAYLQLRKAKGYMSVSESEILRDNFFELNRELHDQVLRQGLHLDQEEWNALRRAEGALAAAAVCLMSGHHDCPTFIAVNADKLENCLTTLTLSIQSLKAHSPLI-q..................
A0A443IIV6_9BACI/1-126              ..................MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRDNFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNADKLENCLMSLTLSIQSLQKHAMLEK...................
I2BAV5_SHIBC/1-124                  ...............mpg----RHKQDLVQKMIAAQSELQRYLILHKAKGYMADSDSAQLREILFGLCSTLREQFPLFRSILTQEEVMAFQEGTGALTTAALCLMGGKHDCPRFVAVDTAKLEQNLKIV---------------qratgyltrnhtvq.....
D2TQF0_CITRI/1-126                  ..................MFVDRLRTDLLNRLIDARIDLAAYLQLRKAKGYMSVSENDHLRENFFELNRELHDDSLRLNLHLDQEEWEALHRAEGALAAAAVCLMSGHHDCPTFIAVNADKLDACLTTLTLSIQSLQAHSSLEH...................
A0A4P7IXZ8_9ENTR/1-126              ..................MVVDRLRTDLLNKLINARIDLAAYLLLRKAKGYMSVSESDRLRDNFFALNRELHDQSQLHGMHLDQEEWNALRRAEGALAAAAVCLMSGHHDCPTYIAVNAEKLENCLTTLTLSIQSLQMYSTLEH...................
A0A071M744_9ENTR/1-124              ..................MIAKKCKAELVAKMTAARAALQCYSELRRAKGYMSVNEGLQLRETLLALCNDFRDDWPAIRADLPGSEITDFHRAIEAVASASLCLLSGGHDCPSYITVDASKLQACIDDLDECLNHLDSHA----ed.................
L0M6M3_ENTBF/1-126                  .............msgmt-----LKRNMMNKIINARIDLDAYLQLRKAKGYMSISDNEHLRTNLFDLCGELRSKAPQLIQSATPKERDALRQAGEAIASAAVCLMTGHHDCPTSIAVNVASLERCLTTLSESIYSMNAHI----dtlh...............
BSSR_ECOLI/1-126                    ..................MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRDNFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNADKLENCLMSLTLSIQSLQKHAMLEK...................
#=GC seq_cons                       ..................MsVDRL+pcLLpKLINA+IDLsAYLQLRKAKGYMSVSEs-+LRDNhFELs+Eh+spu.pLphtlstEEhsAL+pAt-AlAuAAVCLMSGHHDCPpaIAVNs-KLEpCLssLT.sIppLpttusl.....................
//