GenomeNet

Database: Pfam
Entry: gp12-short_mid
LinkDB: gp12-short_mid
Original site: gp12-short_mid 
  All links  
No link information was found.   
#=GF ID   gp12-short_mid
#=GF AC   PF09089.5
#=GF DE   Phage short tail fibre protein gp12, middle domain
#=GF AU   Sammut SJ
#=GF SE   pdb_1h6w
#=GF GA   25.00 25.00;
#=GF TC   25.50 26.00;
#=GF NC   21.90 18.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   11743729
#=GF RT   Crystal structure of a heat and protease-stable part of the
#=GF RT   bacteriophage T4 short tail fibre. 
#=GF RA   van Raaij MJ, Schoehn G, Burda MR, Miller S; 
#=GF RL   J Mol Biol. 2001;314:1137-1146.
#=GF DR   INTERPRO; IPR015173;
#=GF DR   SCOP; 1h6w; fa;
#=GF CC   Members of this family adopt a right-handed triple-stranded
#=GF CC   beta-helix fold, and are found in the middle of the phage short
#=GF CC   tail fibre protein gp12 [1].
#=GF SQ   20
#=GS Q7Y2B4_BPR69/246-324  AC Q7Y2B4.1
#=GS Q8JU38_BPAR1/246-324  AC Q8JU38.1
#=GS C4MZQ0_9CAUD/248-316  AC C4MZQ0.1
#=GS G3MV48_9CAUD/248-316  AC G3MV48.1
#=GS Q06EG7_BPR32/246-324  AC Q06EG7.1
#=GS G0X5T2_9CAUD/246-324  AC G0X5T2.1
#=GS D7RMG3_9CAUD/248-316  AC D7RMG3.1
#=GS E5DIH4_9CAUD/246-320  AC E5DIH4.1
#=GS Q6L662_9CAUD/246-324  AC Q6L662.1
#=GS D4Z9W0_BPAR1/246-324  AC D4Z9W0.1
#=GS E5FIK8_9CAUD/249-319  AC E5FIK8.1
#=GS F2VXL6_9CAUD/246-326  AC F2VXL6.1
#=GS D9IEJ1_BPT4/246-326   AC D9IEJ1.1
#=GS E3SEX6_9CAUD/249-322  AC E3SEX6.1
#=GS VG12_BPT4/246-326     AC P10930.3
#=GS VG12_BPT4/246-326     DR PDB; 1H6W A; 246-326;
#=GS G1FH83_9CAUD/246-326  AC G1FH83.1
#=GS C3V2E7_BPR51/246-324  AC C3V2E7.1
#=GS Q38160_BPT2/246-326   AC Q38160.1
#=GS Q5QBZ3_9CAUD/248-316  AC Q5QBZ3.1
#=GS C3V1M0_9CAUD/246-324  AC C3V1M0.1
Q7Y2B4_BPR69/246-324             ....TGETLNGRGATGSMRGVVKLTTQAGVAPEGDSSGALAWNADVINTRGGQTINGSLNL-DHLT-ANGIWSRGGMWKNGDQPV............
Q8JU38_BPAR1/246-324             ....TGGTLNGRGATGSMRGVVKLTTQAGIAPEGDSSGALAWNADVINTRGGQTINGSLNL-DHLT-ANGIWSRGGMWKNGDQPV............
C4MZQ0_9CAUD/248-316             .tpa---SLLARTGNTGRIGLVRLSTTVG---QGDGNTALAYNANVISTSGGE-IWGTLNVNGTLR-RNGVD-------------vvthdq......
G3MV48_9CAUD/248-316             .tpa---SLLARTGNTGRIGLVRLSTTVG---QGDGNTALAYNANVISTSGGE-IWGTLNVNGALR-RNGV--------------dvvthdq.....
Q06EG7_BPR32/246-324             ....TGETLNGRGATSSMRGVVKLTTQAGIAPEGDGSGALAWNADVINTRGGQTINGSLNL-DHLT-ANGIWSRGGMWKNGDQPV............
G0X5T2_9CAUD/246-324             ....TGETLNGRGATGSMRGVVKLTTQAGIAPEGDSSGALAWNADVINTRGGQTINGSLNL-DHLT-ANGIWSRGGMWKNGDQPV............
D7RMG3_9CAUD/248-316             ..sp--STLLSRTGTTGRLGVVKLSTTVGS---GDGNTALAYNANVISTTGG-TINGTLNVNGNLR-RNG---------------rdvvtidq....
E5DIH4_9CAUD/246-320             ..tp--NGLNQRVGTTSTKGLVKLTTTVGS---GDANTALAYNADVVHTRGGQTINGNTTF-GTAR-VNGRLDMG----------sgfinnqqi...
Q6L662_9CAUD/246-324             ....TGETLNGRGATGSMRGVVKLTTQAGIAPEGDSSGALAWNADVINTRGGQTINGSLNL-DHLT-ANGIWSRGGMWKNGDQPV............
D4Z9W0_BPAR1/246-324             ....TGETLNGRGATGSMRGVVKLTTQAGIAPEGDSSGALAWNADVINTRGGQTINGSLNL-DHLT-ANGIWSRGGMWKNGDQPV............
E5FIK8_9CAUD/249-319             tpqa----LHAKTGNTGRLGIVKLTTTVGS---GDGNTALAYNANVISTTGG-TINGTLNVNGTLR-RNGQ--------------dvvtrnelk...
F2VXL6_9CAUD/246-326             ....TGATLNGRGSTTSMRGVVKLTTTAGSQSGGDASSALAWNADVIHQRGGQTINGTLRINNTLTIASGGANITGTVNMTGGYI............
D9IEJ1_BPT4/246-326              ....TGATLNGRGSTTSMRGVVKLTTTAGSQSGGDASSALAWNADVIHQRGGQIIYGTLRIEDTFTIANGGANITGTVRMTGGYI............
E3SEX6_9CAUD/249-322             tpqa----LQAKTGNTGRLGIVKLTTTVGS---GDGNTALAYNANVISTTGG-TITGTLNVNGTLR-RNGQ--------------dvvtrneikddv
VG12_BPT4/246-326                ....TGATLNGRGSTTSMRGVVKLTTTAGSQSGGDASSALAWNADVIQQRGGQIIYGTLRIEDTFTIANGGANITGTVRMTGGYI............
#=GR VG12_BPT4/246-326     SS    ....-HHHHTTSB--SSS--B-EEESSTT--BTTBSSEEE-TT-S---SS-----SS----SS-----SS----SS----S--EE............
G1FH83_9CAUD/246-326             ....TGATLNGRGSTTSMRGVVKLTTTAGSQSGGDASTALAWNADVIHQRGGQTINGTLRINNTLTIASGGANITGTVNMTGGYI............
C3V2E7_BPR51/246-324             ....TGETLNGRGATGSMRGVVKLTTQAGIAPEGDSSGALAWNADVINTRGGQTINGSLNL-DHLT-ANGIWSRGGMWKNGDQPV............
Q38160_BPT2/246-326              ....TGATLNGRGSTTSMRGVVKLTTTAGSQSGGDASSALAWNADVIHQRGGQTINGTLRINNTLTIASGGANITGTVNMTGGYI............
Q5QBZ3_9CAUD/248-316             .tpa---SLLARTGNTGRIGLVRLTTTVG---QGDGNTALAYNANVISTSGGE-IWGTLNVNGALR-RNGV--------------dvvthdq.....
C3V1M0_9CAUD/246-324             ....TGETLNGRGATGSMRGVVKLTTQAGIAPEGDSSGALAWNADVINTRGGQTINGSLNL-DHLT-ANGIWSRGGMWKNGDQPV............
#=GC SS_cons                     ....-HHHHTTSB--SSS--B-EEESSTT--BTTBSSEEE-TT-S---SS-----SS----SS-----SS----SS----S--EE............
#=GC seq_cons                    ....TGtTLNGRGuTTSMRGVVKLTTTAG.tstGDuSoALAWNADVIsTRGGQTINGoLNl.ssLT.ANGhhshsGhhp.sst.l............
//
DBGET integrated database retrieval system