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Database: Pfam
Entry: gpD
LinkDB: gpD
Original site: gpD 
#=GF ID   gpD
#=GF AC   PF02925.14
#=GF DE   Bacteriophage scaffolding protein D
#=GF AU   Griffiths-Jones SR
#=GF SE   Structural domain
#=GF GA   25.00 25.00;
#=GF TC   34.60 320.30;
#=GF NC   16.90 16.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   Bacteriophage_scaffolding_proteins
#=GF RN   [1]
#=GF RM   9305849
#=GF RT   Structure of a viral procapsid with molecular scaffolding. 
#=GF RA   Dokland T, McKenna R, Ilag LL, Bowman BR, Incardona NL, Fane BA,
#=GF RA   Rossmann MG; 
#=GF RL   Nature 1997;389:308-313.
#=GF DR   INTERPRO; IPR004196;
#=GF DR   SCOP; 1al0; fa;
#=GF SQ   15
#=GS A0A0E9NU03_9ASCO/581-721  AC A0A0E9NU03.1
#=GS A0A0N5C5A1_STREA/3-143    AC A0A0N5C5A1.1
#=GS A0A0F7U5B4_9EURO/3-143    AC A0A0F7U5B4.1
#=GS A0A0N4VWW8_HAEPC/3-143    AC A0A0N4VWW8.1
#=GS U4LC32_PYROM/3-143        AC U4LC32.1
#=GS A0A0E2J3K0_CHLPS/3-143    AC A0A0E2J3K0.1
#=GS A0A0A1P818_9FUNG/3-143    AC A0A0A1P818.1
#=GS A0A0K8JK47_9FIRM/3-143    AC A0A0K8JK47.1
#=GS U2R7A9_9FIRM/3-143        AC U2R7A9.1
#=GS A0A0N4UTJ5_ENTVE/3-143    AC A0A0N4UTJ5.1
#=GS W1SAJ3_9BACI/3-143        AC W1SAJ3.1
#=GS D_BPPHS/3-143             AC P69486.2
#=GS D_BPPHS/3-143             DR PDB; 1TX9 A; 4-143;
#=GS D_BPPHS/3-143             DR PDB; 1CD3 3; 5-143;
#=GS D_BPPHS/3-143             DR PDB; 1CD3 2; 6-140;
#=GS D_BPPHS/3-143             DR PDB; 1AL0 2; 6-138;
#=GS D_BPPHS/3-143             DR PDB; 1CD3 4; 7-143;
#=GS D_BPPHS/3-143             DR PDB; 1CD3 1; 6-143;
#=GS D_BPPHS/3-143             DR PDB; 1AL0 3; 5-143;
#=GS D_BPPHS/3-143             DR PDB; 1AL0 1; 6-143;
#=GS D_BPPHS/3-143             DR PDB; 1AL0 4; 7-143;
#=GS D_BPPHS/3-143             DR PDB; 1TX9 B; 6-135;
#=GS A0A0N4Z2Y7_PARTI/3-143    AC A0A0N4Z2Y7.1
#=GS A0A0M3HGE9_ASCLU/3-143    AC A0A0M3HGE9.1
#=GS U7U8J5_9BURK/3-143        AC U7U8J5.1
A0A0E9NU03_9ASCO/581-721             QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
A0A0N5C5A1_STREA/3-143               QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
A0A0F7U5B4_9EURO/3-143               QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
A0A0N4VWW8_HAEPC/3-143               QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
U4LC32_PYROM/3-143                   QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
A0A0E2J3K0_CHLPS/3-143               QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
A0A0A1P818_9FUNG/3-143               QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
A0A0K8JK47_9FIRM/3-143               QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
U2R7A9_9FIRM/3-143                   QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
A0A0N4UTJ5_ENTVE/3-143               QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
W1SAJ3_9BACI/3-143                   QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
D_BPPHS/3-143                        QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
#=GR D_BPPHS/3-143             SS    XXHHHHHHHHHHHHHHHHHHHSSCTS--HHHHHHHHSSS---GGGHHHHHHHHHHHHHHHHHHTT--SSSBBHHHHHHHHHHHS-HHHHHHHHHHHTTSBSHHHHHCTCEEBB-HHHHHHHHHHHHCTCTTTTHHCCHHHH
A0A0N4Z2Y7_PARTI/3-143               QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
A0A0M3HGE9_ASCLU/3-143               QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
U7U8J5_9BURK/3-143                   QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
#=GC SS_cons                         XXHHHHHHHHHHHHHHHHHHHSSCTS--HHHHHHHHSSS---GGGHHHHHHHHHHHHHHHHHHTT--SSSBBHHHHHHHHHHHS-HHHHHHHHHHHTTSBSHHHHHCTCEEBB-HHHHHHHHHHHHCTCTTTTHHCCHHHH
#=GC seq_cons                        QVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVR
//
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