KEGG   Pseudomonas fluorescens A506: PflA506_0517
Entry
PflA506_0517      CDS       T02114                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pfc  Pseudomonas fluorescens A506
Pathway
pfc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PflA506_0517 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfc03019]
    PflA506_0517 (rnr)
   03016 Transfer RNA biogenesis [BR:pfc03016]
    PflA506_0517 (rnr)
Enzymes [BR:pfc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     PflA506_0517 (rnr)
Messenger RNA biogenesis [BR:pfc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PflA506_0517 (rnr)
Transfer RNA biogenesis [BR:pfc03016]
 Prokaryotic type
  tRNA degradation factors
   PflA506_0517 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 RNase_II_C_S1 OB_Dis3 SRP-alpha_N
Other DBs
NCBI-ProteinID: AFJ59741
Position
598284..600911
AA seq 875 aa
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEV
LITPGRNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV
WPDAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRTEYAGVVP
HLKQLYSLYKVLLGARHTRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA
SIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVQVMRVDLDERKIDFGMPDKPAEPAGRKKRGETTAPASKGKATTAKTTAE
PAPAKAGRRSSAKDKAPEAYRPSDAAAKNAELRKSRELKQQLLNEAKSGGKAASGGKSHG
AEKPSSKPSKHRKGPPKAGSAPAKSGGSRKPKAKS
NT seq 2628 nt   +upstreamnt  +downstreamnt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatcctggcgcacctcgccgatcgtggttcgcctgctagc
cgcgagcagttggtcgaagaattcggtctgaccaccgaagaccagctcgaagccctgcgc
cgccgtttgcgtgcgatggagcgcgatgctcaattgatctacacccgtcgtggcacttac
gcgccggtagacaagctcgacctgatcctgggccgcattgccggccaccgcgacggcttc
ggcttcctgataccggacgatggcagcgacgacctgttcatgagcccggcgcaaatgcgt
ctggtgttcgatggcgaccgtgccctggcgcgggtttctggcctcgaccgccgtggtcgt
cgtgaaggcgtgatcgtcgaagtggtgtcccgtgcccacgaatctatcgtcggccgttac
tttgaagaaggcggcatcggcttcgttgtgccggataaccccaaggtccagcaggaagtg
ctgatcaccccgggccgcaatggcgccgccaaggtcggccagttcgtcgaggtgaaaatc
acccactggcctactgcgcgcttccagccccagggcgatatcgtggaggtggtcggcaac
tatatggcgccgggcatggaaatcgacgttgccttgcgcacctacgatattcctcacgtc
tggcctgatgccgtgctcaaggaagccgccaagctcaagccggaagtcgaagagaaagac
aaagaaaaacgtatcgacctgcgccatctgccgttcgtcactattgacggcgaagatgcc
cgcgacttcgacgatgcggtctactgcgaagccaagcctggcaagctgcgcctgttctcc
ggcggttggaagttgtacgtcgcgattgccgacgtctccagttacgtgaagatcggttcg
gccctggataacgaagcccaggtgcgcggcaactccgtgtacttcccagagcgcgtgatc
ccgatgctgcctgagcagctgtccaacggcctgtgctccctgaacccgaaagtcgaccgt
ttggccatggtgtgcgagatgaccatctccaaaaccggcgaaatgaccgactaccagttc
tacgaagcggtgatccactcccaggcgcgtctgacctacaacaaggtcagcaccatcctg
gaaacgccgaagaccagcgaagccaaggccctgcgtaccgagtacgctggcgtggtgccg
cacctcaagcagctttactcgctgtacaaggtgttgctgggtgcccgtcatacccgtggc
gcgatcgatttcgaaacccaggaaacccggattgtcttcggctccgagcgcaagattgcg
gcgatcaccccgaccacccgtaacgacgcgcacaagctgatcgaggagtgcatgctggcg
gccaacgtggccactgccgagttcctcaagaagcacgaaattcctgcgttgtaccgtgtg
cacgacggcccgccgccggagcgcctggaaaaacttcgcgccttcctcggcgaactcggc
ctgtccctgcacaaaggcaaggatggtcctacgcctaaggattaccaggccctgctggcc
agcatcaaggaccgtccggattaccacgtgatccagaccgtgatgctgcgatccctgagc
caggcggtgtacagcgccgataaccagggccacttcggcctgaattacgaggcgtacacc
cacttcacttcgccgattcgccgctacccggacttgctcacgcaccgggcgatccgcagc
gtgatccattccaagcagaacaccccgcacgtcaagcgcgccggtgccatgaccattccg
aaagcacggatctatccgtacgacgaagcggccctggaacagctgggtgagcagtgctcc
atgagcgagcgccgcgccgacgaagccacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaggatcgcgtgggcgaatcgttcccgggtgtgatcaccgccgtgaccggcttt
ggcctgttcgtcgagctgaccgacatctacgtcgagggcctggtgcacgtcaccgccttg
ccgggtgattactaccacttcgatcctgtgcatcaccgcctggcgggcgagcgcaccggt
cgcagcttccgtctgggcgataccgttgaagtgcaggtcatgcgtgtcgacctcgacgag
cgcaagatcgacttcggcatgcctgacaagccggcagagcctgcgggtcgtaaaaaacgt
ggtgaaaccacagcgcctgcgtccaaaggcaaagcgaccactgcaaaaaccacggccgag
cctgcacctgccaaggccggtcgtcgttcttccgccaaggacaaggcccctgaagcctac
cgcccaagcgacgctgcggcgaaaaacgccgagctgcgcaagagccgcgagttgaagcag
cagttgctcaacgaagccaaaagcggtggtaaagcggcgtctgggggaaagtctcacggg
gcggaaaagccgtcgagcaagccaagtaaacaccgtaaaggcccgccaaaagcgggttcg
gctcccgcaaaaagcggcgggtcgcgcaaacctaaggccaagtcatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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