KEGG   Pseudomonas fluorescens A506: PflA506_4021
Entry
PflA506_4021      CDS       T02114                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
pfc  Pseudomonas fluorescens A506
Pathway
pfc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PflA506_4021 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfc03019]
    PflA506_4021 (rne)
   03009 Ribosome biogenesis [BR:pfc03009]
    PflA506_4021 (rne)
Enzymes [BR:pfc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     PflA506_4021 (rne)
Messenger RNA biogenesis [BR:pfc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PflA506_4021 (rne)
Ribosome biogenesis [BR:pfc03009]
 Prokaryotic type
  rRNA processing factors
   PflA506_4021 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 TcdA_TcdB
Other DBs
NCBI-ProteinID: AFJ55435
Position
4446264..4449431
AA seq 1055 aa
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EAAAPVAAPAALPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATERPARNEERRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREERAPREAREDTPTVAREERAPREERAPRTPR
VPREDRKPRGEREERVRELREPLDAAPAAAAAVSTEERPARQPREERAPREERQPRPPRE
ERQPRAEQAAAATEEEVLTGEEQLQEDGQDNAEGDRPRRRSRGQRRRSNRRERQRDANGN
VIEGSEETGENAEAANNEPTGAELAAGLAVTAAVASSVISAPAEAQAHEQAERATAAVED
TVAVEAPAAETPAVEAPVVEAPVVEAPVVEATTPVEAPVVPEVEVAPVRDARPETEAVAV
EPAPVVEPQPVVEAAVEAPAVEEAAPAVREVREEQTAFQWTAEPAAPVEAPTPAPVVEEA
PAPVAEVVAEPAPVVEPTPVVEPAAVVEVEAPVVAEVAAPVVEAAPASALTENGRAPNDP
REVRRRRKEAEAAAAAAKAVEHEAQEAEHEPKPLV
NT seq 3168 nt   +upstreamnt  +downstreamnt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaaaaaggccaac
atctataaaggccgtatcactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgaaaaagaagaacgtggcaacaagggcgcggccctgaccaccttcatcagcctc
gccggtcgttacctggtgctgatgccgaacaacccacgtgccggcggtatttcccgtcgc
atcgaaggcgaagagcgtaacgaactgcgtgaagcgctgaacggcctgatcgcaccggcc
gacatgggcctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgctatcaaagaagcgtccctggatcgttcc
gcgccgttcctgatctaccaggaaagcaacgtgatcatccgtgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gaactgccttccggcggctccatcgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcacgtgcgaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggctgaagaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtgatcgacttcatcgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtc
cgcgagtgcctggaagctgaccgcgctcgcgtgcaagtcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatccctgggcgagagcagcggcatcgtc
tgcccgcgttgcaacggcaccggcatcatccgtgacgttgaatcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgtaccgccgaagttcgcgcccaagtg
ccgattccggttgccgccttcctgctcaatgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgtatcgtcatcctgccgaacgatcacctcgaaacgccgcacttc
gaagtccagcgcctgcgtgacgacagcccggaagcccatagcgggcagtccagctatgaa
atcgccgcggctgccgccgaagtcgaagaagtccagccagccgctgcgacccgcaccctg
gttcgccaggaagccgcggtgaagactgcaccggcccgtgccaacgcaccggtaccgacc
gaagctgccgccccggttgccgcgccggccgccctgcctgagccaagcctgttcaagggc
ctggtgaagtcgctggtcagcctgttcgccaccaaggaagagcctgctgccccggttgtg
gttgaaaaacctgccaccgagcgcccggcgcgcaacgaagaacgtcgcaacggtcgccag
cagagccgtaaccgcaacggccgccgtgacgaagagcgcaagcctcgcgaagaacgtgcc
ccgcgtgaagaacgcgcaccacgtgaagagcgtgcgcctcgcgaagcccgtgaagacacc
ccgaccgtcgcccgtgaagaacgtgcaccgcgtgaagagcgcgccccacgtaccccacgc
gttccacgtgaagaccgcaagccacgtggcgagcgtgaagaacgcgtgcgtgaactgcgc
gagcctctggacgcggcacctgccgctgccgcagccgttagcaccgaagagcgcccggcc
cgccagccgcgtgaagaacgcgcgccacgcgaagagcgccaaccgcgcccgccacgtgaa
gagcgtcaaccacgcgccgagcaagccgctgctgccaccgaagaagaagtactgaccggc
gaagagcagttgcaggaagacggccaggacaacgccgaaggcgatcgtccacgccgccgc
tcccgcggccagcgtcgtcgcagcaaccgtcgtgagcgtcagcgtgatgccaacggcaac
gtaatcgaaggttcggaagaaaccggcgagaacgcagaagctgccaacaacgagccaaca
ggcgccgaactggctgccggcttggccgttaccgctgccgttgccagttcggtcatcagc
gcccctgctgaagcccaggctcacgagcaagccgaacgtgctaccgctgccgtcgaagac
actgttgccgtagaagcgccagccgccgaaaccccagcggttgaagcgccggttgttgaa
gcgccggttgttgaagcgccagtcgttgaagccacaacccctgtcgaagccccagtggtt
ccggaagtggaagttgccccggttcgcgacgcacggccagaaactgaagcggttgccgtt
gaaccggctccagtggttgagcctcagccagtagtcgaagcggctgtagaagctccggcg
gtcgaagaagctgccccggctgtgcgtgaagttcgcgaagaacagaccgccttccagtgg
actgccgaaccggctgcaccggttgaagcgccaacacctgccccagtggtagaagaagca
ccggcaccggttgctgaagtcgtcgccgagccagctccagtggttgagccgacgccggtt
gtggagcctgcggccgtggttgaagttgaagccccggtggttgccgaagtggccgcccct
gtggttgaagctgcgcctgcaagcgccctcaccgaaaacggccgtgcgccgaatgaccca
cgtgaagtgcgtcgtcgccgcaaggaagccgaagctgctgcagccgcagccaaggcggta
gagcacgaggcccaggaagcagagcacgagcctaaacccctcgtctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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