KEGG   Pseudomonas ogarae: PSF113_5677
Entry
PSF113_5677       CDS       T01734                                 
Symbol
rho
Name
(GenBank) Rho
  KO
K03628  transcription termination factor Rho
Organism
pfe  Pseudomonas ogarae
Pathway
pfe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PSF113_5677 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfe03021]
    PSF113_5677 (rho)
   03019 Messenger RNA biogenesis [BR:pfe03019]
    PSF113_5677 (rho)
Transcription machinery [BR:pfe03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     PSF113_5677 (rho)
Messenger RNA biogenesis [BR:pfe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     PSF113_5677 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 OB_RNB AAA_22 NACHT Spore_III_AA AAA
Other DBs
NCBI-ProteinID: AEV65649
Position
complement(6548948..6550207)
AA seq 419 aa
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKATKTNDEFFLSMKRK
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaag
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttccttcgctccgcagacgcttcctatctcgccggcccagacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttacttcgcgctgctcaaggtcgacacgatcaac
ttcgatcgtccggaaaacgcgaagaacaagattctcttcgagaacctgacgccgctgttc
ccgaccgtgcgcatgaagatggaagccggcaacggttccaccgaagacctcaccggtcgt
gtcatcgacctgtgcgcacccatcggcaaaggccagcgtggcctgatcgtggcaccgccg
aaagcgggcaagacgatcatgctgcagaacatcgcggccaacatcgcccgtaacaaccct
gaagttcacctgatcgtgttgctgatcgatgagcgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgacgttcgacgaaccgccgacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaagacgtg
gtgatcctgctggactccatcacccgtctggcccgtgcctacaacaccgtgatcccaagc
tccggcaaggtgctgactggtggtgtcgatgctcacgcgctggaaaaaccgaagcgtttc
ttcggtgccgcacggaacatcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
gttgaaaccggttcgaagatggacgaggtgatctacgaggaattcaagggcaccggcaac
atggagctgcctctggatcgtcgtatcgccgagaagcgtgtgttcccggctatcaacatc
aaccgctccggcacgcgccgcgaagagttgctgaccgccgacgacgagttgcagcgcatg
tggatcctgcgcaagttgctgcatccgatggatgaagtcgctgccatcgagttcctggtc
gacaagctgaaggcgaccaagaccaacgatgagttcttcctgtcgatgaaacgcaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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