KEGG   Pandoraea faecigallinarum: AB870_01155
Entry
AB870_01155       CDS       T03972                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
pfg  Pandoraea faecigallinarum
Pathway
pfg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pfg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AB870_01155
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfg03400]
    AB870_01155
Enzymes [BR:pfg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AB870_01155
DNA repair and recombination proteins [BR:pfg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      AB870_01155
SSDB
Motif
Pfam: TRCF DEAD MFD_D3 UvrB_inter Helicase_C CarD_TRCF_RID ResIII UB2H SNF2-rel_dom Glyco_tran_WecG AAA_30 AroM
Other DBs
NCBI-ProteinID: AKM29031
UniProt: A0A0H3WR31
Position
2921816..2925280
AA seq 1154 aa
MSSANALSRSTVPVPLVKAGQRYAFAGSHASSDALLIARYFEENRDRLPLLAVVCAQATD
ALRLQQELKWCAPDLSVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEKRCDIVLVPA
TTALYRMAPASFMAAYTFFFTQGERLDEARLKSQLTLAGYEHVSQVMRPGEYCVRGGLID
LYPMGSALPYRLDLFDDTIDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEPARTAFRGR
WREVFEGDPSRSPIYKDIGSGVPSAGIEYYLPLFFEETATLFHYLPADAQLVFIGDLDAA
IGRFWNDTRQRYNFLSHDRERPVLPPEQLFLLDQDFFALAKPFARLTLPTPGDGSWAIPL
PPLAINRRADDPLAALRAYLARTPARVLLCADSAGRRETLLQLLHDNDLRPASVESLEDF
LTSDKRFCIGVAPLAAGFLLPTEDLAFVTENELYEGLARRAGKRRQEQATSVDSMVRDLA
ELKVGDPVVHSQHGIGRYQGLVSMDLGEGETEFLHLEYSGESKLYVPVSQLHLISRYSGS
DPDTAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGYAFELSPRDYEKFAD
SFGFEETPDQAAAIAAVMSDMTSGRPMDRLVCGDVGFGKTEVALRAAFIAVLDGKQVAIL
APTTLLAEQHAQTFSDRFADWPVRIAELSRFKTAKEVNASVKAINEGQVDIVIGTHKLLS
NDIQFQRLGLVIIDEEHRFGVRQKEALKALRAEVDMLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRKAQLEALVPE
ARIVVAHGQMHERDLERVMRDFVTQRANVLLCTTIIETGIDVPTANTILMHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPKSLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRGA
GEVLGDKQSGEIHEIGFQLYTDMLADAVSALKAGREPDLNAPLAATTEINLHVPAILPSD
YCGDVQERLSLYKRLANGTHTDAIDTIQEELVDRFGKLPQQAQALIETHRLRLLAKPLGI
VKIDASEEAIALQFEPTPCVDPMRIIELVQKHRHIKLAGQDKLRIEAKHAQLTDRVRAIK
ETLRALGSPGAKAA
NT seq 3465 nt   +upstreamnt  +downstreamnt
atgtcctccgccaacgccttatcccgtagtaccgtgcctgtgccgctcgtgaaagcggga
cagcgttacgccttcgccggctcgcatgcgtcgagcgacgccctgctcatcgcccgttat
ttcgaggaaaatcgcgatcgcctgccgctgctcgccgtcgtctgcgcgcaggcgaccgac
gcgctgcgccttcagcaggaactcaaatggtgcgcgccggacctgagcgtgcgtctgctg
cccgattgggaaacgctgccctacgacaccttctcgccgcaccaggatctcgtctccgag
cgacttgccacgctgcacgatctgggcgaaaagcgctgcgatatcgtgctggtgcccgcc
accacggcactctatcgcatggcccccgcgagcttcatggcggcctacacgttcttcttc
acgcagggcgaacggctcgacgaagcgcgtctgaagtcgcaattgacgctcgcgggctac
gaacacgtcagccaggtgatgcgtcccggcgagtactgcgtgcgcggcgggctgatcgat
ctttacccgatgggctctgcactgccctatcgtctcgatctgttcgacgacaccatcgac
agtattcgcgcgttcgaccccgatacgcagcgcagtctgtatccggtcaaggacgtgcgt
ctgctgcccgggcgcgaattcccgttcgacgaacccgcgcgcacggccttccggggacgc
tggcgcgaagtcttcgagggggacccgagccgcagcccgatctacaaggacatcggcagc
ggcgtgccctcggcagggatcgaatactacctgccgctgtttttcgaagagacggccacg
ctctttcactacctgcccgccgacgcccaactcgtattcatcggcgatctggacgcggcc
atcggccgcttctggaacgacacgcgccagcgctataacttcctgtcgcacgatcgggag
cggccggtgttaccgccggagcaactgttcctgctcgatcaggacttcttcgcactcgcc
aaaccgttcgcgcgcctgacgctgcccacgccgggcgatggcagctgggcgatcccgctg
ccgccgctggcgatcaaccgtcgggccgacgatccgctcgccgccctgcgcgcatacctc
gcccgcacgccggcccgggtacttctgtgcgccgactcggccgggcgtcgcgagacgctg
ctgcaactgctgcacgacaacgatctccggccggcgagcgtggagtcgctggaagatttt
ctgacgtccgacaagcgcttttgtatcggcgtcgccccgctggccgcgggctttctgtta
ccgacggaagatctggcgttcgtcaccgaaaacgagttgtacgaaggcctcgcacgccgt
gcgggcaagcgccgtcaggagcaggcgacctccgtcgattcgatggtgcgcgatctcgcc
gagttgaaggtcggtgaccccgtggtccacagtcagcacggcatcggccgttatcaaggc
ctcgtcagcatggacctgggcgaaggcgaaacggaattcctgcatctcgaatactcgggc
gagagcaagctatacgtgccggtctcccaattgcatctgatctcgcgttacagcggctcg
gaccccgacaccgcgccgctgcattcgctgggctccggacagtgggagaaggccaagcgc
aaggccgcacaacagattcgcgacaccgcggccgaactgctcaatctctatgcgcgccgc
gccgcgcgctcgggctatgcgttcgaactgtcgccgcgcgactacgagaagttcgccgac
agcttcggtttcgaagaaacgccggatcaggcagctgccatcgccgcggtgatgagcgac
atgacgagcggccggccgatggaccgtctggtctgcggggacgtcggcttcggcaagacc
gaagtcgcactgcgcgccgccttcatcgccgtactcgacggcaagcaggtcgccattctc
gcgcccaccacgctgctcgccgagcagcacgcgcagaccttctccgaccgtttcgccgac
tggcccgtgcgtatcgccgaactctcgcgcttcaagaccgcgaaggaagtcaatgccagt
gtgaaagccatcaacgaaggtcaggtcgacatcgtgatcggcacgcacaagctgctctcg
aacgacatccagttccagcggctcgggctcgtgatcatcgacgaggaacatcgcttcggc
gtccgtcagaaggaagccctcaaggcgctgcgcgcggaagtcgacatgctcacgctgacc
gccacgccgatcccgcgtacgctgggcatggcgctggagggattgcgcgacttctcggtg
attgcaaccgcgccgcaaaagcgtctggcgatcaagaccttcgtgcggcgcgaagaagac
ggcgtgatccgcgaagccatgctgcgcgaactcaagcgcggcggtcaggtgtacttcctg
cacaacgaagtggagacgatcgagaaccgcaaggcgcaactcgaagcgctcgtgccggaa
gcacgtatcgtggtcgcgcacggccagatgcacgagcgcgacctcgaacgcgtcatgcgc
gacttcgtcacgcagcgcgccaacgtgctgctgtgcacgaccatcatcgagacgggcatc
gacgtgccgaccgccaacacgatcctgatgcatcgcgccgacaagttcggtctcgcgcaa
ttgcaccagttgcgtggccgcgtgggccgctcgcaccatcaggcctacgcctatctgctc
gtacacgatccgaagtcgctcacgaagcaggcgcagcggcgtctcgaagccattcagcag
atggaggaactcggcgccggcttctatctggcgatgcacgatctggagattcgcggtgcg
ggcgaggtactcggcgacaagcagtcgggcgagattcacgagatcggcttccagctctat
accgacatgctcgccgacgccgtgagcgctctgaaggcggggcgcgagcccgatctcaac
gcaccgctcgccgccaccacggagatcaatctgcacgtgcccgcgatcctgccgagcgac
tactgcggcgacgtgcaggagcgtctctcgctgtacaagcggctggccaacggcacgcac
accgacgccatcgacacgattcaggaagaactcgtcgaccgtttcgggaagctaccgcag
caggcgcaggcgctcatcgaaacgcaccgcctgcgtctgctggccaagccgctgggcatc
gtcaagatcgacgcgagcgaggaagccatcgcgctgcaattcgaaccgacgccctgcgtc
gatccgatgcgcatcatcgagctcgtgcaaaagcatcgccacatcaagctggccggacag
gacaagctgcgcatcgaagccaaacatgcgcagctcaccgaccgggtccgcgcgatcaag
gaaacgctgcgcgcgctggggtcccccggtgcgaaggccgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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