KEGG   Pseudomonas frederiksbergensis: PFAS1_20755
Entry
PFAS1_20755       CDS       T04786                                 
Name
(GenBank) hypothetical protein
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
pfk  Pseudomonas frederiksbergensis
Pathway
pfk03030  DNA replication
pfk03430  Mismatch repair
pfk03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pfk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PFAS1_20755
   03430 Mismatch repair
    PFAS1_20755
   03440 Homologous recombination
    PFAS1_20755
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfk03032]
    PFAS1_20755
   03400 DNA repair and recombination proteins [BR:pfk03400]
    PFAS1_20755
Enzymes [BR:pfk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PFAS1_20755
DNA replication proteins [BR:pfk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PFAS1_20755
DNA repair and recombination proteins [BR:pfk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PFAS1_20755
SSDB
Motif
Pfam: DNA_pol3_delta2 DNA_pol3_gamma3 DNA_pol3_tau_5 AAA RuvB_N AAA_22 AAA_5 AAA_16 ResIII AAA_14 TIP49 AAA_18 AAA_30 AAA_19 AAA_2 PIF1 TsaE nSTAND3 HasA AAA_7 SKI AAA_24 Rad17 zf-CXXC Mg_chelatase Herpes_Helicase
Other DBs
NCBI-ProteinID: APV41665
UniProt: A0A1P8EZM5
Position
4469829..4471868
AA seq 679 aa
MSYQVLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAK
CLNCETGITSTPCGECSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRF
KVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTP
ERVVEHLTHVLSVENVPFEEDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVMAADVRAM
LGTLDHGQVYDVLHALIEGDAKALLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPE
GVDNGHGDRDRVLALAQALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEMVLLRMLAFRP
ADTADAPRQPLKTVGISQATVDSANSVAAAQVVAPVVAVAVAPVAPEPVAPVVAPEPVVD
AAPVEAVVDLPWNDPIEPEVVQQPAVEPVLETASEQPELPPMPLPTPDSAVPDAPEWAAA
PIPEPSVADVDAATPGMDLDDEPPLDEDYIEPDMESAYSYLDELASEHTAEPAPEAEPEP
AAMPATGLAAQWLELFPKLPISGMTGSIAANCTLIAVEGDNWLMHLDPAHSALFNATQQR
RLNDALNQFHGRTLTLRMELIKPEQETPAQAASRRRANRQREAEESIHGDPFIQQMMQQF
GAVVRNDTIEPVETLVTQG
NT seq 2040 nt   +upstreamnt  +downstreamnt
atgagttatcaggttcttgcacgtaaatggcgtccgcgctcgttccgcgaaatggtcggc
cagacccatgtgctcaaggctctgatcaatgccttggacagccagcggctgcaccacgcc
tatctgtttaccggcacccgcggggtcggcaagaccactatcgcgcggatcatcgccaaa
tgcctgaactgtgaaacaggcatcacttcaacgccttgcggcgagtgctcggtgtgtcgc
gagatcgatgaaggccgcttcgtcgacctgatcgagatcgacgccgcgagccggaccaag
gtcgaggatacccgcgaactgctggacaacgttcagtacgcgccgagccgcgggcgcttc
aaggtctacctgatcgacgaagtgcacatgctctccagccattccttcaatgcgctgttg
aaaacccttgaagagccgccgccctacgtcaagttcatcctggcgaccaccgatccgcag
aaacttccggcaacgattctttcgcggtgcctgcagttctctttgaaaaacatgactccc
gagcgcgtggtcgagcatttgacccacgtgctgagtgtcgagaacgtgccgttcgaagag
gatgcactgtggttgctgggccgtgctgccgacggttcgatgcgcgacgccatgagcctg
accgaccaggccattgccttcggtgaaggcaaagtcatggctgccgacgtacgggcgatg
cttggcacgctcgatcacggtcaggtctacgatgtcctgcatgcgctgatcgaaggcgac
gccaaggccttgctcgaagccgtccgtcacctggccgaacaaggcccggactggaacggc
gtgctttcggaaattctcaacgtgctgcaccgtgtcgccatcgcccaggccctgcctgaa
ggcgtcgacaacggtcatggcgaccgtgaccgggtgctggcattggcccaggcattgccg
gccgaagacgtgcagttctattaccagatgggcctgatcggtcgccgcgacttgccgctg
gcgccggaccctcgcggcggcttcgaaatggttctgttgcggatgctggcgttccgcccg
gcagacaccgcggacgccccgaggcaaccgctaaagacagtggggatcagccaggccaca
gttgattccgcaaattcagtggctgccgcgcaggttgttgcgccggtagtcgctgtggca
gttgcacccgttgcgcctgagccggttgcgcccgtcgttgcgcctgagcctgtcgttgac
gcagcaccggtcgaagccgttgtcgatttgccctggaacgacccgatagaacccgaagtc
gttcagcagcctgccgtcgagccggtgctggaaaccgcgagcgaacagcccgaattgccg
ccgatgcctttgccgacgccggacagcgcggtgcctgacgcgccggagtgggccgctgcg
ccgattccagagccgtcggtggccgacgtcgatgccgcgacgccgggtatggacctggac
gacgagccgccgctggacgaggactatatcgagccggacatggagtcggcttacagctac
ctcgatgaactggccagcgaacacaccgccgagcctgcgccggaagccgaacctgaaccg
gccgccatgccggccaccggtctggcggcgcaatggctggagctgttcccgaaactgccg
atctccggcatgaccggcagcatcgccgccaactgcacgctgatcgccgtcgagggtgac
aattggctgatgcacctcgacccggcccacagcgcgctgttcaacgcgactcaacagcgc
cgcttgaacgatgccttgaaccagtttcacgggcgtacgctgaccttgcgcatggagctg
atcaagcccgagcaggaaaccccggcccaggccgcgtcccgtcgccgtgcgaaccgtcag
cgcgaagccgaagagtcgattcacggtgatccgttcatccagcaaatgatgcagcagttc
ggtgcggtggtccgtaacgatactattgaacctgtcgagaccctggtcactcagggctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (26)   
   Pfam (26)   
All databases (39)   

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