KEGG   Pseudomonas protegens Pf-5: PFL_0577
Entry
PFL_0577          CDS       T00249                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pfl  Pseudomonas protegens Pf-5
Pathway
pfl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PFL_0577 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfl03019]
    PFL_0577 (rnr)
   03016 Transfer RNA biogenesis [BR:pfl03016]
    PFL_0577 (rnr)
Enzymes [BR:pfl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     PFL_0577 (rnr)
Messenger RNA biogenesis [BR:pfl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PFL_0577 (rnr)
Transfer RNA biogenesis [BR:pfl03016]
 Prokaryotic type
  tRNA degradation factors
   PFL_0577 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 RNase_II_C_S1 TRAM_2 TRAM OB_Dis3 SRP-alpha_N
Other DBs
NCBI-ProteinID: AAY95984
UniProt: Q4KJ64
Position
671352..673979
AA seq 875 aa
MADWQSLDPEAAREAEKYENPIPSRELILQHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAKIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAGKLKPEVEEKDKEKRIDLRDLPFVTIDGEDARDFDDAVFCEAKPGKLRLFG
GGWKLYVAIADVSSYVKIGSALDAEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKSGEMTDYQFYEAVIHSKARLTYNKVSTMLEQPKTSEAKQLRGEYGDVLP
HLKQLYALYKVLLGARHTRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLE
TIKDRPDYHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQDTPHVRRAGAMTIPKARIYPYDEATLEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTINAPIGRKKRGAADAPASKVVEEPAPAKA
GRRSSAKEKAVEAYRPSDAAAKNAEVRKSREMKRALLAEAKGGGKATSAGKSGKPAPSRA
GEKPAKPSKHRKGPPKAGSASGAKSGGARKPKAKS
NT seq 2628 nt   +upstreamnt  +downstreamnt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cctattcctagccgcgaactcatccttcagcaccttgctgaccggggttcgcctgctagt
cgcgagcagttggtagaagagttcggtctgaccacggaagaccagctggaagccctgcgc
cgccgcctgcgcgccatggagcgcgacgctcaactgatctatacccgccgcggcacctat
gcgccggtggacaagctcgacctgattctcggccgtatcagcggtcaccgcgacggcttc
ggcttcctggtgccggatgacggcagcgacgacctgttcatgagcccggcgcaaatgcgt
ctggtattcgatggcgaccgcgccctggcccgggtttccggcctggatcgtcgcggccgt
cgcgaaggcgtgatcgtcgaagtggtgtcccgtgcccacgaaagcatcgtcggtcgctac
ttcgaagaaggtggcatcggtttcgtggtggcagacaacccgaagatccagcaggaagtg
ctggtaacgccggggcgcaatgccaatgccaagatcggtcagttcgtcgaagtgaagatc
actcactggccgacgccgcgcttccagccgcaaggtgatgtggtggaagtggtgggcaac
tacatggcaccgggcatggaaatcgatgttgccctgcgcacctacgatattcctcatgtc
tggcctgaggcggtgctcaaggaggccggcaagctcaagcccgaagtggaagagaaggac
aaagagaagcgcatcgatctgcgtgatctgcctttcgtcaccatcgacggcgaagacgcc
cgcgacttcgacgacgccgttttctgcgaagccaagcccggcaagctgcgcctgttcggt
ggtggctggaagctgtatgtggcgattgccgacgtctccagttacgtgaagatcggttcg
gctctggatgccgaagcccaggtgcgcggcaactcggtgtacttccccgagcgggtgatc
ccgatgctgcccgagcaactgtccaacggcctgtgctcgctgaacccgaaagtcgatcgc
ctggccatggtttgcgagatgaccatctccaagtccggcgagatgaccgattaccagttc
tacgaagcggtgatccactccaaggcgcgtctgacctacaacaaggtcagcaccatgctc
gagcagccgaaaaccagcgaagccaagcagttgcgcggtgaatacggcgatgtcctgccg
cacctgaagcagctgtatgcgctgtacaaggtcttgctgggggctcgtcatacccggggc
gccatcgacttcgagacccaggaaacccggatcatcttcggttccgagcgcaagatcgcc
gaaattcgtccgactacacgcaatgatgcgcacaagctgatcgaggaatgcatgctggcg
gccaacgtggccaccgccgagttcctcaagaagcacgagattccggccctgtaccgggtg
cacgatggtccgccgccggaacgtctggaaaaactgcgcgccttcctcggcgaactgggc
ctgtccctgcataaaggcaaggatggcccgacgccgaaggactaccaggcattgctggaa
accatcaaggaccgtccggattaccacctgatccagaccgtgatgctgcgctccctgagc
caggcggtgtacagcgctgataaccagggccacttcggcctgaattacgaagcctatacc
cacttcacttcgccgatccgtcgctacccggacctgttgacccatcgggccatccgcagc
gtcatccactccaagcaggacacgccgcacgtgcgccgcgccggggcgatgaccattccg
aaggcgcgtatctatccgtacgacgaagcgaccctggagcagctcggcgagcagtgctcg
atgagcgagcgccgtgccgatgaggctacgcgggacgtagtgaactggctcaagtgcgag
ttcatgaaggatcgtgtgggcgagtccttcccgggtgtgatcaccgcggtgaccggtttc
ggcctgttcgtcgagttgaccgacatctacgtcgagggcctggtgcacgtcaccgccttg
ccgggggactactaccacttcgaccctgtgcatcaccgcctggcgggcgagcgcaccggt
cgcagcttccgcctgggcgatactgtggaagtgcgtgtcatgcgcgtcgacctggacgag
cgcaagatcgatttcgaaatggccgagaagaccataaacgcaccgatcggccgcaagaag
cgtggcgccgcggacgcacctgccagcaaggtcgtggaagagccggctccagccaaggcg
gggcgtcgcagctccgccaaggaaaaggcggtcgaggcttatcgtccaagcgacgctgcc
gcgaaaaacgccgaagtgcgcaaaagccgcgaaatgaagcgggcgctgctggccgaagcc
aagggcggtggtaaagcgacgtctgcgggaaagtccggtaagccggcgccctcgcgcgct
ggcgaaaagcccgccaagccgagcaaacatcgtaaaggtccgcccaaggcgggctccgct
tccggcgctaaaagcggcggggcgcgcaaacctaaggccaagtcatga

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