KEGG P.fluorescens: PFL

Pseudomonas fluorescens Pf-5: PFL_5768

Entry

PFL_5768 CDS P.fluorescens

Gene name betA

Definition choline dehydrogenase (EC:1.1.99.1)

Orthology K00108 choline dehydrogenase [EC:1.1.99.1]

Pathway pfl00260 Glycine, serine and threonine metabolism

Class Metabolism; Amino Acid Metabolism; Glycine, serine and threonine
metabolism [PATH:pfl00260]

SSDB

Motif Pfam: GMC_oxred_N GMC_oxred_C DAO FAD_binding_2 Lycopene_cycl
Pyr_redox_2 Thi4 TrkA_N
PROSITE: GMC_OXRED_1 GMC_OXRED_2

Other DBs NCBI-GI: 70733053
NCBI-GeneID: 3480140
JCVI-CMR: PFL_5768
UniProt: Q4K4K7

Position 6570411..6572114

AA seq 567 aa
MAQEYDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGR
RYNWAYETDPEPHMNGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWTY
LDCLPYFRKAETRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTEDLNG
YQQEGFGPMDRTVTPKGRRASTARGYLDTAKKRSTLTIVTHALTDKILFEGKRAVGVSYL
QGSTEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQD
HLELYLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTGIGASNQFEAGGFIRTREEFEWP
NIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPSRGRVQLKSKDPRQHPSILFNYMATE
QDWQEFRDGIRLTREIMQQPALDPFRGREISPGIEVQTDEQLDKFVREHAETAFHPSCSC
KMGTDDMAVVDGQGRVHGMQGLRVVDASIMPIITTGNLNAPTIMMAEKIADKIRGRQPLP
RSTAAYYVAGEAPVRGKPMRDVTPAAQ

NT seq 1704 nt +upstreamnt +downstreamnt
atggcccaagaatacgattacatcattgtgggtgccggctcggccggtaacaccctggcg
acccgtctgactgaagacgaaggcgtcaccgtcctgctgctggaagccggtggcccggac
taccgtttcgacttccgcacccagatgccggcggcactggccttcccactgcaaggccgt
cgctacaactgggcctacgagaccgatccagagccacacatgaacggtcgtcgcatggag
tgcggtcgcggcaagggcctgggcggctcgtcgctgatcaacggcatgtgctacatccgc
ggcaacgccatggactacgacggctgggccaagctgccaggcctggaagactggacctac
ctggattgcctgccgtatttccgcaaggcggaaacccgtgacatcggccccaacgactac
cacggcggcgaaggcccggtcagcgtgaccacgcccaaggccggcaacaacccgttgttc
cacgccatggtcgaagccggcgtgcaggccggttacccgcgtaccgaagacctgaacggc
taccagcaggaaggcttcggcccgatggaccgcaccgtgacccccaaaggtcgtcgcgcc
agcaccgcccgcggttacctggacaccgcgaaaaagcgttcgaccctgaccatcgtcacc
cacgccctgaccgacaagatcctcttcgaaggcaagcgcgccgtgggcgtgagctacctg
caaggcagcactgaagagcgcgtggaagcccgtgcgcgcaaggaagtcatcgtcagctcc
ggcgccatcgcctcgccgcaattgctgcaacgttccggcgtaggcccccgcgccctcctg
gaaagcctggacatcccggtggttcacgacctgccgggcgtgggcgagaaccttcaggac
cacctggaactgtacctgcagtacgcctgcacccagccggtgtcgctgtatccatcgctg
ctgtggtggaaccagccggccatcggtgccgagtggctgttcaacggcaccggcatcggc
gccagcaaccagttcgaagccggcggtttcatccgtacccgcgaagagttcgaatggccg
aacatccagtaccacttcctgccggtggcgattaactacaacggcagcaatggtgtgaaa
gagcacggcttccaggcgcacatgggctccatgcgctcgccgagccgtggccgcgtgcag
ctcaagtccaaggacccgcgccagcacccgagcatcctcttcaactacatggccaccgag
caggactggcaggaattccgcgacggcatccgcctgacccgtgaaatcatgcagcagccg
gccctggaccctttccgcggccgcgagatcagcccgggcatcgaggtgcagaccgacgag
caactggacaagttcgtccgcgagcacgccgagaccgccttccacccatcctgctcgtgc
aagatgggcaccgacgacatggctgtagtggatggccagggtcgcgtgcatggcatgcaa
ggcctgcgcgtggtggatgcctcgatcatgccgatcatcaccaccggcaacctcaacgcg
ccgacgatcatgatggccgagaaaatcgccgacaagatccgtggccgccagccactgcca
cgcagcaccgcggcctactacgtagccggtgaagccccggtacgtggcaagccgatgcgc
gatgtgactcccgccgcgcagtaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-CMR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (10)   
   Pfam (8)   
   PROSITE (2)   
All databases (22)

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