KEGG T00283: Pfl01

Pseudomonas fluorescens Pf0-1: Pfl01_1801

Entry

Pfl01_1801 CDS T00283

Gene name

ligA

Definition

NAD-dependent DNA ligase LigA (EC:6.5.1.2)

Orthology

K01972

DNA ligase (NAD+) [EC:6.5.1.2]

Organism

pfo Pseudomonas fluorescens Pf0-1

Pathway

pfo03030	DNA replication
pfo03410	Base excision repair
pfo03420	Nucleotide excision repair
pfo03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:pfo03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:pfo03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pfo03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:pfo03430]

SSDB

Motif

Pfam:

DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT 5_3_exonuc DNA_ligase_ZBD PTCB-BRCT

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

2010582..2012939

AA seq 785 aa
MTAAKDRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITSDSPTQ
RVGSVALTAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSH
DISDTHIGNLQQLKAWGMPISHELKLAKGIGECLDYYRDIGERRNSLAYEIDGVVFKVNS
IADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVMERRPEDARPVQIPESCPVCGS
HVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKSVEQ
LVDEGLVSSPADLYALKFEDIVDLEGFAEVSSNKLLAAIEDSKKPGLARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPQVLTYLPDIGLEVAHEIHSFFEDAHNRQVITELLGHGL
QIQDQGELGAEFAASTTLGGFLDKLHIPSVGPGGAQKLADKFESLEGVMNADWLDMRQAL
PEKQANSVREFFALPEHRQLAEDAEKQLRDFGMHWQSEKKVVEGLPLAGETWVLTGKVEL
MSRDVAKEHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVMDEEAFIAFLKG
HGISA

NT seq 2358 nt +upstreamnt +downstreamnt
atgactgccgccaaagaccgcattctagagctgcgcgctgaactcgatcagcacaactac
cgttaccacgtcctcgatgagccgagcattccggatgccgagtacgaccggttgttccac
gagctcaaggcgctggaagcggccaacccggaactgatcaccagcgactcgccgacccag
cgcgtcggcagcgtggcgctgaccgcgttcacccaggtgcgtcacgaagtgccgatgctc
agcctcggcaacgccttcgaagaaaccgacatgcgcgagttcgaccgccgggtgaccgaa
ggtctggatctgccggccggcgatctgttcggtggtggcgcggcggtggaatacagctgc
gagccgaaactcgatggtctggcggtcagcctgctgtatcaggacggcgtgctggtgcgc
ggtgccacgcgcggcgacggcaccaccggcgaagacatcagcgtcaacgtgcgcaccgtg
cgcaacattccgctgaagctgcacggcacgggctggccggcgaccctggaagtgcgtggc
gaagtgttcatgtccaaggccggtttcgaacgcctcaacgcttcgcaactggaagtcggc
ggcaagactttcgccaacccgcgcaacgccgccgccggcagcctgcgtcagctggattcg
aagatcaccgccaaccggccgctggaattctgctgctacggcatcggccaggtgtcccac
gatatttccgacacccacatcggcaacctccagcaactgaaagcctggggcatgccgatc
agccacgaattgaaactggccaagggcatcggcgaatgcctggattattaccgcgatatc
ggtgagcgccgtaattcgctggcctatgaaatcgacggcgtggtgttcaaggtaaacagc
attgccgaccagcgcgaactgggcttccgcgcccgtgaaccgcgctgggccatcgcccac
aaattcccggccatggaagagctcaccgagctgctcgacgtggagttccaggtcggccgt
accggcgccgtcacccctgtggcgcgcttgaaaccggtcaaggtcgctggcgtcacggtg
gccaacgccacattgcacaacatggatgaagtcgcccggctgggcctgatgatcggcgac
acggtgatcattcgtcgcgctggcgatgtgatcccgcaagtggtgcaagtggtcatggag
cgccgcccggaagatgcgcggccggtgcagattcctgagagctgcccggtctgcggctcc
cacgtcgaacgcacgcaactggtcaagcgcagcaagggcaaggaaaccatcagcgagggc
gcggtgtatcgctgcgtcggccgactggcctgcggtgcgcaactgaagcaggcgatcatt
cacttcgtctcccgtcgtgcgatggacatcgaaggcctgggcgacaagagtgtcgagcag
ttggtcgatgaggggctggtcagttcgccggctgatctttatgcgctgaagttcgaggac
atcgtcgacctcgagggctttgccgaggtgtcgagcaacaagttgctggctgcgattgaa
gacagcaagaaaccgggtctggcgcgcttcatctatgcgctgggcattccagatgtcggc
gaagagacggccaaggtgctggcgcgttcgctggggtcgctggagcgtgttcagcaagcc
ttgccgcaagtgctgacttacctgccggacatcggtctggaagtggcgcacgagattcac
agcttcttcgaagatgcgcacaaccggcaggtgatcaccgagctgctgggccacggtttg
cagattcaggatcagggcgagctgggcgccgagtttgccgccagcaccacgctgggtggc
ttcctcgacaagctgcacattccctcggtgggcccgggcggggcgcagaagctggcggac
aagttcgaatcgctggaaggggtgatgaatgcggactggctggacatgcgccaggcattg
ccggagaagcaggccaactcggttcgcgagttcttcgccttgccagaacatcgtcaactg
gctgaagacgccgagaagcaactgcgcgatttcggtatgcactggcagagcgaaaagaaa
gtcgtcgaaggcctgccattggccggggagacctgggtactgaccggcaaggtcgagctg
atgagccgcgacgtggccaaggaacacctggaaagcctcggcgccaaggtcgccggctcc
gtgtcggccaagactcattgcgtggtcgccgggccgggcgccgggtcgaaactgaccaag
gccaacgaactgggcgtgaaagtgatggatgaagaggcgtttatcgcgttcctgaaagga
cacggtatttccgcctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-PFO (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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