KEGG P.fluorescens_PfO1: Pfl01

Pseudomonas fluorescens Pf0-1: Pfl01_2312

Entry

Pfl01_2312 CDS P.fluorescens_PfO1

Gene name glyA

Definition serine hydroxymethyltransferase (EC:2.1.2.1)

Orthology K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]

Pathway pfo00260 Glycine, serine and threonine metabolism
pfo00460 Cyanoamino acid metabolism
pfo00670 One carbon pool by folate
pfo00680 Methane metabolism
pfo01100 Metabolic pathways

Class Metabolism; Energy Metabolism; Methane metabolism [PATH:pfo00680]
Metabolism; Amino Acid Metabolism; Glycine, serine and threonine
metabolism [PATH:pfo00260]
Metabolism; Metabolism of Other Amino Acids; Cyanoamino acid
metabolism [PATH:pfo00460]
Metabolism; Metabolism of Cofactors and Vitamins; One carbon pool by
folate [PATH:pfo00670]

SSDB

Motif Pfam: SHMT Aminotran_1_2 Beta_elim_lyase Aminotran_5 Cys_Met_Meta_PP
DegT_DnrJ_EryC1
PROSITE: SHMT

Other DBs NCBI-GI: 77458539
NCBI-GeneID: 3715536
JGI: Pfl2312
UniProt: Q3KDV1

Position complement(2666047..2667285)

AA seq 412 aa
MSLQNFDPAIARLIDRERNRQETHLELIASENYVSEEVLQAQGSLLTNKYAEGYPGRRYY
GGCKVVDEIENLAIERARKLFGCEYVNVQPHSGSQANQAVFLAVLEPGDRILGMSLAHGG
HLTHGASVNFSGKFFQAFTYGLEKDSETLDYDQMEDLAREHRPKMIIAGASAYSRVIDFP
RFRKICDEIGAYLMVDMAHYAGLIAAGVYPSPVGIADFITSTTHKTLRGPRGGLILAKAE
YAAVLDKTIFPVYQGGPLMHVIAAKAVAFNEALGDEFKHYQQRVINNARTMADVLTRRGL
RVVSGGTDCHMFLLDLRAMNITGKDAEALLESAHITLNKNAIPDDPQKPAITSGIRIGTP
ALTTRGFGEAECAEVANLIADLLEQPDNTARVENIRRRVMHLCECFPVYLLT

NT seq 1239 nt +upstreamnt +downstreamnt
atgagcctgcaaaatttcgaccccgccattgcccgcctgatcgaccgcgaacgcaatcgc
caggaaactcacctggaactgatcgcctcggaaaactacgtcagtgaagaagtgctccag
gcccagggctcgctgctcaccaacaagtacgccgaaggctatccgggccggcgctattac
ggcggctgcaaggtcgtcgacgagatcgagaacctggccatcgaacgcgcccgcaaactg
ttcggttgcgagtacgtcaacgtccagccgcactctggttcacaggccaatcaggcggtg
ttcctggcggtgcttgagcccggcgacaggatactgggcatgtccctggcccacggcggg
cacctgacccacggtgcctcggtgaatttctccgggaagtttttccaggccttcacctat
gggctggagaaggacagcgaaaccctcgactacgatcagatggaagacctggcccgcgaa
caccggccgaagatgatcatcgccggcgcttcagcctattcgcgcgtcatcgacttcccg
cgctttcgcaaaatctgcgatgaaatcggcgcttacctgatggtcgacatggcccactac
gccggtctcatcgcggcgggcgtgtacccttcgccggtgggcatcgccgacttcatcacc
tcgaccacgcacaagaccctgcgcggcccgcgcggcggcctgattctggccaaggccgaa
tacgctgccgtgctcgacaagacgatcttcccggtttatcagggcggcccgctgatgcac
gtgatcgccgccaaggctgtggcgttcaacgaagctctgggcgacgagttcaagcattac
cagcaacgggtgatcaacaacgcccggaccatggccgacgtgctgacccgacgcggattg
cgcgtggtgtccggcggcaccgactgccacatgttcctgctcgacctgcgcgcgatgaac
atcaccggcaaggacgccgaagccctgctggaaagcgctcacatcacgctgaacaagaac
gcgatccccgatgacccgcagaaaccggcgatcaccagcggcatccgcatcggcacgccg
gcactgaccactcgcggtttcggtgaggccgaatgcgccgaagtggccaacctgatcgcc
gacctgctggagcaaccggacaacaccgcgcgggtggaaaacatccgccgtcgagtgatg
cacctgtgcgaatgctttccggtgtacctgctgacgtga

All links

Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JGI-PFO (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (6)   
   PROSITE (1)   
All databases (23)

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