KEGG   Pseudozyma flocculosa: PFL1_04799
Entry
PFL1_04799        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PFL1_04799
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfp03019]
    PFL1_04799
Messenger RNA biogenesis [BR:pfp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PFL1_04799
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     PFL1_04799
SSDB
Motif
Pfam: Not3 NOT2_3_5_C Syntaxin_2 WKF PI3K_P85_iSH2 Cep57_MT_bd
Other DBs
NCBI-GeneID: 19318899
NCBI-ProteinID: XP_007880518
UniProt: A0A061HAN7
Position
Unknown
AA seq 612 aa
MAARKLQTEIDRTLKKVAEGVEIFEGLYEKLQQSSNHTQKEKLESDLKTQIKKLQRLRDQ
IKTWLQSNDIKDKKPLLDNRKLIETQMERFKACEKEMKTKAFSKEGLIAAARLDPREKAK
MEMSDWLSGMVDELSRQVETTEAEIEVTLGSSKKKKGSAKDERVSAMENQNDRRNWHISR
LEILLRMLENGNLETDRVEGIKDDIAYFVESNAEEDFEEDEGIYDEFNLDDEEEAFGLKD
NDDLQSSHDGASLADVDASPKPNATPSKARRDSEVEMKKDESPAPLAKKVSKKQPSEPPA
LPKEKAVPAANFAQAKAPTSQASVTSPPKAPSAAPLPPIRYAAAAAAAVAPTATSNSTAQ
PGAPGSSTDPTAASPPPSSAAGTADQPSEATTAASPALSNAHSVSQQASAASHPTSVHST
PAPAGGGAGTPAQQAAAQKQAGTEARLPSSLTDLVSSFESAKQKSMRRDSNLTSVHKSLE
SSFMNVPEPLDSDKPKYYVPKNPFPTPAYYPQAPASVFDNPALYSKFDVETLFYIFYYQQ
GTYHQYLAAKELKKQSWRFHKQYLTWFQRHSEPQAITDEYEQGVYVYFDWEGSWCQRKKS
DFRFEYRWLEDN
NT seq 1839 nt   +upstreamnt  +downstreamnt
atggcggcaagaaagttgcaaaccgagatcgaccggaccttgaagaaggtcgcggaaggt
gtcgagatcttcgagggcctctatgagaagcttcagcagtcgtcgaatcacacgcagaag
gagaagctcgagtccgacctcaagactcagatcaagaagctgcaaaggctccgggatcag
atcaagacctggctgcagagcaacgatatcaaggacaagaagccgctgctcgacaatcgc
aagctcattgagacgcaaatggagcggttcaaggcgtgcgaaaaggagatgaagaccaag
gccttctcgaaagagggccttatagcagccgcccggctagacccgcgcgagaaggccaag
atggagatgtccgactggctctcgggcatggtcgacgagctctcaagacaagtcgagacg
accgaggccgagatcgaggtcacgctcggctccagcaagaagaagaagggcagcgctaaa
gacgagcgagtctcggccatggagaaccagaacgaccggcgaaattggcacatctccagg
ctcgagatcctccttcggatgctcgagaacggcaacctcgaaacggatcgcgtcgagggg
atcaaggacgacatcgcctactttgtcgagagcaatgctgaagaggactttgaggaggac
gaaggcatctatgacgagttcaacctcgacgacgaggaagaggcgttcggtctgaaggat
aacgacgacctccaaagcagccacgacggcgcatctctcgctgacgtcgacgcctcgccg
aaaccaaacgccacgccatcaaaggcgaggcgagacagcgaggtcgagatgaagaaggac
gagtcgccggcaccgttggcaaagaaggtctcgaaaaagcagccgagcgagccaccagca
ttgccaaaggagaaggcggtgccagccgccaactttgcgcaagcgaaagctccgacgtca
caggcttcggtcacctcaccaccaaaggcaccgagcgccgcaccgcttccgccgatccga
tacgcggccgccgccgcggcagccgtcgcacctaccgccacgtccaacagcaccgcgcag
ccgggcgcgccagggtccagcacagatccaacggcggcctctccgccgccatcatctgcg
gcgggcaccgcggatcagccttcggaagcgacgacggccgcatccccggcactctcgaac
gcgcacagcgtgtcgcagcaggcatctgccgcctcgcatccgacatcggttcattcgaca
ccggcgcccgccggcggtggagcggggacaccggcgcagcaggcggcggcgcaaaagcag
gcgggcaccgaagcaaggctgccgagctcgctgaccgacctagtgtcgtcgttcgagtcg
gccaagcaaaagtcgatgcgccgggacagcaacctgacgtcggtgcacaagtcgctcgag
tcgagcttcatgaacgtgcccgagccgctcgactcggacaagcccaagtactacgtgccc
aagaacccgttcccgacgccggcctactacccgcaggcgcccgcgtcggtgttcgacaac
ccggcgctctattccaaattcgacgtcgagacgctcttctacatcttctactaccagcaa
ggcacctaccaccagtacctggcggccaaggagctcaagaagcagagctggcgcttccac
aagcagtacctcacctggttccagcgccactcggagccgcaggccatcaccgacgagtac
gagcagggcgtctacgtctactttgactgggagggctcgtggtgccagcggaagaagagc
gacttccgattcgagtaccggtggctcgaggacaactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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