KEGG   Pragia fontium: QQ39_02510
Entry
QQ39_02510        CDS       T03952                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
pfq  Pragia fontium
Pathway
pfq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    QQ39_02510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfq03019]
    QQ39_02510
   03016 Transfer RNA biogenesis [BR:pfq03016]
    QQ39_02510
Enzymes [BR:pfq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     QQ39_02510
Messenger RNA biogenesis [BR:pfq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     QQ39_02510
Transfer RNA biogenesis [BR:pfq03016]
 Prokaryotic type
  tRNA degradation factors
   QQ39_02510
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 aRib KH_2 S1_2 SLS1_KH2 Spt6_S1 DUF5813
Other DBs
NCBI-ProteinID: AKJ43720
UniProt: A0A0G3CSU3
Position
568137..570254
AA seq 705 aa
MLNPIVRKFKYGQHTVTLETGMMARQATAAVMVNVDDTAVFVTVVGAKKAKEGQSFFPLT
VNYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFLNEVQVIATVVSV
NPQVSPDIVAMIGTSAALSLSGIPFNGPIGAARVGFINDQYVLNPTMDELKESRLDLVVA
GTQSAVLMVESEAELLSEEQMLGAVMFGHEQQQIVIDNINALVAEAGKPKWEWQSPEINQ
ALYAQVEALAAGRLGDAYRITDKQERYAQIGVIKTDVIEALIAGNPDLNQSEVGDMLSSI
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVVATLGTAR
DAQNIDELTGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDQAD
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDETNFVVLSD
ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMKAALSQAKGARLHILGVMEQA
ISAPRGDISQFAPRIHTIKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT
DGDKAKHAISRIEEITADVEVNRVYAGKVTRIVDFGAFVSIVGGKEGLVHISQIADKRVE
KVSDYLQMGQEVQVKVMEVDRQGRIRLSIKEANAPAQDAPAASEE
NT seq 2118 nt   +upstreamnt  +downstreamnt
ttgctgaatccgatcgttcgtaaattcaaatatggtcaacataccgtgacgttagaaacc
ggtatgatggcgcgtcaggcaactgccgctgtaatggttaatgttgatgacaccgcggta
tttgttaccgttgttggggcgaaaaaagccaaagaaggtcaaagtttcttcccactaacc
gtaaattatcaagagcgtacttatgctgccggccgtatccctggtggcttcttccgtcgt
gaaggtcgtcctagcgaaggtgaaacgctgatcgcgcgtttgattgaccgtcctgttcgt
ccactgttccctgaaggtttcctgaatgaagttcaggttatcgctaccgttgtttctgtg
aatccacaagttagcccggatatcgtggccatgattggtacctcagctgccctgtcgctg
tcaggtattccatttaacggtcctattggtgcagcccgcgttggtttcattaacgatcaa
tatgtactgaacccaaccatggatgagctgaaagaaagccgtctggatctggttgttgct
ggtactcaaagtgcggttctgatggttgaatcagaagctgaactcctgagcgaagagcaa
atgctcggtgcggtgatgttcggtcatgaacaacagcagatcgttattgataacatcaat
gcgctggttgctgaagcaggtaaaccgaagtgggaatggcagtcacctgaaatcaatcag
gcgctatatgcacaggttgaagcgctggccgctggccgtttaggcgatgcttaccgtatc
accgataagcaagagcgttatgcacaaatcggcgttatcaaaactgacgttatcgaagcg
ttgattgctggcaatcctgatttaaaccaaagcgaagtcggcgatatgctgagcagcatc
gagaagaatgttgttcgtagtcgcgtattacgcggtgagccacgtatcgacggtcgtgaa
aaagatatgattcgcggtctggatgtgcgtactggcgtattacctcgcacccatggttct
gctctgtttactcgtggtgaaactcaggcgctggttgttgctaccctgggtacggctcgc
gatgctcagaatatcgatgaactgaccggtgaacgtaccgacagcttcctgttccactac
aacttccctccgtactccgtaggggaaaccggtatggtgggttcacctaagcgtcgtgaa
attggtcacggtcgtttagcgaagcgcggcgtgctggcagtgatgccagatcaggctgat
ttcccatataccgttcgtgtggtatcagaaattactgaatctaacggttcatcgtcgatg
gcttccgtatgtggcgcatcactggctctgatggatgcaggtgtaccgattaaagctgcc
gttgcgggtatcgcaatgggtctggttaaagacgagacaaactttgttgttctgtctgat
attctgggtgatgaagatcatctgggcgatatggactttaaagtagccggtagccgtgaa
ggtatttctgcgctgcaaatggacatcaaaattgaaggtattactcgcgagatcatgaaa
gcggctctgagtcaggctaagggtgcacgtttgcacattcttggcgtgatggaacaggcg
atttctgcaccgcgcggtgatatttcccagtttgctccacgtattcacaccatcaagatc
aaccctgagaaaatcaaggatgtgatcggtaaaggtggtgcggttattcgtgcactgact
gaagaaactggcactaccattgaaattgaagatgacggtacagtgaagattgcagcgact
gacggcgacaaagcgaaacatgctatcagccgtatcgaagagatcaccgctgatgttgaa
gtgaatcgcgtgtatgctggtaaggttactcgtattgttgacttcggtgccttcgtttct
atcgttggtggtaaagaaggtttagtacatatttctcaaatcgctgacaagcgcgtagag
aaagtatctgactacctgcaaatgggtcaggaagttcaggttaaagtgatggaagttgac
cgtcagggccgtattcgcttaagcattaaagaagcgaatgcaccagctcaggacgcgcca
gctgcatctgaagagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (24)   

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