KEGG T00899: PFLU1312

Pseudomonas fluorescens SBW25: PFLU1312

Entry

PFLU1312 CDS T00899

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

pfs Pseudomonas fluorescens SBW25

Pathway

pfs03410	Base excision repair
pfs03420	Nucleotide excision repair
pfs03430	Mismatch repair
pfs03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:pfs03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pfs03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:pfs03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:pfs03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

229588844

NCBI-GeneID:

7819910

UniProt:

C3K7I7

Position

complement(1449866..1451500)

AA seq 544 aa
MKAFAELYANLDATTSSNAKLAALQAYFRHAAPEDAAWAVYFLSGGRPRQLVPTRLLRDM
ATEASGIEPWLFEESYQSVGDLAETISLLLPESPYTSEDGLAVWLEEKLLPLRGLPPLDL
AARLPALWAQLDQPSLMVCIKLITGSFRVGVSKLLVTRALAAMAELDSKRVAQRLVGYTD
LSNRPTPEGYLKLIAPESSDEHAQRGGQPYPFFLAHGLAQPVEQFDTLLGSPADWQVEWK
WDGIRAQLVKRDGRLWIWSRGEELVTERFPELHSLVSGLPDGTVIDGEIVVWKDAVQPFA
QLQQRIGRKTLSKKVLEDAPVAVLAYDLLEHQGDDWRNHTQAERRAQLEQVIAGCNQPVL
LASPLLTANSWQDLAEQREASRSLGVEGMMLKARDGLYGVGRTKDMGVWWKWKVDPFSVD
AVLIYAQRGHGRRASLYSDYTFAVWDGPSGSERTLVPFAKAYSGLTDEEMRKVDAIVRKT
TVEKFGPVSSVTPSMVFELGFEGIALSKRHKSGIAVRFPRMLRWRQDKSVEDADNLATLQ
DLLT

NT seq 1635 nt +upstreamnt +downstreamnt
atgaaggccttcgccgagctgtacgccaacctcgacgccaccacctcgagcaacgccaag
ctggcggcgctgcaggcgtactttcgccatgccgcgccggaagatgcagcctgggccgtg
tactttctgtccggcggacggccgcggcaattggtacccacgcgtctgttgagggacatg
gccaccgaagcgtccggcatcgagccgtggctgtttgaagagagctaccagtcggtgggc
gacctggcggagaccatttccctgctgctgccggaatccccctacacctcagaggacggt
ctggcggtgtggctggaggaaaaactcttgcctctgcgtggcctgcctccgctggacttg
gcagcgcggctccctgcgttatgggcgcaactggatcagccgagcctgatggtgtgcatc
aagttgatcaccggcagttttcgtgtgggcgtgtcgaagttgctggtcacccgcgccctt
gccgcgatggccgaactcgacagcaagcgcgtggcccagcggttggtgggctacaccgat
ctgtccaatcgccctacgcctgagggctacctcaagctgatcgcccctgaatcgtccgac
gaacatgcgcaacggggcgggcagccttatccgttttttctcgctcacggcttggcgcaa
ccggtggagcagttcgacaccttgctgggctctcccgccgattggcaggtcgagtggaag
tgggatggcatccgtgcgcagttggtcaagcgtgacggccgtctgtggatctggtcacgg
ggtgaagagctggtgaccgagcgcttccccgaactccacagcctggtgagcggcttgccc
gacggcacggtgatcgacggcgagatcgtggtgtggaaagacgcggtgcaacccttcgct
cagttgcaacagcgcatcggccgcaaaaccctgagcaaaaaggtactggaggatgccccg
gtcgcggtcctggcgtacgacctgctggaacatcagggtgacgactggcgcaaccacacc
caggccgagcgccgcgcccagcttgagcaggtgattgccgggtgcaaccagcctgtattg
ctggcgtcccctttgctgacggcaaacagttggcaggacctggcagaacagcgcgaagcc
tcccgcagcctcggcgtggaaggcatgatgctcaaggcgcgtgatgggctgtacggcgtg
ggccgcaccaaggacatgggcgtgtggtggaagtggaaggtcgacccgttcagcgtcgac
gcggtgttgatctacgcccaacgcggccacggccgacgcgccagtctctacagcgactac
accttcgcggtgtgggacggcccgtccggcagcgaacgtacgctggtgccctttgccaag
gcctactcagggctgaccgacgaagagatgcgcaaggtcgacgcgattgtgcgcaagacc
acggtggaaaagttcggcccggtgagcagcgtgacgccgagcatggtgtttgaattgggg
tttgaagggattgccctgtccaagcggcataagagcgggattgcggtgcggtttccacgg
atgttgcgctggcggcaggataaatctgtggaagacgctgacaacctcgccaccctgcaa
gacctcctgacctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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