KEGG   Pseudomonas fluorescens SBW25: PFLU_1516
Entry
PFLU_1516         CDS       T00899                                 
Name
(GenBank) Ribonuclease D (RNase D) (EC
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
pfs  Pseudomonas fluorescens SBW25
Brite
KEGG Orthology (KO) [BR:pfs00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pfs03016]
    PFLU_1516
Enzymes [BR:pfs01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     PFLU_1516
Transfer RNA biogenesis [BR:pfs03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    PFLU_1516
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC RNAseD_HRDC_C
Other DBs
NCBI-ProteinID: CAI2795802
UniProt: C3K5F1
Position
1:1662662..1663795
AA seq 377 aa
MAIDIHWICDNDSLGQHCAEWQQLPFVALDTEFMRVDTFYPIAGLIQIGDGVRAYLIDPL
TIDNWQPLAALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSMGY
SRLVQAVLDIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVYTRLRPRLSDEKYAWV
LDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREQQARARDLPRNRII
REHSLWPLAKSQPDNLAALGKIEDMHPRTVRQDGQFLLDLIKRAGSVPMDQWPPAVAEPL
PVDAAALIKQLRALGQTFAERLDMAPELMLRKKTLEALVKSGYPDGPYKLPDSLRGWRRE
LMGQALLDSLATAGEQP
NT seq 1134 nt   +upstreamnt  +downstreamnt
gtggccatcgatattcactggatctgcgacaacgatagcctcggccagcactgcgccgaa
tggcagcagttgccattcgtcgccctcgacaccgaattcatgcgggtcgacaccttttat
cccattgccgggctgatccagatcggtgatggcgtacgcgcttacctgatcgaccccctg
accatcgacaactggcaacccctggccgccttgctggaaaacccggcggtgatcaaggtg
gtgcacgcgtgcagtgaagacctcgaagtgctgctgcgcttgaccggcagcctgccggtg
ccgttgttcgacacccaattggcggcggcttacctgaacctcggtttttccatgggctat
tcgcgcctggtgcaagccgtgctggatatcgagctgcccaagggcgagacccgctcggac
tggctgcagcggccgctgtccgagacgcagatcagctacgccgccgaagacgcggtgcac
ctggccgaggtttacacgcgtttgcgtccacgactgtcggacgaaaagtacgcctgggtg
ctggacgacggtgccgaactggtcgccaacctgcgccgcgaagtcgacccgtacgaggtg
taccgcgacgccaagctggcgtggaaactgtcgcgtgcccaactcgccgtgctgcgtgaa
ctgtgcgcgtggcgcgagcagcaggcccgtgcgcgtgacctgccgcgtaaccgcatcatt
cgtgaacactcgttgtggcccctggccaaatcccagccggataacctcgccgccctgggc
aagatcgaagacatgcacccgcgcaccgtgcgtcaggacggccagttcctgctggacctg
atcaaacgggccggcagcgtgccgatggaccaatggccgcccgccgtcgccgaaccgttg
ccggtggatgccgccgctctgatcaagcaactgcgcgccttgggccaaacgttcgccgag
cgcctggacatggcgccggaactgatgctgcgcaagaaaaccctggaggccctggtcaaa
agtggctaccccgacgggccttataaattgccagactcgctgcgtggctggcgccgcgag
ttgatgggccaggcgctgctcgacagcctggccactgccggagaacagccttga

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