KEGG   Pseudomonas fluorescens SBW25: PFLU_2911
Entry
PFLU_2911         CDS       T00899                                 
Name
(GenBank) 3'-phosphoesterase (EC (DNA repair polymerase) (NHEJ DNA polymerase) (Polydeoxyribonucleotide synthase [ATP]) (Polymerase/primase)
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pfs  Pseudomonas fluorescens SBW25
Pathway
pfs03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pfs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PFLU_2911
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfs03400]
    PFLU_2911
Enzymes [BR:pfs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PFLU_2911
DNA repair and recombination proteins [BR:pfs03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PFLU_2911
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: CAI2797133
UniProt: C3KAZ9
Position
1:complement(3172472..3174988)
AA seq 838 aa
MPKPLSEYNRKRDFGVTGEPAGRAPAGKRNASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGIWQPHDDPRK
AYAAGKLTFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDAQARPADDYDIVQAQPD
SVVSDASAGKSNVKYNVKYNVKYNAKPSTKATRQQAAATALPEQFNPQLATLVDRAPEGD
WQYEIKFDGYRMLTRIRDGEVRLFTRNGHDWTERLPRQVKALQALKLKDSWLDGEVVSLN
GDGLPDFQALQNAFDIGRSLDIVYYLFDAPFLNGQDQRQAPVEARRAALKDALAVSRSKL
LRFSEAFTAHPRDIFESACDLALEGVIGKRLGSPYVSSRSADWIKLKCRLRQEFVIVGYT
RPQGSRSGFGALLLAVNDDAGLVYAGRVGTGFDHASLKAIYAQLKPLERKTSPLEKPLSS
AQARGVHWVEPTLVGEVQFAEWTREGVVRQAAFVGLRSDKPAAEIIHELPRTANAMKPAK
KTSAAVTITHPDRVIDPQSGTRKQQLAQFYDSISQWILPFLRHRPVSLLRAPEGIEGEPF
FQKHSERLAIPNIKHLDQALDPGHARLMEIDSTRALIGAVQMGAVEFHTWGATSDKIETP
DLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLVVPLARRDGWDT
VKAFAKAIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPV
SVPISREELKGLRSAQQWTVANVQQRLNGLKADPWAGYTNRQKLSQKMWDKLGARPPV
NT seq 2517 nt   +upstreamnt  +downstreamnt
atgccaaagcccctcagcgagtacaaccgtaagcgcgacttcggcgttaccggcgaaccg
gcaggccgtgcacctgccggcaaacgcaacgcgtcggcgctgtcttttgtgatccagaaa
catgacgcgcgcaacctgcactatgactttcgcctggaactcgacggcgtgctgctcagt
tgggcggtgcccaagggcccgagcctggacccgagccaaaagcgcctggccgtccacgtg
gaagatcaccccctcagctatggcagcttcgaaggcagtattcccgccggccaatacggc
gctggcgacgtcatcgtgtgggatcgcggcatctggcaaccccatgatgacccgcgtaag
gcctacgccgccggcaagctcacattcaccctggtcggcgagaaactctccggcgactgg
gcgctggtgcgcacccgcctgaagggcagcggcgacaaggaacaatggctgttgatcaag
gaaaaggacgcgcaggcgcgcccggcagacgactacgacatcgttcaggctcaaccggac
agcgtggtcagcgacgcctcggcaggtaaatccaacgttaaatacaacgttaaatacaac
gttaaatacaacgccaagcccagcaccaaagctacgcgacaacaagcagcggcaaccgcc
ctccccgaacaattcaacccacaattggccacgctggtggaccgcgcccccgaaggcgac
tggcagtacgaaatcaagttcgacggttaccgcatgctcacgcgcattcgtgacggcgag
gtgcgcctgttcacccgcaacggccatgactggaccgaacgcctgccgcgccaggtcaag
gccctgcaggccctcaagctcaaggacagctggctcgacggcgaggtggtcagcctgaac
ggcgacggcctgccggacttccaggcactgcaaaacgccttcgatatcggccgcagcctg
gacattgtctactacctgttcgatgcgccattcctcaacggccaggatcaacgccaagcg
cctgtcgaggcacgccgcgccgcgctcaaggacgcgctggccgtaagcagaagcaagttg
ctgcggttctccgaagccttcaccgcccaccctcgcgatatcttcgaaagtgcctgtgac
ctcgccctggaaggcgtgatcggtaagcgcctgggcagcccctatgtgtcgagtcgcagt
gccgattggatcaagctcaaatgccgcctgcgccaggagttcgtgatcgtcggctacacc
cggccacagggttcacgcagtggtttcggcgcgctgttgctggcggtgaatgacgatgcc
gggctggtgtatgccgggcgtgtgggcacaggctttgatcacgcgtcactgaaagcgatt
tacgcgcaactcaagcccctggaacgcaagacatcgccgctggaaaagccgctgagcagc
gcccaggcccgtggcgtgcactgggtggagccgacgttggttggcgaggtgcaattcgcc
gaatggacccgggaaggtgtggtccgccaggcggcattcgtggggctgcgcagcgacaaa
ccggccgccgagatcattcacgagctaccacgaacggccaacgccatgaaacccgcgaaa
aaaaccagcgctgcggtaacgatcacccaccccgaccgggtgatcgacccgcaaagcggc
acccggaagcagcaactggcacagttctacgacagcatcagccagtggatcctgcccttc
ctgcgccaccgccctgtttcattgctgcgagcgcctgaaggcatcgaaggcgagccattc
ttccagaaacattcagagcgcctagccattcccaacatcaagcacctggatcaggcactc
gacccagggcatgcgcgcctgatggaaatcgacagcacccgcgcgttgatcggtgccgta
caaatgggtgccgtagaatttcacacctggggcgccacctcagacaagatcgaaaccccc
gacctgtttgtgctcgatctcgacccggacccggcgctgccctggaaagccatgctggaa
gcggcgcaactgaccctgtcggtgctggatgaactggggctgcaagcgttcgtcaagacc
agcggaggcaagggactgcacctggtcgtgccactggcgcgccgcgacggttgggacacc
gtcaaggcgttcgccaaggccatcgcccagttcatgaccgagcaactgcccgagcgtttt
accgcgacgtcagggcccaaaaaccgcgtcggcaagatctttatcgactacctgcgcaac
gcgcggggcgccagcaccgtggcggcctactccgtgcgggcacgccctggcctgccggtg
tcggtgccgatcagccgtgaggagttgaagggtttacgcagcgcgcagcaatggactgtc
gccaatgtgcagcagcggttgaacggtttgaaggctgatccctgggccgggtataccaac
cgacagaaactcagccagaagatgtgggacaaattgggcgcccgtccaccggtgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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