KEGG   Pseudomonas fluorescens SBW25: PFLU_4588
Entry
PFLU_4588         CDS       T00899                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pfs  Pseudomonas fluorescens SBW25
Pathway
pfs03030  DNA replication
pfs03410  Base excision repair
pfs03420  Nucleotide excision repair
pfs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pfs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PFLU_4588
   03410 Base excision repair
    PFLU_4588
   03420 Nucleotide excision repair
    PFLU_4588
   03430 Mismatch repair
    PFLU_4588
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfs03032]
    PFLU_4588
   03400 DNA repair and recombination proteins [BR:pfs03400]
    PFLU_4588
Enzymes [BR:pfs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     PFLU_4588
DNA replication proteins [BR:pfs03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     PFLU_4588
DNA repair and recombination proteins [BR:pfs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     PFLU_4588
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PFLU_4588
   MMR (mismatch excision repair)
    DNA ligase
     PFLU_4588
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      PFLU_4588
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD 5_3_exonuc DUF2875_C PTCB-BRCT
Other DBs
NCBI-ProteinID: CAI2798756
UniProt: A0AA35N1A7
Position
1:complement(5053376..5055733)
AA seq 785 aa
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQ
RVGSAALSAFTQVKHDIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNIRTVRNIPLKLHGSGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDIS
DTHIGNLQQLKKWGMPISHELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFKVNSIAS
QRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA
TLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVPERRPENARAVQIPESCPVCGSHVE
RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD
EKLIGSPADLYTLKYEQIIDLEGFADISSKKLITAIENSKTPTLARFIYALGIPDVGEET
AKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPQACGL
QLQDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKADWLDMRQAL
PEKQAKAVREFFDNADNANHALAIEQQLKDFGMHWDSEKKVVEGLPEAGHTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLAK
HNIPV
NT seq 2358 nt   +upstreamnt  +downstreamnt
atgaccgccgcccacacccgcatcctcgaactgcgcgctgaactggatcagcacaactac
cgttaccacgtccttgacgagccgagcattccggacgccgagtacgaccggctgttccac
gagctcaaggccctggaggccgagcacccggacctggtcacgcgtgattcaccgacgcag
cgggtcggcagtgcggcgttgtcggcgttcacccaggtcaagcacgacattccgatgctc
agcctcggcaatgccttcgatgaaaccactatgctcgaatttgatcgccgggtgaccgaa
gggctcgacctgccggtgggcgatctgtttggcggcggggcagcggtggagtacagctgc
gaaccgaagctcgatggcctggcggtcagcctgctgtatcaggacggcgagctggtacgc
ggcgccacccgtggcgacggcaccaccggcgaagacatcagcgtcaacatacgcaccgtg
cgcaatattccgttgaagctgcacggcagcggctggccggcgaccctggaagtgcggggt
gaagtgttcatgtccaaggccggtttcgaacggctcaatgcctcgcaactggaagtcggc
ggcaagaccttcgccaacccgcgtaacgccgctgccggtagcctgcgccagctggactcg
aagatcactgccagccgcccgttggaattctgctgctacggtgtgaccaccgacatcagt
gatacccatatcggcaacctgcaacaactgaagaagtggggcatgccgatcagccacgag
ctgaaactggccaagggtatccaggattgtctggattactaccgcgacatcggcgagcgg
cgtaacagcctgccgtatgaaatcgacggtgtcgtattcaaggtcaacagcatcgcctct
cagcgcgagttggggttccgcgcccgcgaaccgcgctgggccatcgcgcataaattcccg
gccatggaagaactgaccgaactgctcgacgtggaattccaggtcggtcgtaccggcgcc
gtcacgccggtcgcgcgacttaaaccagtcaaggtcgcgggtgtgaccgtgtccaacgcc
acgttgcacaacatggatgaagtcgcgcgcctgggcctgatgatcggcgacaccgtgatc
atccgccgcgccggtgatgtgatcccgcaggtcgtgtcggtcgtccccgagcgccgcccg
gaaaatgcccgcgcggtgcagatccccgaaagctgcccggtgtgtggctcccatgtggag
cgcacgcaactggtcaagcgcagcaagggcaaggaaaccgtcagcgaaggcgcggtgtac
cgttgcgtcggccgtctggcctgtggcgcccagcttaagcaggcgattatccatttcgtt
tcgcgccgcgccatggacatcgacggcctgggcgacaagaccatcgagcaactggtggat
gaaaagcttatcggctcgccggccgacctctacacgctcaagtacgagcagatcatcgac
ctggaaggctttgccgatatttccagcaaaaagctgatcaccgccatcgaaaacagcaag
accccgaccctggcgcggtttatctacgccttgggcattcccgacgtaggcgaggaaacc
gccaaggtgctggcgcgctccctggcgtctctggagcgcgtgcaaaaagccttgccggaa
gtgctgacgtacctgccggacgtgggcctggaagtggcgcacgagattcacagcttcttc
gaagacagccacaaccaggacgtgatcggcgcgctgctgtcgccgcaggcatgcggcctg
caattgcaagatcagggcgaactgagcgccgaattcgccgccagcaccaccttgggtggt
ttgctcgacaagctccacgtgcccagcgtcggccctggcgctgcgcagaagctggcggac
aagttcgttaccctggaaggcgtgatcaaggccgactggctggatatgcgtcaggcactg
cccgagaagcaggccaaggctgtgcgcgaattcttcgataacgcagacaacgccaaccac
gccctggccatcgagcagcagctcaaggattttggcatgcattgggacagcgagaagaag
gtagtcgaaggcttgcccgaggccgggcatacctgggtgctcaccggctcgctggagctg
atgagccgtgacgtggccaaggataaacttgaaagcctgggcgccaaggtggcgggttcg
gtctcggcgaaaacccactgcgtggtggcggggccgggtgccggttccaagctggccaag
gccagtgaattgggcctgaaggtgttggatgaagaagctttcgtcgccttcctcgccaaa
cacaacatccccgtctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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