KEGG   Pelosinus fermentans: JBW_03891
Entry
JBW_03891         CDS       T03813                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
pft  Pelosinus fermentans
Pathway
pft03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pft00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    JBW_03891
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pft03021]
    JBW_03891
   03400 DNA repair and recombination proteins [BR:pft03400]
    JBW_03891
Enzymes [BR:pft01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     JBW_03891
Transcription machinery [BR:pft03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     JBW_03891
DNA repair and recombination proteins [BR:pft03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      JBW_03891
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DUF5887
Other DBs
NCBI-ProteinID: AJQ29228
UniProt: I9NTJ0
Position
complement(4324861..4328658)
AA seq 1265 aa
MFNPVPVGKKIRYSYAKIKEVLDMPNLIEIQKNSYNWFLKEGLQEIFHDISPIQDFTGNL
VLTFEKFTLGEAKYHVEECKERDVTYSAPLRVNVRLINRETGEIKEQEVFMGDFPLMTEN
GTFIINGAERVIVSQLVRSPGAYYNETIDATGKKLYNSTVIPNRGAWLELETDANDVMSV
RVDRTRKLPATVLIRALGYASNAAIAELFHDDVRVRATLERDNTNSREEALVEIYKRLRP
GEPPTVDNATQLLESLFFDSKRYDLATVGRYKLTKKLGWRRRLMGKTLYQAIANAETGEI
IVPADTIVDEKVLDQIDQSGVFANAALIEVKVKLKDGSPVKMLCNPELPYNHRTITREDI
LASVNYLLNLMDGFGNVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDVD
VITPQALINIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGF
EVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTFGRINEFGFIETPYRKIDKENRIVTEDV
RYLTADEEDEVVCAQANEPLNENSWFVEPRVTVRHRHEILVIPAEKVDYMDVSPKQVVSI
ATAMIPFLENDDANRALMGANMQRQAVPLLRTQAPLIGTGMEYKAARDSGVLILARNAGV
VEKVTATEIKVRTERGTLDNYKLLKYLRSNQGTCINQKPIVYKGEQVEKGQVLVDGPATD
QGELALGFNVLVAFMPWEGYNYEDAILLSEKIVKDDIYTSIHIEEYECDARDTKLGPEEI
TRDIPNVAEEVLKDLDDRGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKA
REVRDTSLRVPHGEAGKIVDVKVFSRENGDELPPGVNFLVRVYIAQKRKISEGDKMAGRH
GNKGVVSRIMREEDMPFLPDGTPVQIVLNPLGVPSRMNIGQVLETHLGMAAAAFGMQIRT
NAPGVAERLKEVGYDSDKHGLPKPGIAGINLATPVFDGAHEEEVFKTLKAAGLPEDGKTV
LYDGRTGEAFDNRVTVGWVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFG
EMEVWALEAYGAAYTLQELLTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQ
SIGLDVKILNEDAQEIMIDDTDEDINQVAKELELNIGVPVNTAPETHTRTASEIEPDLVD
DFDNPDEMEPLEEELDIIAEIGEMDEDVAEEIEIPGRKSVKKVKSKDKKPTQRDFLEELD
DEEIE
NT seq 3798 nt   +upstreamnt  +downstreamnt
atgtttaatcctgttccggttggcaaaaagatcagatatagttatgccaagatcaaagaa
gtactggacatgcccaatctgattgaaattcagaagaattcctataactggtttctaaag
gaagggctgcaagaaattttccatgatatttcgcctattcaggactttacaggtaatttg
gttctgacatttgaaaaatttacattaggcgaagccaagtatcacgttgaagaatgtaaa
gaacgcgacgttacttattcggctcctttacgtgtcaatgttcgattgattaatcgtgag
actggcgaaattaaagagcaagaagtatttatgggcgatttcccgctcatgacagaaaat
ggtacttttatcattaatggtgcagagcgggttattgttagtcagttggtacgttcccca
ggtgcgtattacaatgaaacaattgatgcaacaggtaaaaaactgtataactctacagtg
attccaaatcgtggtgcgtggttagaactcgaaacagatgccaatgatgtaatgtctgtt
cgggtagatcgcacacgaaaattaccagcaacagtattgattcgtgctttaggctacgcg
tcaaatgctgctattgcggaactgtttcatgatgatgtgagagttcgcgccactttggaa
cgggataataccaattccagagaagaggctctagttgaaatctataaaagattacgtcca
ggtgaacctcctaccgtagataatgctactcagttattagaatcactattttttgactct
aaacgttatgatttagcaactgtagggcgttataaattaaccaaaaaactaggctggcgc
cgtcgtttgatgggcaagactctttatcaggcaattgcaaatgcagaaacaggagaaatt
attgttcctgcagatacaatcgtggacgaaaaagttcttgatcagattgatcaaagtggt
gtctttgcaaatgcagctttgattgaagtaaaagtcaaactaaaagatggatcaccagtt
aaaatgctatgcaatcctgaattaccttacaatcatcggacaattaccagggaagatatt
ttagcttctgttaactatcttctcaatttgatggatggatttggtaatgtggatgatatc
gatcatttaggtaaccgccgcctgcgttcagtcggtgaattgctgcaaaatcagttccgt
atcggtttatctcgtatggaacgggtagtgaaagaacgtatgaccattcaagatgttgat
gtcattactccccaagcattgattaacatccgccctgttgtggctgctatcaaagaattc
tttggctccagtcagttgtcgcagtttatggatcagacaaatcctttggcagaacttact
cataaacgtcgtttaagtgccttgggacctggtgggctaagtcgtgaacgcgccggtttt
gaagtgcgtgacgtacatcactctcactatggtcgtatgtgtccaattgagacaccagaa
ggtccgaatatcggtcttattggttcattgtcaacctttggacgtattaacgagtttggt
tttattgaaaccccttaccgtaaaattgataaggaaaatcgtatcgtaacagaagatgta
cgatatttgacagctgatgaagaggatgaagtagtttgtgcgcaagcgaatgaaccgtta
aatgaaaatagctggtttgttgagccgcgagttaccgtacgtcatagacatgaaatttta
gttattcctgctgaaaaagttgactatatggatgtatcgccaaagcaggttgtatcaatt
gctacggctatgattccattcttagaaaacgatgatgcaaatcgtgccttgatgggcgcg
aatatgcaacgtcaggcagtacctttacttagaacacaggctccgctcattggaactgga
atggaatataaagctgccagagattctggtgttcttattctagctagaaatgccggtgta
gttgaaaaagttacagctactgaaattaaagtacgcacggaacgtggtacgttagataac
tataagttgctgaaatatttgcgttctaatcaaggaacttgcattaatcagaagccgatt
gtttataaaggcgagcaagtagaaaaagggcaggtattagttgatggacctgctaccgat
caaggtgaattagcattaggctttaatgtacttgtagctttcatgccatgggaaggttac
aattatgaagatgctattttactaagtgaaaaaattgtaaaagatgacatctacacttcc
atacatattgaagaatatgaatgtgatgccagagatacgaagttaggaccggaagaaatt
actcgtgatattccgaatgtggctgaagaggtactaaaagatcttgatgatcgcggtatc
atacgcattggcgctgaagtgcgaccaggggatattctagtgggtaaagtgactccaaaa
ggtgaaacagaattaacggcagaagaacgcttgcttcgtgccatctttggtgagaaagct
cgtgaagttcgagatacatcattgagagtgccacatggcgaagctggtaaaattgttgac
gtaaaggtattcagccgggaaaatggtgatgaattaccaccaggtgtgaatttcttagta
cgtgtatatattgcccaaaaacggaagatttccgaaggggataagatggcagggcgtcat
ggtaataagggtgttgtttctcgcattatgcgtgaggaagatatgccgttcttgcctgat
ggcacgccagtacagattgtgttaaatccattgggtgtaccatcacgtatgaatatcgga
caggtactggagacccatttaggaatggctgctgctgcttttggtatgcaaatcagaacc
aatgctcctggtgttgcagaacgactgaaggaagttggctatgactctgataaacatggt
cttcctaaaccggggattgctgggattaacttagcaactccagtatttgatggggctcat
gaagaagaggtctttaaaacattaaaagcagctggattgccggaagatggtaaaactgtc
ttatatgatggacgtacaggggaagcttttgataaccgcgttaccgtaggttgggtatac
atgttgaaattggcccatttggttgatgacaaaattcatgcacgatctactggtccttac
tctttggttacacaacagccattgggtggtaaagcacaattcggtggtcagcgttttggg
gaaatggaagtttgggcattagaggcatatggtgccgcttataccttacaggaactctta
acggtaaaatccgatgatgtagtagggcgtgtaaaaacctatgaagcgattgtgaaaggt
gaaaacatacctgaacctggagtgcctgaatcctttaaggttttaattaaagagcttcaa
agtattgggcttgatgttaaaatcttaaatgaagatgcacaagaaattatgattgatgac
actgatgaagatattaatcaagtggctaaagaacttgaacttaatattggtgttccagtg
aatactgcacctgaaactcatactcgcactgctagtgagattgagccagatctggtggat
gattttgataatcctgatgaaatggaaccattagaagaagaattagatattatagcggaa
atcggtgagatggatgaagatgtagcagaggaaatcgaaatacctggacgaaaatccgtc
aagaaagtaaaaagtaaagataagaaaccaacacaacgtgatttcttagaagagttagac
gacgaggaaattgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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