KEGG   Pestalotiopsis fici: PFICI_12089
Entry
PFICI_12089       CDS       T04924                                 
Name
(RefSeq) ATP-dependent RNA helicase ded-1
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
pfy  Pestalotiopsis fici
Brite
KEGG Orthology (KO) [BR:pfy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfy03019]
    PFICI_12089
   03041 Spliceosome [BR:pfy03041]
    PFICI_12089
   03036 Chromosome and associated proteins [BR:pfy03036]
    PFICI_12089
Enzymes [BR:pfy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PFICI_12089
Messenger RNA biogenesis [BR:pfy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     PFICI_12089
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     PFICI_12089
Spliceosome [BR:pfy03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    PFICI_12089
Chromosome and associated proteins [BR:pfy03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    PFICI_12089
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 19277102
NCBI-ProteinID: XP_007838861
UniProt: W3WU86
Position
Unknown
AA seq 690 aa
MADQINMGGLSLADQQQPRSYIPPHMRGRVGGGPGPAGPPAGVPAGVPPVGPPGAGPAIN
GGLNNSAWAGNNNYDARPAPGGWTGPTPGGPDFPPPQQQQGGRPGGWNNNRPGFDRNAYG
NPGAGGGGGGHARGSGDGQWRDGKHIAGPANPRVERELFGTADDPSKQHTGINFEKYDDI
PVEASGHDVPEPVLTFSNPPLDDHLIRNIELSRYKMPTPVQKYSIPIVMGGRDLMACAQT
GSGKTGGFLFPILSQAFQTGPAATPAAGGGYGRQRKAYPTSLILAPTRELVSQIYDESRK
FAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDE
ADRMLDMGFEPQIRRIVEGEDMPTVQNRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRV
GSTSENITQKVEYVEDVDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPAT
SIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI
GRTGRAGNTGHSTAFFNRGNRGVVRELIDLLKEANQEVPSFLETIARESSFGGRGGRGGR
SGGGRGQGANRDFRKFGGGGGGGGSGFGGGFGGPPSGGFSGSGGGGGGYGGAPGGGYSGG
GAGGGGGYGGGYGGGGYGNPTGGGGQASWW
NT seq 2073 nt   +upstreamnt  +downstreamnt
atggctgatcaaatcaacatgggcggcctcagcctggccgaccagcagcagcctcgctcc
tacatccctcctcatatgagaggtcgcgtcggtggcggccccggtcctgctggtcctccc
gctggcgttcccgctggtgttcctcccgtcggtcctcctggtgctggccctgccatcaac
ggtggcctgaacaacagcgcctgggctggtaacaacaactacgacgctcgccctgcaccc
ggtggttggaccggtcctacccccggtggccccgacttcccccctcctcagcagcagcaa
ggcggccgtcctggcggctggaataacaaccgccccggctttgatcgcaatgcttacggc
aatcctggtgccggtggaggtggaggtggccacgcccgtggctctggtgacggacagtgg
agagacggcaagcacattgcaggtcctgccaaccctcgtgtcgagcgcgagcttttcggt
accgccgacgacccttccaagcagcacactggtatcaactttgaaaagtacgatgacatt
cccgtcgaagcatccggtcatgacgttcccgagcctgtcctgaccttttccaaccctccc
ctcgacgaccacttgatccgaaacattgagctctctcgctacaagatgcccactcccgtc
caaaagtactcgattcccattgtcatgggtggacgtgatctcatggcttgtgcccagact
ggttccggaaagactggtggtttcctgttccccattctgtctcaggctttccagactggt
cctgctgctacccctgctgctggtggtggttacggtcgtcagcgcaaggcttaccccacc
tcgctgatcctggctcccactcgtgagctggtctctcagatctacgacgagtctcgcaag
tttgcctaccgatcctgggttcgcccttgcgtcgtctacggtggtgccgacattggctcg
cagctccgccagattgagcgtggttgcgatctgctcgttgctactcctggtcgtcttgtc
gatctcatagagcgtggtcgcatttccctccagaacatcaagtacctcgttctcgacgag
gctgatcgcatgctggacatgggtttcgagcctcaaattcgtcgtattgtggagggtgag
gacatgcctactgtccagaaccgccagaccctcatgttttcggccaccttcccccgagac
attcagatgctggcccgcgacttcttgaaggattacatcttcttgtctgttggtcgtgtt
ggttccacttccgagaacattactcaaaaggttgagtacgtcgaggacgttgacaagcgt
tccgtcttgctggacattctgcacacccacggcgcaggtcttaccctgattttcgtcgag
accaagcgcatggccgactcgctgtcagacttcctcatcaaccaaaacttccccgccacc
tccatccacggtgaccgtacccagcgcgagcgtgagcgtgccctcgagatgttccgcaac
ggacgttgccccatcctcgtcgccactgctgtcgctgctcgtggtctcgatattcccaac
gtcacccacgttgtcaactacgatctgcctaccgacattgacgactacgtccacagaatt
ggtcgtaccggtcgtgccggaaacactggtcactccactgcctttttcaaccgtggcaac
cgtggtgttgtccgcgagctgattgacctgctcaaggaggccaaccaggaggttcccagc
ttcctggagaccattgcccgcgagagctcctttggcggccgcggtggccgtggtggtcgc
tccggcggcggtcgtggccagggtgccaaccgtgacttccgtaagtttggcggaggtggc
ggaggtggcggctccggctttggtggtggctttggtggtccccccagcggtggcttctct
ggaagcggtggcggcggcggcggctacggcggcgctcctggtggtggctacagcggtggc
ggtgccggcggcggaggtggttatggtggtggctacggtggtggtggttacggcaacccc
actggtggcggtggtcaggcctcttggtggtaa

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Ontology (5)   
   KEGG BRITE (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (46)   
   KEGG ORTHOLOGY (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (60)   

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