KEGG   Pseudomonas fragi: AV641_21460
Entry
AV641_21460       CDS       T04285                                 
Name
(GenBank) recombinase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
pfz  Pseudomonas fragi
Pathway
pfz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AV641_21460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfz03019]
    AV641_21460
   03400 DNA repair and recombination proteins [BR:pfz03400]
    AV641_21460
Enzymes [BR:pfz01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AV641_21460
Messenger RNA biogenesis [BR:pfz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AV641_21460
DNA repair and recombination proteins [BR:pfz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AV641_21460
SSDB
Motif
Pfam: Helicase_C DEAD RecQ_Zn_bind ResIII PorA SNF2-rel_dom S-methyl_trans AAA_22
Other DBs
NCBI-ProteinID: AMB81460
Position
complement(4788439..4790382)
AA seq 647 aa
MHNTLEQVFGYPQFRDGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLQRHGIAAASIDSAQSRDDASAVMARAKAGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQLQFNIPQALLLTATATPNVIADM
QSKFAIAEADVITTGFYRANLNLWVEPVTGAAKRQRLVQWMGERSGQPSIVYVTLQKTAE
QIAAHLNQNGISANAYHAGLPHDQREGIQRQFMGGQLNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELQGIRCVLEELR
AAIPEGQWEFLLGPLADQSNIRQLPLKTLLVQLELRGLIAPRYAYFAEYRFKFLIEPDAL
LARFEGERQQFVSAIIQTSSRARTWATVNFDTLYSQHQADRNRVVKALDYFQEKGWIELE
SKQMTEVYSLLLTEFDVEALSLELHEYFTAHERGEIVRIHAMLALFASDTCLSYRLAHYF
GDGRAPQQCGHCSVCAGQVAHLPEPPALAPLVDKNFEALCAAFIHRHQEFTASYPPPERL
TRFLCGISVPLFTKMKARGIAGFAALENYPYAEVREWAAQHQGPESL
NT seq 1944 nt   +upstreamnt  +downstreamnt
atgcacaacaccctggaacaggttttcggttatccacagtttcgtgacgggcaagaggcg
gcgatcagtgccgtgctggccgggcgttcggcggccgcgatttttccgacgggctcgggc
aagtcgctgtgctaccagctgccggccttgctgctgccgcacctgacgctggtggtgtcg
ccgctgctggcgctgatgcaggaccagttggcgtttttacagcgccatggcattgccgcc
gccagcattgattcggcgcaaagccgtgatgacgccagtgcggtcatggcccgggccaaa
gcgggtgaattgaagatcctgatgatttcggttgagcgtctgaagaacgagcgttttcgc
aattttttgcagcaggtgccgatttcgttactggttgtggacgaggcccactgtatctcc
gagtgggggcataactttcgcccggactacttgaagctgccggactaccagcttcagttc
aacatcccgcaagccttgctgctcacggcaacggccacgcccaatgtgattgccgacatg
cagagcaaattcgcgatcgccgaggcggatgtgatcaccaccggtttctatcgcgccaac
ctcaacctgtgggtcgagccggtcaccggggccgccaagcgccagcgcctggtgcaatgg
atgggcgagcgcagcggccagccgagcattgtctacgtcaccctgcaaaagactgcggag
cagatcgccgcgcatctgaaccagaacggcatcagcgccaacgcttatcacgccggtttg
ccccacgatcagcgcgagggcattcaacgtcagttcatgggcgggcaattgaattgcatc
gtggccaccatcgcctttggcatgggcatcgataaaagcgacatccgcaacgtagtgcat
ttcgacctgcccaagtcgatcgaaaactacagtcaggaaatcggtcgcgccgggcgtgat
ggccagccatcggactgcctggttctggccaatcgtgacagtctcaacgtgctggaaaat
tttgtgtacggcgacacccccgaattgcagggcatccgctgtgtgcttgaagaactgcgt
gcagccatccccgaagggcagtgggaattcttgctggggcccttggccgatcagagcaat
attcgccagcttccgctcaagaccctgctggtgcagctggaattgcgtggcctgattgct
ccgcgctatgcgtattttgccgagtaccgtttcaagttcctgattgagcccgatgcactg
ctggccagattcgagggtgagcgccagcagtttgtctcggccattatccagacctccagc
cgtgcccggacctgggccacggtcaatttcgacaccctgtacagccagcatcaggccgac
cgtaaccgggtggtcaaagcactggattatttccaggaaaagggctggatcgagcttgaa
agcaaacagatgaccgaggtttacagcctgttgctgacagagtttgacgtcgaggcgctg
agcctggagctgcatgagtacttcacagcccatgagcgtggcgagattgtgcgcattcac
gccatgttggcattgttcgccagtgacacctgcttaagctatcgcttggcgcactacttc
ggtgacgggcgggcaccgcaacaatgcgggcattgctcggtgtgtgccgggcaggtcgcg
cacttgcctgaaccccctgcgctggcgccgcttgtggataaaaactttgaagcgctgtgc
gctgcttttatccacaggcatcaggaattcaccgcaagttatcccccgccggaacgcctg
acccggtttttatgcgggatcagcgtgccgttgtttaccaaaatgaaagcccgggggatt
gccgggtttgcggcattggaaaactacccctatgccgaggtgcgggaatgggccgcacaa
catcaaggcccagaatcattgtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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