KEGG   Porphyromonas gingivalis W83: PG_0395
Entry
PG_0395           CDS       T00145                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pgi  Porphyromonas gingivalis W83
Pathway
pgi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pgi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PG_0395 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pgi03021]
    PG_0395 (rpoC)
   03400 DNA repair and recombination proteins [BR:pgi03400]
    PG_0395 (rpoC)
Enzymes [BR:pgi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PG_0395 (rpoC)
Transcription machinery [BR:pgi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PG_0395 (rpoC)
DNA repair and recombination proteins [BR:pgi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PG_0395 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C RnfC_N Nse5
Other DBs
NCBI-ProteinID: AAQ65600
UniProt: Q7MX26
Position
429064..433365
AA seq 1433 aa
MAFRKENKIKNNFSKIRITLASPEEILENSFGEVLKPETINYRTYKPERDGLFCERIFGP
VKDFECHCGKYKRIRYRGIVCDRCGVEVTEKKVRRERMGHIHLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDAIIYYERYVVIQPGVAEGLSQLDLLSEEEYLDKLDEIERTHKGNQNLE
DTNPDKFIAKIGAEAIYDLLCRVDLDSISYELRDRANTDGSQQRKTEALKRLQVVESFRA
SKGVNRPEWMVMKVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKA
PEVILRNEKRMLQEAVDSLFDNSRKSSAVKSDNNRPLKSLSDSLKGKQGRFRQNLLGKRV
DYSARSVIVVGPELKMHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPV
IWDILEYVMKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLSCTAFNADFDGDQMA
VHLPLSNEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYITKLRPNTKGHGLIF
YGPEEATIAYNEGKVDIHAPIKVYVEDYENGELVRRMVETSVGRLMVNEYVPKKVGYVNE
VLGKKALRDIIGSVIKICGVATTAKFLDDIKNLGYYMAFKGGLSFNLADVLIPDEKDQLI
QEGYTAVEQIMQDYSMGFITFNERYNQIIDTWTHINGRLSNVLIKQLSSDNDGFNSVFMM
MDSGARGSKEQIRQLSGMRGLMAKPQKSGAEGGQIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSHDVIITEEDCGTLRGLLTTELKQNEDVVASLYERI
LGRVSVHDIIHPTTGDIIVRAGEEIREQAAQIIEDSPIEAVEIRSVLTCESKKGVCAKCY
GRNLATNRMVQRGEVVGVIAAQSIGEPGTQLTLRTFHVGGIASNVATENSLLSKYDGILE
FEELRAVDVTDESHQVVVSRMTELRIADPNTGIILANHNIPYGAKLFFRQGDAVKKGDKI
IEWDPFNAVIVSEVAGTLSFEGVVENVTFKMESDETTGLKEKIIIESKDKTMAPYARIID
ENGEMLKNYSLPMGAHVVKDDGDTVKVGEILVKIPRSVGKAGDITGGLPRVTELFEARNP
SNPAIVSEIDGEIGFGKLKRGNREITVTSKLGEEKKYLIPLSKQLLVQENDFVRAGTPLS
DGAITPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQMMRKVEIVDPGD
TLFLEQQVVDKFEVMEENDRIWGKKVVIDAGDSQVLKAGQIVTARKLRDENSMLKRKDLK
IVKVRDAKSATASQILQGITRAALQTKSFMSAASFQETTKVLNEAAICGKTDYLEGLKEN
VICGHLIPAGTGLRDYEKLVVMHRDDYEKATAERKSFLSVPTAEPAMEEAPSE
NT seq 4302 nt   +upstreamnt  +downstreamnt
atggcttttagaaaagaaaataagataaagaacaacttctcgaagattcgtatcaccttg
gcttctcctgaagagattcttgagaactcattcggagaagtattgaagccggagacgatc
aattatcgtacctacaagccggaacgagatggcctattctgtgaacgcatcttcggtccg
gttaaggattttgaatgtcactgtggcaaatacaagcgtattcgataccgtggtatcgta
tgtgatcgctgtggagtcgaggtaacggaaaagaaagttcgccgtgagcgtatggggcac
atccatttggtcgtacctgttgctcatatttggtatttccgttctcttccgaataagatc
ggctatttattaggactacctaccaagaagttggatgccatcatttactatgaacgctac
gttgttattcaaccgggtgttgccgaagggttgagtcaacttgatctattgtcagaggaa
gaatacctcgacaagcttgatgaaatagagcgcactcacaagggcaaccaaaatttggag
gataccaatccggacaaatttattgccaaaattggggcagaggctatttatgatcttcta
tgtcgtgtggatctggattctatttcctacgaattgcgagatcgtgccaatacagatggt
tcgcagcaacgtaaaacagaagcacttaaacgtcttcaagtcgttgaaagtttccgtgca
tccaaaggtgtgaatcgtcctgagtggatggttatgaaagtgattccggttatcccgccg
gatcttcgtcctttagttcctttggatggtggacgtttcgctacttccgatctgaacgac
ttgtaccgtcgcgttattatccgtaacaaccgtctcaaacgattgatcgagatcaaagct
cctgaagttatcttacgcaatgaaaagcgcatgctacaggaagcggttgactcccttttc
gacaactcgcggaagtcaagtgcggttaagtctgacaacaatcgtcctttgaaatccctt
tctgatagtctcaaaggcaaacaaggtcgtttccgtcagaacttgcttggtaagcgtgtc
gattattctgctcgttccgttatcgttgttggtccggagcttaagatgcatgagtgcgga
cttccgaaagacatggcagccgaactctacaaacccttcatcattcgcaagttgattgag
cgtggcatagtgaagacagtcaagagtgccaagaagattgtagaccgtaaagagcctgtt
atctgggatattttggagtacgtgatgaaaggacatccggtccttctgaaccgtgcaccg
actcttcaccgactaggtattcaagcattccaacccaaactgatagaaggaaaagcaata
cagttgcatccattgagttgtactgcatttaatgcggacttcgatggagaccaaatggct
gtacaccttcctctgagcaacgaagctattcttgaggcgcaattgcttatgttggcttca
cataacattcttaaccctgccaatggagcaccgattaccgttccttcacaggatatggta
ttgggactctattatattaccaagctacgtcccaataccaaagggcacggcctgattttc
tatggccctgaagaagcgacaatagcctataacgagggtaaagtcgatattcatgcgccg
attaaggtctatgtagaggattacgagaacggagaacttgttcgtcgtatggtagagaca
tccgtagggcgactgatggtaaacgaatatgtaccgaagaaggtaggctatgtcaatgaa
gtactcgggaaaaaagctctacgagatattatcggtagcgtaatcaagatctgcggagta
gctacaacagccaaattcttggatgatatcaagaatttgggttactacatggcttttaag
ggtggcttgtctttcaacttggcagatgtgcttattcctgatgagaaagaccaattgatc
caagaaggttacactgccgtcgagcagattatgcaagactacagtatgggattcatcacc
tttaatgaacgatacaatcagattatcgacacatggacacatatcaatggccgtttgtca
aatgttctgatcaagcaactcagttcagacaatgacggattcaactctgtcttcatgatg
atggattccggagcacgtggttccaaggaacagattcgtcagttgtcaggtatgcgtgga
ttgatggccaagccccaaaagagtggagccgaaggaggtcagattattgaaaaccccatt
ctttcaaacttcaaggaaggactctcggtacttgaatactttatttctactcatggtgca
cgtaaggggcttgccgataccgcattgaaaacggcagatgctggttatctcacccgtcgt
cttgtggacgtttctcacgatgttattatcacagaggaagattgtggcacgctacgcgga
ctgcttactaccgagctaaagcaaaacgaagatgtcgttgcttccttgtacgaacgtatc
cttgggcgcgtctctgttcacgatattatccatcctactacaggggatataatcgttaga
gctggagaagagatcagagagcaggcagcacagattatcgaagattcacctatcgaagct
gttgaaatccgttctgttctcacctgcgaatccaagaaaggagtatgtgccaagtgctat
ggtagaaatcttgctaccaaccgcatggtacaacggggtgaggtcgtaggcgttattgca
gctcagtccattggagagccgggtacacagcttactctccgaacattccacgtcggaggt
atcgcatccaatgtggcaacggagaatagcttgctctccaaatatgatggtatcttggaa
ttcgaggaactacgtgctgtggatgtaacagacgaatcgcatcaggtcgtagtgagtcgg
atgactgaattgcgtattgccgatccgaataccggtatcattttggccaatcacaatatc
ccctacggtgcaaaattgttcttccgccaaggtgatgcagtcaagaaaggtgacaaaatc
atcgaatgggatccgttcaatgcggtcatcgtatcggaagtagcaggaacactctctttc
gaaggtgtagtggagaatgtaactttcaagatggaaagcgacgagacgaccggtctgaaa
gaaaagattatcatcgaatccaaggataagacgatggctccctatgctcgaataatagac
gagaatggagagatgctcaagaactatagtctcccgatgggtgcccacgttgtgaaagac
gatggcgacacagtcaaagttggcgagattttggtgaagattcctcgatcagtgggaaaa
gccggtgacattaccggtggtttgcctcgtgtcaccgagctattcgaagcacgaaatccg
tcgaatcccgcgatcgtttccgaaatcgatggggaaatcggctttggcaagttgaaacga
ggaaaccgtgagatcactgttacctccaagctgggtgaagagaaaaaatatctaatcccc
ttgtccaagcagcttcttgtccaagaaaacgacttcgttcgtgcaggaacaccgctttct
gacggagctattactccggctgatattctggcaatcaaaggtcccacggcagtacaggag
tacatcgtcaatgaagtacaagacgtgtataggcttcagggtgtgaagatcaatgataag
cacttcgaagttattgttcgccagatgatgcgcaaggttgaaattgtcgatccgggtgac
accctcttcctcgaacagcaggtagtcgataagttcgaagtaatggaagagaacgatcgc
atctggggtaagaaggtagttattgatgccggagatagccaagtgctgaaagccggacag
attgttacggcacgcaagctccgtgatgagaacagtatgctcaagcgtaaggatctcaag
atcgtgaaagtgcgcgatgccaagtcagctactgccagccagatactccaaggtattacc
cgtgcggcactgcagaccaagagcttcatgtccgcggcctctttccaagagacaaccaag
gtgctgaatgaagcagctatctgtggtaagactgactacctggaaggactgaaggaaaac
gttatctgcggtcacctcattccggccggtactggtttgcgcgattacgagaagctcgtc
gttatgcatcgtgacgattacgaaaaggcgacagccgagcgtaagagtttcctttccgtg
cccacagccgaaccggcaatggaagaagcaccatcggaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (39)   

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