KEGG T01516: PGTDC60

Porphyromonas gingivalis TDC60: PGTDC60_0600

Entry

PGTDC60_0600      CDS       T01516

Symbol

gyrB

Name

(GenBank) DNA gyrase, B subunit

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

pgt Porphyromonas gingivalis TDC60

Brite

KEGG Orthology (KO) [BR:pgt00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pgt03032]
    PGTDC60_0600 (gyrB)
   03400 DNA repair and recombination proteins [BR:pgt03400]
    PGTDC60_0600 (gyrB)
Enzymes [BR:pgt01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     PGTDC60_0600 (gyrB)
DNA replication proteins [BR:pgt03032]
Prokaryotic type
  DNA Topoisomerases
   PGTDC60_0600 (gyrB)
DNA repair and recombination proteins [BR:pgt03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      PGTDC60_0600 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c Toprim_4 HATPase_c_3

Other DBs

NCBI-ProteinID:

BAK24769

Position

628493..630457

AA seq 654 aa
MNEDIKKNTSASEYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEAL
AGYCDNVEVIIEEDNSITVRDNGRGIPVDYHEKEGKSALEVVLTVLHAGGKFDKGSYKVS
GGLHGVGVSCVNALSTYLRAEVYRNGKIHMQEFSCGKPLHDVEVIGSTERTGTTIQFKPD
SSIFSVTEYQYSILAKRLRELSYLNAGITLTLTDKRTLKEDGSGYKQDVFRSEEGLKEFV
RHLDRMKEPLVDNVIHIVTEKQGIPVEVAMTYNTSYLENVYSYVNDINTIEGGTHLAGFR
RGLTRTLKKYATDSKLLDKVKVEITGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVT
GAVDMAVSEALEYYLEEHPKEAKLIVDKVVLAATARQAARKAREMVQRKSPLSGGGLPGK
LADCSSKDPEQCELFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMQHKVFESEE
IRNIYTALGVTIGTEEDSKALNLSKLRYHKVVIMTDADVDGSHIATLILTFFFRNMRTLI
ENGYVFIATPPLYLCKKGKEQEYCWTEQQRQAFVDRYADGNESRVHVQRYKGLGEMNEEQ
LWETTMDPEKRTLRKVTIENAAEADAIFSMLMGDEVGPRREFIEENATYARIDA

NT seq 1965 nt +upstreamnt +downstreamnt
atgaacgaagacattaaaaagaatacctcggcatcggaatattcggccagcaatatccaa
gtattggaaggtctggaagctgtccgcaagcgaccggccatgtatataggtgacatcagc
gaaaagggattgcaccatttggtctatgaggttgtagacaactcgatagacgaagcttta
gccggatactgtgacaatgtagaggtaatcatagaagaagataactccattacggttcgt
gacaatggtcgcggtattccggtggactatcacgagaaagaaggtaagagtgctctcgaa
gtggttttgaccgtattgcatgccggaggtaagtttgacaagggttcatacaaagtctcg
ggcggtttgcatggagtgggcgtttcttgtgtgaatgcactttccacatatttgcgtgca
gaggtgtatcgtaatgggaagatccatatgcaggagttcagctgtggcaagcccttgcat
gatgtggaggtgataggctccacggagcgtacggggacgactattcagttcaaaccggat
agctctatcttctctgttacggaataccaatactccatactggccaagcgtctccgcgaa
ctttcttatctgaatgcggggattacacttacgctgacggataaacgaacgctcaaggaa
gacggcagtggctacaagcaagatgtattccgttcggaagaaggattgaaggagtttgtc
cgtcatcttgaccgtatgaaagagccgctggtggacaacgttatccatatcgtcaccgag
aagcagggcattcccgtggaggtagccatgacatataatacttcctatctggagaatgta
tatagctacgtcaatgacatcaatacgatcgagggcggtacgcatttggccggattccgt
cgtggacttactcgaactttgaagaaatatgccacagactccaaactcctggataaggtg
aaggtggagatcaccggcgacgacttccgcgagggattgactgccgtgatcagtatcaaa
gtggccgaacctcagttcgaaggacagaccaagaccaagctcggtaacaatgaagtgacc
ggtgctgtcgatatggctgtaagcgaagcactcgaatactatctggaggagcatccgaaa
gaagccaaactgatcgtggacaaagtcgttttggcagcaaccgctcgtcaggcagcccgt
aaggcccgcgaaatggtgcagcgcaaatcgcccttgtccggtggaggattgccgggtaag
cttgccgactgctcatccaaagacccggagcagtgcgaactcttccttgtcgagggtgat
tcggccggcggaacggccaagcaggggcgcgaccgcgagtttcaggctatcctgccactg
aggggaaagatcctcaatgtggagaaagccatgcaacacaaggtattcgaaagcgaagaa
atccgcaacatatataccgctttgggtgtgacgatcggaacggaagaggacagcaaagcc
cttaacctttccaaacttcgctatcataaagtggtgatcatgaccgatgccgatgtggac
ggtagccatatcgctacgcttatccttacgttcttcttcaggaatatgcgtacgctcata
gaaaacggttatgtcttcatcgctactcctcctctctacctttgcaagaaggggaaagag
caagagtattgttggacagagcagcagcgtcaagcgtttgtcgatcgttatgccgatggt
aatgaaagccgtgtgcatgtacagcgttacaagggtcttggtgagatgaacgaggagcag
ctttgggagacgacgatggatccggagaagaggacgcttcgtaaggtgacgatcgagaat
gctgctgaggcagacgccatattctccatgctcatgggagacgaagtaggtccgcgcagg
gagtttatagaagaaaatgctacttatgcaagaatagatgcttag

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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