KEGG T01458: SL003B

Polymorphum gilvum: SL003B_3229

Entry

SL003B_3229 CDS T01458

Definition

ATP dependent DNA ligase family protein

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

pgv Polymorphum gilvum

Pathway

pgv03410	Base excision repair
pgv03420	Nucleotide excision repair
pgv03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:pgv03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pgv03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:pgv03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N mRNA_cap_enzyme

Other DBs

NCBI-GI:

328544846

NCBI-GeneID:

10420561

UniProt:

F2IXM8

Position

complement(3477361..3479013)

AA seq 550 aa
MHAFARLLDRLSFEPRRTAKEALLVDYFRTTPDPDRGYALAALAGSLDFPHAKPALLKGL
VTERVDPVLFGLSYDFVGDLSETIALMWTAPAGRPDDGAEPLALRDVVSGLRGAGRTQAP
ALLSTWLDRLDEIGRWALLKLITGGLRVGVSARLAKTAVARLGRLEPDDIEEIWNGLATP
YAELFAWAEGRADRPRNVDPAPFRPPMLAHPVNEEKDFAALDAADFAAEWKWDGIRVQAA
AGREPGGMHGRRLYSRSGEDISAAFPDLLDHLGFDAAIDGELLVVRDGAVQPFSDLQKRL
NRKSAGARIIADYPVAIRAYDLLAVDGEDLRSLPFHARRTRLERFVAELASPRIDLSPLV
PFDGWAELATARHEPGRLLGEADAAAVEGVMLKRRAAPYLPGRPKGEWFKWKRDPFLIDA
VLMYAQRGHGKRSSFYSDYTFGVWRGAPDARELVPVGKAYFGFTDEELREIDRFVRANTQ
NRFGPVREVVHTPERGLVVEVAFEGLNRSGRHKSGLAMRFPRISRLRWDKIPAEADRIDT
LEALLSATRA

NT seq 1653 nt +upstreamnt +downstreamnt
atgcacgcctttgccagattgctggatcgcctgtccttcgagccgcgccgcacggcgaag
gaagcgctgctcgtcgactatttccgcacgactcccgatcccgaccgcggctatgccctg
gccgcgctggccggcagtctcgatttcccccatgccaagccggcgctgctcaaggggctg
gtgaccgaacgggtcgatccggtgctgttcggcctgtcctacgatttcgtcggcgacctg
tcggagaccatcgccctcatgtggactgccccggcggggcgcccggatgacggggccgag
ccactggcgctgcgcgatgtcgtttccggcctgcggggagccggcaggacgcaggcgccg
gcgcttttgtcgacctggctcgaccggctcgacgagatcgggcgctgggcgctgctgaaa
ctgatcaccggcggcctgcgcgtcggcgtctcggcgcgcctcgccaagacagcggtcgcc
cgcctcggccggctcgagcccgacgacatcgaggagatctggaacgggcttgcgacgccc
tatgcggaactgttcgcctgggccgaagggcgcgcggaccggccgcgaaatgtcgatccg
gctccgttccgaccgcccatgctggcccatcccgtgaacgaggagaaggattttgccgcg
ctcgatgccgccgattttgccgctgaatggaaatgggacggcatccgcgtccaggcggcg
gcgggccgggagcctggaggcatgcacggccggcgcctttattcgcgcagcggcgaggac
atttcggccgccttcccggacctgctcgaccatctcggcttcgatgcggcgatcgacggc
gaactgctcgtcgtgcgcgacggcgcggtgcagcctttctccgacctgcagaagcggttg
aaccgcaagagcgcgggagcacgcatcatcgccgattatccggtcgccatccgcgcctac
gatctgttggcggttgacggcgaggacctgcgctccctgccgttccatgcgcggcggacg
cggctcgaacgcttcgtcgccgagcttgcctcgccgcgcatcgacctgtcgccgctggtg
ccgttcgacggctgggcggagcttgcaaccgcccgccacgaacccggccgcctgcttggc
gaggccgatgccgccgccgtcgagggggtcatgctgaagcggcgcgcagcgccctacctt
cccggccggccgaagggcgaatggttcaaatggaagcgcgacccgttcctgatcgacgcg
gtgctgatgtatgcgcagcgcggccacggcaaacgctcgtcattctactccgactatacc
ttcggggtctggcgcggcgcgcctgacgcgcgcgaactcgtgccggtcggcaaggcctat
ttcggcttcaccgacgaggaactgcgcgagatcgaccgcttcgtgcgcgccaacacgcaa
aaccgcttcggcccggtccgggaggttgtccacacgccagaacgcgggcttgtcgtcgaa
gtcgccttcgaggggctgaaccggtccgggcggcataagtcgggtctcgccatgcgcttt
ccgcgcatttcgcgcctgcgctgggacaagatcccggccgaggcggaccgtatcgacacg
ctggaggccctgctgtcggcgacgcgcgcctga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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