KEGG   Pseudoalteromonas translucida TAC125: PSHAa0990
Entry
PSHAa0990         CDS       T00282                                 
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, cold shock protein A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
pha  Pseudoalteromonas translucida TAC125
Pathway
pha03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pha00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PSHAa0990 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pha03019]
    PSHAa0990 (deaD)
   03009 Ribosome biogenesis [BR:pha03009]
    PSHAa0990 (deaD)
Enzymes [BR:pha01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     PSHAa0990 (deaD)
Messenger RNA biogenesis [BR:pha03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PSHAa0990 (deaD)
Ribosome biogenesis [BR:pha03009]
 Prokaryotic type
  rRNA helicases
   PSHAa0990 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII P-loop_SecA CMS1 AAA_22
Other DBs
NCBI-ProteinID: CAI86068
UniProt: Q3IJ60
Position
I:complement(1024855..1026705)
AA seq 616 aa
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSA
LRRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASIHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTNSDIAQVELPTAKIVEEKRIEALQAKLTLALENKDITFFNEVAANMAQKLELSAEDLA
GALLCLAQQQSPIKVEEVKIQPRERNERNDRNPRSNDRGDRGRRNERGGERGGERAERKP
RERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDNHSTVQLPK
NMPKDVLDHFQKVFICKRPMGLTITADQGPAEPRGERSERPAGGEKRSFNKDDSARGDKR
SGPRKERRPVSFTTPK
NT seq 1851 nt   +upstreamnt  +downstreamnt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttgaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagctcaaacgggtacaggtaaaaccgcagcatttgca
ctaccactattaaataatattgacccgtctgtgaaacagccacagatccttgtactcaca
ccaacccgtgagcttgcgatccaagttgctgaggcatttgaacaatatgctaaacatgtt
cgtggtattgaagtattggcactttatggtggccaaagctacagtatccaactaagtgca
cttcgtcgtggcgcgcaagttatcgtagctactccaggtcgcttaatcgatcatattaac
cgtggcactatcaagtttgatgctctacaagcacttgtacttgatgaagccgatgaaatg
ttacgtatgggctttatcgatgatgtagaaagcatcatggaaaaaacaccgcgcgaaaag
caaacatgtcttttctctgcgaccatgcctaagcaaattcaaaacatcagcagcaagtat
atgaacaatcctgaacaggttcatatctctgcgcgtaactcaactgtatcatcagtagag
caagtgttttggaatgcaagcattcataaaaataaagccattgttcgctttttagaagct
gagcaatatgaaggcgctattgttttcgtacgtacgcgtaacgatacagtacaacttgct
gaattattagagcgcgaaggtttctctgccgctccacttaacggtgacatgaaccagcaa
gcacgtgaacgcacagtagagcgcttaaaaagcggcatgctaaatgttgttattgcaaca
gacgtagcggcacgtggtctagatgttgaccgtttaagtttagttatcaactacgatatt
ccacaagattctgaagcctacgttcaccgtatcggccgtacaggtcgtgctggtcgtact
ggtaaagcaatcttattcgtaaaacataacgaacgttatttacttaaaaatatcattcgt
catacgaattcagatattgcacaagttgaattaccaacagctaaaattgttgaagaaaaa
cgtatcgaagcgttacaagccaagttaacacttgctcttgaaaacaaagatattactttc
tttaatgaagtagcagcaaacatggctcaaaagcttgaactttctgctgaagaccttgct
ggtgcgttactgtgtttagcacagcaacaatcaccaattaaggttgaagaagttaagatt
caacctcgcgaacgtaacgagcgcaatgatcgtaacccacgtagcaatgaccgtggtgat
cgtggtcgtcgtaacgaacgtggcggtgaacgtggtggcgagcgcgctgaacgtaaacct
cgtgagcgtaacagccgtgatgcaggtcctatggatacataccgtatcgaagtaggtcgt
gaacatggtgttcaggttaagaacattgttggcgctattgctaacgaagctgacatttca
agcaagtttattggtgatattcgtctacacgataatcacagcacggttcaattaccgaaa
aacatgcctaaagatgtacttgatcatttccaaaaagtgtttatttgtaaacgtcctatg
ggcttaacaatcactgctgatcaaggtcctgctgagccacgtggcgaacgctctgagcgt
ccagctggcggcgaaaaacgcagctttaataaagatgacagcgcacgcggtgataagcgc
agcggtcctcgtaaagaacgtcgcccagtaagctttacaacgccgaaataa

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