KEGG   Pedobacter heparinus: Phep_0849
Entry
Phep_0849         CDS       T00978                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
phe  Pedobacter heparinus
Pathway
phe03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:phe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Phep_0849
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:phe03021]
    Phep_0849
   03400 DNA repair and recombination proteins [BR:phe03400]
    Phep_0849
Enzymes [BR:phe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Phep_0849
Transcription machinery [BR:phe03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Phep_0849
DNA repair and recombination proteins [BR:phe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Phep_0849
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RnfC_N
Other DBs
NCBI-ProteinID: ACU03071
UniProt: C6Y278
Position
997921..1001724
AA seq 1267 aa
MANKVDQRVNFARSKHIIDYPDFLDVQLQSFREFFQIETTSDNRHTEGLFKVFAENFPIT
DSRNIFVLEFLDYFIDPPRYDIPECIDRGLTYSVPLKAKLKLSCNDAEHEDFETIIQDVY
LGTIPYMTPKGTFVINGAERVIVSQLHRSPGVFFGQSRHTNGTKLYSARVIPFKGSWIEF
ATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFDLADEVKVSKSGLKKYIGRKL
AARVLRKWVEDFVDEDTGEVVSIDRNEVILDRDTVLEDDHIDMIIDAGVKTIILSKDDGA
SQADYTIIYNTLQKDTSNSEKEAVENIYRALRNAEPPDEETARGIIERLFFSDKRYDLGD
VGRYRINRKLKMDTPDHVKVLTKADIIAIVKYLIKLINSKEEVDDIDHLSNRRVRTVGEQ
LYAQFGVGLARMARTIRERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHA
KINNLGFIETPYKKVENGIVSVDEPVIYLSAEDEDGKTIAQANAAYDDKGNFTTSRVKAR
YEGDFPVIEPEKLDLMDVAPNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEA
PIVGTGLEGRVARDSRTLINAEGDGVVEYVDANEITIKYVRNDSDRLVSFEGDSKTYKLI
KFKKTNQNTCINLKPIVKKGQKVVKGQVLCEGYATENGELALGRNLKVAFMPWQGYNFED
AIVISERIVREDIFTSLHIEEFELEVRDTKRGEEELTPDIPNVSEEATKDLDENGIIRIG
AEVKEGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKTPPSIRGVVIDTKLF
SRAKKTTKAEEKSAIEKLDKKYDLAVLNLKNELVDKLFQIVNGKTSQGVYNVYKELLFPK
GAKFTQKSLSDLEYAHINPYKWTTDDDKNEQIKMLLHNYGIRVNEELGAYKRDKFAISVG
DELPSGIVQMAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLN
PLGVPSRMNLGQIYETVLAWAGKELGVKFATPIFDGAKHDEVEDWIAKAGVPASGRTYLH
NGLTGEKFDQPTTVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEM
EVWALEAFGAANILQEILTVKSDDVIGRAKTYEAIVKGENLPTPGVPESFNVLVHELRGL
GLDITLD
NT seq 3804 nt   +upstreamnt  +downstreamnt
ttggcaaataaagtcgaccaaagagtaaattttgcacgtagtaagcatattatagattac
ccggattttctagatgtgcagttgcaatcattcagagaattttttcagatagaaaccact
tcggataaccgtcatacagagggtttatttaaggtatttgctgaaaattttccaatcaca
gattccagaaacatctttgttttggaattccttgattattttattgacccgccgcgttat
gatatacctgagtgtattgaccgtgggttaacttatagtgttccgttgaaagctaaatta
aagctttcgtgtaatgatgctgagcacgaagattttgaaaccattattcaggatgtgtat
ttagggaccataccttatatgaccccaaaaggtacatttgtgattaacggagcagagcgt
gtaattgtttcacaattgcacaggtcgccaggtgtgttcttcggccaaagccgccacaca
aatggaactaaattgtactcagcccgtgtaattccttttaagggttcatggatcgagttt
gctacagacgtaaacaacgtgatgtatgcttacattgatcgtaagaaaaagttcccggtt
accaccttattgcgtgctattggttacgattctgataaggacattttggagctgttcgat
cttgccgatgaggtaaaggtcagcaaatccggcttgaaaaaatatatcgggcgtaagctt
gcagcaagagtattgaggaagtgggtagaggattttgtagatgaagatactggtgaggta
gtttcaatagatcgtaatgaagtgatcttagacagggatactgtattggaagacgaccac
attgatatgatcattgatgctggtgtgaagacgatcatcttatctaaggatgatggtgct
agccaggctgattataccattatatataatactttacaaaaggatacatctaactctgaa
aaagaggctgttgaaaacatctatcgtgctttgcgtaatgcagaaccacctgatgaggaa
actgcaagaggtatcattgagcgtttgttcttttcggataaacgttatgacttgggtgat
gtgggcaggtaccgcattaaccgtaagttgaaaatggatactcccgatcatgtaaaagtt
ttaacgaaggctgatatcattgccattgttaagtacctgatcaaactgatcaactctaaa
gaagaggtggatgatattgatcacttgtcgaaccgtcgtgttcgtacagtaggtgagcaa
ttgtacgctcagtttggtgttggtctggcacgtatggcaagaaccatccgtgagcgtatg
aacatccgagataacgaggtatttacaccaactgatctgatcaatgcccgtactttatca
tcggtgatcaattcattttttggtacaaaccagttgtcacagttcatggaccagacgaat
cctttggcagagattacgcacaaacgtcgtttgtcggccttaggcccaggtggtctgtcg
cgtgagcgtgcaggtttcgaggtacgtgacgttcactatacgcactatggccgtttgtgt
acaattgaaacgccagagggaccaaacattggtttgatttcttctttgtgtgttcatgcg
aagatcaataatttaggtttcattgaaactccttataagaaagtagagaacggtattgtt
tcggttgatgaaccggtgatttacttatctgctgaggatgaagatggtaaaaccattgcg
caggcaaatgcagcttatgatgataaaggtaatttcaccacttcacgtgtaaaagcacgt
tatgaaggtgacttcccggttattgaaccagagaaactggacttaatggacgtggcgccg
aatcagattacttcaattgcagcttccttgattcctttccttgagcatgatgatgcgaac
agggccttgatgggatcgaacatgcaacgtcaggccgtaccattgttacgtcctgaggct
cctatcgttggtacaggtttggaaggtcgggtagcccgcgattcaagaacgctgattaac
gctgagggtgacggtgtggtggaatacgttgatgcaaatgagatcaccattaaatatgtg
cgtaatgacagtgatcgtttagtttcttttgaaggtgacagtaaaacctataagttaatc
aaattcaaaaaaaccaatcagaatacctgtatcaatttaaagccaattgttaaaaaaggc
cagaaggttgtaaaaggacaggtgttgtgtgaaggttatgctactgaaaatggtgagttg
gcattgggaagaaacttaaaagttgctttcatgccttggcagggatataactttgaggat
gcgattgtaatcagtgagcgtattgtccgtgaagatatctttacttctttacacatcgaa
gagtttgagctggaagtacgcgataccaaacgtggggaagaggaattgactccagatatt
cctaacgtttctgaggaagcaactaaggatcttgacgagaacggtatcatccgtatcggt
gctgaagtgaaagaaggtgatatccttattggcaagattacccctaagggagaatctgat
ccttcaccggaagagaagttgttgcgtgctatatttggagataaggcaggagatgttaaa
gatgcatctttgaaaacccctccatctatcaggggtgtggtaattgataccaaattgttc
tcaagagctaagaaaactactaaagcagaagaaaaatctgcaatagaaaaactagataag
aaatatgatctggctgttttaaaccttaagaatgagcttgtagataaattgttccagatt
gtgaacggtaaaacgtcgcagggggtatacaatgtttataaagagctattgttccctaaa
ggtgcgaaatttacgcagaaaagcttatcagaccttgaatacgcacacatcaatccatac
aaatggactactgatgacgacaagaatgagcagatcaaaatgttgttgcacaactacggt
attcgtgtaaacgaggagctgggtgcttacaaacgtgataaatttgccattagtgttggt
gatgaacttccatctggtattgtacagatggccaaggtttatgttgccaagaaacgtaag
ttaaaagtaggggataagatggccggacgtcacggtaacaagggtattgtagcccgtatt
gttcgtgatgaagatatgccattccttgaagacggaacacctgttgatattgtgttgaac
ccactgggtgtaccttcacgtatgaacttaggtcagatctatgaaactgtactggcatgg
gcaggtaaagaattgggtgtaaaatttgctactccgatttttgatggtgccaaacatgac
gaagtagaggattggatcgctaaggcaggagtacctgcttcgggcagaacttatttacat
aatggtttaacgggtgagaaatttgaccagccaacaactgtaggtatcatctacatgttg
aaattggggcacatggttgatgataagatgcacgcccgttcaatcggaccatactcattg
attacacagcagccattgggtggtaaagcccagtttggtggtcagcgttttggtgagatg
gaggtttgggcattggaagcatttggtgcggccaatatcctgcaagagatcttaaccgtt
aagtcggatgatgtgatcggaagggccaaaacctatgaagcgattgtaaaaggcgagaac
cttcctactccaggtgtaccggaatcatttaatgtattggtacatgagttacgtggatta
ggtttagatattacgttagactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (86)   
   KEGG ORTHOLOGY (1)   
   RefGene (83)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (101)   

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