KEGG   Pedobacter heparinus: Phep_0866
Entry
Phep_0866         CDS       T00978                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
phe  Pedobacter heparinus
Pathway
phe03030  DNA replication
phe03430  Mismatch repair
phe03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:phe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Phep_0866
   03430 Mismatch repair
    Phep_0866
   03440 Homologous recombination
    Phep_0866
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:phe03032]
    Phep_0866
   03400 DNA repair and recombination proteins [BR:phe03400]
    Phep_0866
Enzymes [BR:phe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Phep_0866
DNA replication proteins [BR:phe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Phep_0866
DNA repair and recombination proteins [BR:phe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Phep_0866
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 RNase_T tRNA_anti-codon FBF1 Intimin_C
Other DBs
NCBI-ProteinID: ACU03088
UniProt: C6Y295
Position
1019140..1023570
AA seq 1476 aa
MYLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDELGNMIEHQDYLVKPDGFNIPY
DAERIHGISTELATEQGIELAEVLEKFNIALSKAKFVVGQNIGFDVNIMGCELYRLGVES
PMAQMPVLDTCTEITAELLKLPGGRGGKFKLPNLTELHQYLFGEPFAEAHNATADVEATT
RCFLQLIKIDAFRPEQLQADQQYITRFKQNTPQVFERVGLNHINLKAASDEIRKRLQKDD
GGKISKRTLEENKEALKDAAFVHLHNHTQFSVLQSTINIPSLIKATAAHKMPAVAITDHA
NMMGAFHFVSQVLNHNKGVEARNAAAIEKGETAEEQTIKPIIGCEFFVCENHEDKKRKDD
GYQVVFLAKNKAGYHNLAKMSSIAYTRGFYYIPRIDKAIVEQYKEDILVLSGNLYGEISS
KLLNMGEKQAEEALLWWKSQFGDDFYIELMRHNQEDEDIVNATLVNLAKKHEVKLIATNN
TYYINKKDANAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSPEEMKSLFADLPE
AISNIQEVVDKIEAYKLAREVLLPKFDIPEEFLVKEDEEDGGKRGENKFLRHLTYVGAKK
RYGEITDDIAERLDFELQTIEKTGYPGYFLIVQDFIAEARNLDVSVGPGRGSAAGSAVAY
CLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIKKYGSNQVAQIIT
YGTMAAKSSVKDTARVLDLPLFEAEKIAKLIPNMKLAKIFTLDEKSLKEALRADEYEKIL
ELKALAGAKDLGAKTLEQAQILEGSLRNTGIHACGVIITPSDITNFVPVATAKDSDLYVT
QFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKSRHNIDLDPDNFPIDDERTYELFQRG
ETIGIFQYESTGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEIKYDL
DACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPKFIKQ
AAEKGHDAVILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNN
MSDIKQVAFFMEECKQMGVQVLGPDVNESDIKFSVNAQGEVRFGLSGIKGVGEKAVESII
EDRLEKGMYKDLYDFARRSNTRTVNKKAYESFVYSGAFDAFGYHRAQYFFVGINDKMNGI
EKVIKYANDFQNNESSSQSSLFGGSVADLILEPALPVAPEWSLIDKLKYEKDAIGIFLSG
HPLDNYKLELKEFCQHKVKCLSLVNKIRTGDTNEEVLAEFESIKNRELVVGGLVVVAAQR
MTKTGKPFGTLVFEDYDDSCELALFGDDFIKFKQFLTDGYFLQIRGRVAERFRKEGDWEF
KITSINLLSELRDKLAKSVTIQVPIERVNDDFMGQILAILENNKATTEQQNCQLLFDVYD
REQNVMVKLPSKSLKINPTNDFLSQIEALNVSSKLN
NT seq 4431 nt   +upstreamnt  +downstreamnt
atgtatttaatatttgacaccgaaaccacaggtttaccacgcaattggaatgcgccaatt
accgatactgacaattggccaaggtgtattcaaatcgcctggcaattgcatgatgagctg
ggaaatatgatagagcatcaggattacctggtgaagcccgatggttttaatataccctat
gacgccgagcgtattcatggaatctctacagagctggctacagagcaggggatagaactg
gctgaagttttagagaaatttaatattgctttatccaaagctaaatttgttgttggccaa
aatataggttttgatgtcaacattatgggctgtgagctttacaggctgggtgtagaaagc
ccgatggcgcaaatgcctgtgctggatacctgtaccgaaattacagccgagttattgaaa
cttccaggtgggcgtgggggtaaatttaaactgcctaacttaacagagcttcaccagtat
ctttttggtgagccttttgccgaggcccacaatgctacagccgatgttgaggctactacc
cgttgttttttacagctgatcaaaatagatgccttcagaccagagcagttgcaggccgat
cagcaatacataacccgttttaaacaaaataccccgcaggtatttgaacgtgttggcctg
aaccacatcaacctgaaagcggcctctgatgagatcaggaaacgcctgcaaaaagatgat
ggaggaaaaatctccaaacgtactttagaagaaaataaagaagcgctaaaagatgctgct
tttgtgcatttgcataaccatacccaattttcggtattgcagtctaccatcaacatccct
tccctcatcaaagctacggcagcccataaaatgccggccgtagccataacagatcatgcc
aacatgatgggggcattccattttgtaagccaggtgcttaaccacaataaaggggtagaa
gccagaaatgctgctgcaatagaaaaaggtgaaacggcagaggagcagaccattaaacca
attataggctgtgaattttttgtctgcgaaaaccatgaagacaaaaagagaaaagacgat
ggttaccaggtggttttcctggccaaaaataaagccggttatcataacctggctaaaatg
tcgtccattgcctataccaggggtttttattacatcccccggatagataaggccatagtt
gaacaatataaagaggatatcctggttttatctggtaacttatatggagagatctccagt
aagctcttaaacatgggtgaaaagcaggccgaagaagcactgctctggtggaaatcccag
tttggcgatgatttttatatcgagctgatgcggcacaaccaggaagatgaagatattgta
aatgccacacttgtaaaccttgcaaaaaaacatgaggtaaagctgatcgctaccaataat
acctattacatcaataaaaaagatgccaatgcgcatgatattttattgtgtgtaaaagaa
ggcgagaaacaggctaccccaatagggcgcggaaggggttaccgttttggtttacctaac
caggagtactatttcaaatctcctgaagaaatgaaaagcctgtttgctgatttgccggaa
gcgattagcaatatacaggaggtagtagacaagatcgaagcctataaactggcccgggag
gtacttttacctaaatttgatattcctgaggagtttttagttaaggaagatgaagaagac
ggaggcaaaagaggggaaaacaaattcttaaggcacctgacttatgttggggcaaaaaag
agatacggagaaattacagacgacattgcggagcggctggattttgagctgcagaccatt
gaaaagaccggttatcccggatattttctcattgtacaggattttattgccgaagcacgg
aacttggatgtatctgtaggccccggaaggggatcagctgcaggttctgctgtggcctac
tgtttgggtatcaccaatatagatccaattaaatacgatctcctttttgagcgtttcctt
aaccccgatcgtgtatccatgcccgatattgatatcgactttgacgatgaaggccgtgga
agggttatggattatgtaatcaaaaaatacggatctaaccaggttgcccagatcatcact
tatggaaccatggccgccaaatcttctgtaaaggatacggcccgtgtgctcgacctgcca
ctttttgaggcagagaagatcgccaagctgattccgaatatgaagctggctaagattttt
accctcgatgaaaagagtttaaaagaggcacttcgtgctgatgaatatgaaaagatcctg
gagcttaaagccctggcgggtgccaaagacctgggggcgaaaacactggaacaggcgcag
attttagagggctctttaagaaataccggtatccatgcctgtggggtaattattacacca
agcgacattaccaattttgttccggttgctaccgctaaggattcagatctgtatgttacc
cagttcgacaactcggtggtggaaagtgcaggtctgttaaagatggactttttggggtta
aaaaccttaaccctcattaaggataccgttaaactggttaaatccaggcataacatagac
ctggatcccgataattttccgattgacgatgagcggacatacgagcttttccagcgtggg
gaaaccattggtattttccagtacgaaagtacggggatgcaaaaatacatgaaagagctg
aagcctactgtatttggcgatttaattgccatgaacgccttgtacaggccgggccccctg
gagtatattccgagttttgtgcgcagaaaaaatggtgaagaggagattaaatatgatctg
gatgcctgtgaggaatatttaaaagaaacctacgggattacggtatatcaggagcaggtg
atgcttttgtcgcaaaagcttgctggctttaccaaaggcgaggccgatgtattgcgtaag
gcaatgggtaaaaagcaaaaggatgtactggacaagatgaagccgaaatttataaagcag
gcagcagagaagggccatgatgcggtgatattagagaaaatctggaaagactgggaagct
tttgcctcttacgcctttaacaaatcacactctacctgctatgcctggattgcttaccag
accgcctatttaaaggcccattatcctgccgagtatatggcggcagtactgtccaacaat
atgagcgacatcaagcaggttgcattctttatggaagaatgcaagcaaatgggtgttcag
gtactgggccctgatgtaaatgagtctgacattaaattctcggtaaatgcacagggcgag
gtacgctttggcctttcgggtattaaaggggtaggagaaaaagccgtagaaagtattata
gaagacagactggagaaaggcatgtataaagacctttacgattttgccagaaggtctaat
acccgaaccgtaaataaaaaagcctacgaaagttttgtgtatagcggggcttttgatgca
tttggatatcatcgtgcccagtatttctttgtgggcattaacgataagatgaatggcata
gaaaaagtaattaaatatgccaatgattttcagaacaatgaatcttcttcccaatcttcc
ctgtttggcggttctgtagccgatctgatcctggagccagctttacctgttgcgcctgaa
tggagtttaattgataagctgaagtacgaaaaagatgccatcggaatctttttgtccggg
catcccctggacaattataagcttgaattaaaagaattctgccagcataaagtaaaatgc
ctgtcactggtaaataaaatcaggacaggcgataccaacgaagaggtactggccgagttt
gaaagcataaaaaacagggagcttgtggttggaggcctggtggtagtggctgcacagcgc
atgacaaaaacaggaaagccttttggcacattggtgttcgaagattatgacgacagttgt
gaactggctttatttggcgatgattttatcaaatttaagcagtttttaaccgatggttat
tttttacagatccgtggaagggtagctgaacggtttagaaaagagggcgactgggagttt
aagattacttccattaatcttttgtcagaactaagggataaactggccaaaagtgtaacc
atccaagtacctattgaacgtgttaacgacgactttatggggcagatcctggccattctg
gaaaataataaagcaactaccgagcagcaaaactgtcaattgctgttcgatgtgtacgac
agggaacagaatgtgatggtcaaattgccttcaaaatcgttaaaaattaaccccaccaac
gattttctgagtcagatagaagccttaaatgtgagttctaagttgaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (76)   
   KEGG ORTHOLOGY (1)   
   RefGene (73)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (94)   

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