KEGG   Pedobacter heparinus: Phep_3235
Entry
Phep_3235         CDS       T00978                                 
Name
(GenBank) DNA polymerase III, beta subunit
  KO
K02338  DNA polymerase III subunit beta [EC:2.7.7.7]
Organism
phe  Pedobacter heparinus
Pathway
phe03030  DNA replication
phe03430  Mismatch repair
phe03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:phe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Phep_3235
   03430 Mismatch repair
    Phep_3235
   03440 Homologous recombination
    Phep_3235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:phe03032]
    Phep_3235
   03400 DNA repair and recombination proteins [BR:phe03400]
    Phep_3235
Enzymes [BR:phe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Phep_3235
DNA replication proteins [BR:phe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Phep_3235
DNA repair and recombination proteins [BR:phe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Phep_3235
SSDB
Motif
Pfam: DNA_pol3_beta DNA_pol3_beta_2 DNA_pol3_beta_3
Other DBs
NCBI-ProteinID: ACU05430
UniProt: C6Y3Y7
Position
complement(3841018..3842142)
AA seq 374 aa
MRFIVSTSTLLKHLQTVNGASSSSTVLPILENFLFEIKDGNLTISATDLQTSMTTSLPVE
SKEGGKVAVPARILLDTLKTLPDQPISFNIDDSTFSIEISAGDGKYKLSGENGDDFPKIP
VVENASSVNLPASVLTEAITKTIFAVSSDELRPAMTGVFCQLSDQHITFVATDAHKLVRY
RRMDSKADKSSSFILPKKALTLLKAALPSTDINVSVDYNATSAFFKFENINLVCRLIDER
YPDYEAVIPANNPNKLVIDRALFLNTLRRVVIFANKTTHQVRLKINGSELNISSEDLDFA
NEAHERLSCQYEGEDLEIGFNAKFLIEMLSNLSGEEVTLELSTPNRAGLLIPQTNDENED
VLMLVMPVMLNNYN
NT seq 1125 nt   +upstreamnt  +downstreamnt
atgagatttattgtatccacatcaacgcttttaaaacatttgcaaacagttaatggtgca
tcaagcagcagtactgttttgcctatactggaaaatttcctgtttgagattaaagatgga
aatttaacgatatctgctaccgatctgcaaaccagcatgaccacttctttgcctgtagaa
tccaaagaaggaggtaaagttgcggttcctgcaagaatattacttgacaccttaaaaaca
ctgcccgatcagccaatttctttcaatattgacgatagtactttctctatcgagatcagc
gcgggcgacggtaaatacaaattgagcggagagaacggggatgattttcctaaaatcccg
gttgttgaaaatgcttcatctgtaaacctgccagcttctgttttaactgaggccattacc
aaaacaatttttgctgtcagcagcgatgaacttcggccggctatgacgggtgttttttgt
cagctttctgatcagcacatcacttttgtagctacagacgcacacaagttggtaagatac
aggcgtatggacagtaaagcagataaaagttcttcttttattttgcctaaaaaagcccta
accctgctaaaggcggctttgccttctactgacatcaacgtatctgtagattacaatgca
accagcgctttctttaaatttgagaacattaatctggtttgccgtttgattgacgagcgc
tatcctgattatgaggcggttattcctgccaacaatccaaataaactggttatagacagg
gctttgttcctgaataccctacgcagggtggttatttttgcaaacaaaaccacgcatcag
gtgaggttaaagatcaatggcagcgaattaaatatctcttctgaagaccttgattttgcc
aatgaagcacatgagcgtttgagttgccagtatgagggtgaagatctggaaattggcttt
aatgctaagtttttaatagagatgctgagcaatttaagcggcgaagaggtgacattagag
ctatctacaccaaaccgggccggcttgctgatccctcagaccaatgatgagaacgaggac
gtcctgatgctggtgatgccggttatgttaaacaattacaattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (48)   

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