KEGG   Pseudopodoces humilis (Tibetan ground-tit): 102100198
Entry
102100198         CDS       T02921                                 
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
  KO
K20099  ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6]
Organism
phi  Pseudopodoces humilis (Tibetan ground-tit)
Brite
KEGG Orthology (KO) [BR:phi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:phi03041]
    102100198
Enzymes [BR:phi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102100198
Spliceosome [BR:phi03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    102100198
SSDB
Motif
Pfam: YTH HA2_C OB_NTP_bind Helicase_C R3H DEAD AAA_19 HA2_N nSTAND3 AAA_22 Ank_2 ATPase PhoH AAA_23 ResIII Ank_4 UvrD-helicase AAA_7 AAA_29 T2SSE Sigma54_activat AAA_11
Other DBs
NCBI-GeneID: 102100198
NCBI-ProteinID: XP_005530058
Position
Unknown
AA seq 1367 aa
MEFPSSFTSTERAFVHRLCQSLGLVSKSKGKGANRYLTVRKKDVSETHAVMTCDLALCTK
HAVRSLIQSFPVTNKERTELLPRTERGNACAVESENKEVNKTSGRLNDGIPQVPVKRGES
EFDSFRQSLPVLEKQEEIVQIIKENKIVLIIGETGSGKTTQIPQFILDDCYKSGTPCRVF
CAQPRRLAAVAVAERVAAERREKIGQTIGYQIRLESRVSPKTLVTFCTNDMLLRTLMAGD
STLSTVTHVIVDEVHERDRFSDFLLIKLRDVLKKQNDLKLIISSAALDANLFIRYFGSCP
VIHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEETQKNTLAEWCSAQENTNKL
ASRRQKSVPRANQEYKWLDDGGDTVFNQLTEKDVNCLEPWIVKEMDSCLSDIWLHKDTDS
FAQVFHLILTENVSVDYRHSETGATALMISSGRGLLSQVEQLISMGASIHCKSSNGWMAV
DWARRFGQTEVVDMLESYSASFGFGTLDESSLVQKSGSDLSAEDRELLTAYHHSFDDEKV
DLDLIMHLLHSICHSSDAGAILIFLPGYDEIVNLRDRILFDDKRFADNARRYQVFMLHSS
VQTLDQKKVLETPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSLDALSRVTMLK
MGWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQSPELLRMPLQEICLYTKLLA
PINCPVVDFLMKAPDPPPAGTVRNAVHMLKTIDAMDAWEDLTELGYHLTELPVEPHLGKM
VLYAVVLKCLDPVLTIASALACQDPFVLPTLASQKRAAMLCRKRFAAGTFSDHMALLRAF
QAWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDVNTN
SENWAVIKAALVAGMYPNLVHVDRESLVLTEPKEKKVRFHPTSVLGQTQYKKIAPANGQA
AAIQALPTDWLIYDEMTRAHKTANIRCCSVVTPVTVSLFCGPARLPSNALQASSTFRGGG
VSNDSSDSEMEDKTTAHLALLKLDEWLHLKLDPEAAGMLLQLRQKWHSLFLRRMRAPSKP
WSQVDETTVRAITAVLSAEEQSAGLQQPSGIGQRPRPVACEELPLASTWKSTSSRKSSTE
TELSDSSNAEKVSVKSTSPALHQPKKYKERDILLSKRSSDDRLAQSSVKPAESSSFPSPC
ASPSPVSGKGCKSPSPRQNRPVRYFIMKSSNLRNIDISQQKGIWSTTPSNERKLNGAFWE
SNVVYLIFSVQGSGCFQGFARMGSAIGSERSQDWGSAGFGGVFKVDWIRKESIPFQFAHH
LLNPWNDSKKVQISRDGQELEPQVGEQLLQLWDHIPLAGRKLTEHAK
NT seq 4104 nt   +upstreamnt  +downstreamnt
atggaatttccttctagtttcactagtactgaaagagcatttgttcaccggctctgccag
tctcttggactggtatctaaaagcaaaggaaaaggagccaatcgatacctgactgtaagg
aagaaggatgtgtcagagacacatgcagtcatgacttgtgacttggctctctgtacaaaa
cacgccgttcggagtctaattcagagttttcctgtcacaaacaaggaacgcacagaactc
ctgccaaggacagagcgaggaaatgcctgtgctgttgaatctgaaaacaaagaggtgaac
aagacaagtggtcgacttaatgatggtattccccaggtccctgtgaaaagaggggaatca
gagtttgattccttcaggcaatcactaccagttcttgaaaaacaggaagaaattgtccaa
ataataaaggaaaataaaattgttttgattataggagagactggatcaggaaaaactact
caaatccctcagtttattctggatgattgctacaagagtggaactccctgccgtgtgttc
tgtgctcagccaagacgcttagcagctgttgctgtggctgaaagagtggcagcagaaaga
cgagagaagattggccagactattggttaccagatcagattagaaagcagggtttctcca
aagacactggtaacattctgcactaatgacatgcttcttcgcacgctgatggcaggagac
agcaccctctccaccgtgacacatgttattgtggatgaagtacatgagagagatagattc
agtgacttcttgctaataaaactgagagatgtgctgaagaagcagaatgatttaaaatta
attatttctagtgctgctctagatgcaaatctctttattaggtattttggaagctgccca
gtaatacatatccaaggaagaccttttgaagttaaagagatgtttctggaggacatttta
cgaagcactggttatacaaacaaagagatggtaaagtacaaaaaagagaagcagcaagaa
gagacacagaagaacactcttgctgagtggtgttcagctcaagaaaacactaacaaactg
gcatctcggagacaaaagtcggttccaagggcaaatcaggagtacaaatggttggatgat
ggtggtgacacagtatttaatcaactaaccgaaaaagatgtgaattgccttgaaccgtgg
atagtaaaagaaatggattcctgtctttctgacatctggttgcataaagatactgattcc
tttgctcaggtgttccatcttattttaactgaaaatgtcagtgttgattataggcacagt
gaaaccggtgcaactgctctgatgatttcttctgggagaggccttttgagtcaagtagaa
cagctgatcagtatgggagcaagtatccactgcaaatcatccaatggctggatggctgtg
gactgggctaggcgatttggacagacagaggttgttgatatgttggaatcctacagtgct
tcatttggatttggaactctggatgaaagttccctggtccaaaaaagtggtagtgacctt
agtgcagaggacagagaactactgacagcttatcatcacagttttgatgatgaaaaagtg
gatctggatctgataatgcacttacttcacagcatctgtcatagtagtgatgcaggtgca
attttaatatttcttcctggatatgatgagatagtgaacctgagggaccgtattcttttt
gatgacaagagatttgctgataatgctcgcagataccaagttttcatgcttcattcaagt
gtgcagactttagatcagaagaaagtgcttgaaactccaccttctggcatccgcaaaatt
attctttccactaatattgcagaaaccagcataacagtcaatgatgttgtgtttgtcatt
gactcaggcaaggtgaaagagaagtctttagatgcactgagtcgtgttacaatgctaaaa
atggggtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgtcag
cctggagtctgttttcgtctcttcagcaggctccgatttcagaatatgttggaatttcaa
tctccagaacttctaagaatgccgcttcaggagatctgtttgtacacaaaacttctggct
ccaattaattgtccagttgtagactttcttatgaaagctcctgatcctccacctgctgga
actgtgagaaatgctgtgcatatgcttaagaccatagatgccatggacgcttgggaagat
ctcactgagcttggttatcacctcactgaattacctgtagagccacaccttggtaaaatg
gtgttgtatgctgtagtgctgaagtgcctggatcctgttctgaccattgcctctgctctt
gcctgccaagacccttttgtgctgcccacactggcctcccaaaagcgtgcagccatgctg
tgcaggaagcgttttgctgcagggacgttcagtgaccacatggccctgctcagggctttc
caggcatggcagaaggcacgcagtgatggctgggagagagccttctgtgaaaagaacttc
ctatcccaagccacaatggaaatcattgtaggaatgagaacacagttgcttggccagctt
agagcctcaggttttgtgagagccagaggaggagctgatattagagatgtcaatactaac
tctgagaactgggctgtaattaaagctgctttagtggctgggatgtatcccaatcttgtg
catgtagacagagaaagcctggtgttgactgaaccaaaggagaagaaagtgcgatttcat
cctacctctgttcttggtcaaactcagtataaaaagattgccccagcaaatggacaggct
gcagccatccaggctctccctacagactggcttatatatgatgaaatgacaagagctcac
aagacagcaaacatcaggtgctgctctgttgtgacacctgtcaccgtgtccctcttctgt
ggaccagccagactgccaagtaatgccttgcaggcatcttcaacctttcgagggggagga
gtatctaatgatagcagtgacagtgagatggaggacaaaacaactgctcatctggcacta
ctgaagctggatgaatggctccatctcaaactggaccctgaagccgctggtatgctgttg
caacttaggcagaagtggcacagtttgttcctgcgtcgtatgcgagctccttctaaaccg
tggtctcaggttgatgaaacaactgtaagagcaattacagctgttctgagtgctgaagaa
cagtctgcaggtctgcagcagccttcaggaattggccagagaccaagacctgtggcttgt
gaagaacttcctttggcatctacatggaagtcaaccagcagtagaaaaagctcaacagaa
actgaattgtctgactcctctaatgctgaaaaggtttcagtgaaatctacatctcccgca
ctccaccagccaaagaagtacaaagaaagagacattttgctctccaaacgatcctcagat
gacagattagctcagtcctcagtgaaacctgcagaaagcagtagctttcccagcccctgt
gctagtccttctccagtatctggaaagggttgcaaatctccttcaccaagacaaaatagg
ccagttcggtactttataatgaaaagtagcaacctgcgaaacattgatatttctcagcag
aagggaatatggtccactacaccaagtaacgaaaggaagctgaatggagccttttgggag
agtaatgtggtttacttaatattttctgttcaagggtctggatgctttcagggttttgct
agaatgggttcagcaatcggaagtgagagaagtcaggactggggatctgctggttttgga
ggtgtatttaaggtggactggatccgaaaagaaagcattccttttcagtttgcacaccat
ttgctcaacccatggaatgacagtaagaaagtacaaataagtagagatggccaggagctg
gaaccacaagttggagagcagttgctgcagctttgggatcatattcctttggcaggaaga
aaactgactgagcatgccaagtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (22)   
   Pfam (22)   
All databases (63)   

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