KEGG   Pseudopodoces humilis (Tibetan ground-tit): 106628384
Entry
106628384         CDS       T02921                                 
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
phi  Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:phi00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106628384 (COL27A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:phi00536]
    106628384 (COL27A1)
Glycosaminoglycan binding proteins [BR:phi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106628384 (COL27A1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2
Other DBs
NCBI-GeneID: 106628384
NCBI-ProteinID: XP_014111697
Position
Unknown
AA seq 1585 aa
MRAVPNGMRSDEVNLLDKITLHAQDLSNVSFGYDHSKCRILEIGQYATLNIPTRAAFGDR
FADELSVLLKLRYSLKEDTSLVTILSHRSHVVFQIRINPYALVFVTTRRRHYEFPVSFLG
DGHWHRVALSISLERLELHVDCRLVDRVSWSNYFGMGVNTEGLIIIGGLIESFEIPFKDS
RLTSSDLAPGPPWPWEDAQGTLNLQPDGSALPSLSAQDMPSAEGEEEGSLSIEDEGFELL
NSTYNKITGPGRPVLRRSSGASIKPPRAAKKEHGSEPQEENVTTEKLSGDTGTRRRLPAG
KPRLEPFTKGYPGAMGRTGPPGDPGPAGIPGVPTIVLWRNSREDWQSFTQSSFYQLLHAG
WPGPCGAPGEPGEKGQRGYTGEPGLQGLPGRVGYPGSDGFPGLDGKPGPWGLPGEQGLQG
FQGDRGLAGDKGEEGFLGDPGPAGDKGEKGVKGVKGENGLPGAAGLQGMVGLKGVMGFQG
PAGPEGEPGQPGSVGCRGINGSQGELGPPGMPGPRGPKGPQGLQGRRGPPGPRGSQGPAG
LEGSAGPKGDTGTDGAPGLRGQLGLEGPGGFLGLPGAKGTQGERGCRGPAGAKGDLGSKG
GKGPRGAQGAKGAPGSRGQGGLQGFPGPRGAAGPRGPDGEEGQIGPAGLNSSEGPKGCQG
PDGPKGAPGPRGARGRVGQRGLVGVPGLPGLRGVPGAEGAEGKPGTQGHPGIVGSPGRRG
PLGFAGLPGGRGHAGTPGSIGSPGKPGPDGDLGSLGPKGLPGKPGLEGPQGPVGIHGYPG
PAGDRGRLGRRGDKGERGAQGPPGFPGKAGPKALPGPPGPRGAPGSQGRTGEPGPRGLPG
LPGVPGTRGLDGIPGKPGLGGERGAPGAAGAAGPAGYPGREGPHGREGPAGMRGEKGEVG
DAGAAGVCGLDGEQGPPGPPGAEGQLGPKGEQGEPGTRGAPGIRGSPGEPGDEGTEGPPG
RPGMQGKEGDTGDTGDPGEPGLQGRKQGNPGPRGLPGIPGPGAATGEIGGKGQKGEKGRE
GLLGQGGVTGAAGPAGARGWSGGTGLRGPPGLDGPEGEKGDPGPRGVDGPAGAAGFEGLA
GDDGTKGDGGKPGPVGSQGAQGLAGAPGLRGYSGHEGARGVVGTKGQPGRQGTLGPPGEA
GATGLSGTEGLVGAKGEPGEPGKAGQMGSPGQAGPKGCKGHKGDKGDTGQEGDQGVPGEA
GRRGKRGKMGQQPPRGPRGHKGYPGDKGLPGPQGPQGPYGIPGLKGIKGDPGPKGHKGEK
GSKGDLGQRGDDGFKGKPGPHGVPGRLGPKGKQGDTGPPGPRGHPGIPGTPGLSGPKGLR
GFPGLPGPRGTPGMPGLAGPPGPSGPPLMLSQEELQHLIYSSNHLNYTVVWALLDSLSRE
LQALMEHPNGTKSNPATTCKELLLAHPELPDGQYYIDPNQGSPQDALLAFCNFTAGGETC
IAPIHNQVPIKAWLSTYSSENTFEWFSTLPGGFLLEYGASAVQLRFLRLHSLRATQKVSY
SCRPAPELGQPQPDKEIRFLADSRDHSYAASLQGCLPDNDSSITDTIFQFSTEELWLLPL
RDLAVFHNGDASHQFGFTVGPVCFS
NT seq 4758 nt   +upstreamnt  +downstreamnt
atgcgggcggtccccaatgggatgcgctcagatgaggtgaacctgctggacaaaatcact
cttcatgcccaggacctcagcaatgtttcctttggctatgaccacagcaagtgcaggatc
ctggagatcgggcaatacgcgaccctcaacatccccaccagggcggcttttggggacagg
tttgcagatgagctgagcgtgctgctgaagctcaggtactccctgaaggaggacaccagc
ctggtgaccatcctcagccaccgcagccacgtggtcttccagatcaggattaacccctac
gccctggtcttcgtcaccacgaggaggagacactacgagttcccagtgtccttcctgggc
gatgggcactggcaccgagtggctctcagcatctccctggagaggctggaattgcacgtg
gactgcaggctggtggacagagtgagctggtccaactattttgggatgggggtgaacact
gaaggtctgatcatcatcggaggcctcattgagtccttcgagatcccctttaaggactcc
agactcaccagttcggatttggcgccggggccaccttggccatgggaggatgcccagggg
accctcaacctccagcctgatgggagtgccctgccttccctctctgctcaggacatgcca
tcagctgagggggaggaggagggcagcctttccattgaggatgaaggctttgagctgctg
aactccacctacaataaaatcaccggccccggcaggccggtgctcaggagaagctcagga
gcctccatcaagcctccccgagcagccaagaaggagcatggctcggagccccaggaggag
aacgtcaccacggagaagctgtcaggggacacgggcacacggcggcggctcccggccggc
aaacctcgcctggagcccttcaccaagggataccctggggccatggggcggacgggcccc
ccaggtgaccctggccctgccggcatccctggtgtccccaccatcgtcctctggaggaac
tccagggaggactggcagtcgttcacgcaatcatcattttaccaactcctgcacgcgggc
tggccgggaccctgcggagcgccgggagagccgggggagaaaggccagcgggggtacacg
ggggaacccgggctccagggcttgccagggcgtgtgggataccccggctccgatggtttc
cctggcttggatggcaaacctgggccatgggggctgccaggggagcagggcctccagggc
ttccagggtgaccgagggctggctggggacaagggagaggagggtttcttgggagaccct
ggaccagctggggacaaaggagagaagggagtgaagggggtgaagggagagaatgggctg
ccaggtgctgctggcctccaggggatggtggggctgaagggcgtcatgggcttccagggc
cctgcaggaccagagggagagcccggccagccgggatccgtgggatgccgaggcatcaat
ggctctcagggggagttgggtcctcctgggatgcccggcccccgtggccccaagggaccc
cagggcctgcagggcagacgtggcccccccggccccaggggctctcagggtccagcaggg
ctggagggatccgctggtcccaaaggagacacaggtacagatggtgcccccgggctgagg
ggacagctgggactggagggccctgggggttttttgggcctgccaggtgcaaaaggcacc
caaggagagcggggctgccgaggtccggctggagccaagggagatttgggatccaaagga
ggcaagggcccacgaggagcacaaggagcaaaaggcgctccaggaagccggggccagggg
ggcttgcagggcttccccggcccccgaggggcggcagggccacggggaccagatggggaa
gaaggccagattggcccagcagggctgaacagcagcgagggacccaagggatgccaagga
cctgatggccccaagggagccccaggaccacggggagcccggggccgtgtggggcagcgt
gggctggttggagtccctggactgcccggcttgcggggcgtgccgggagcggagggtgct
gaaggaaagcctggtacacagggccacccagggattgtgggcagcccaggcaggagggga
ccactgggatttgctggtttgccagggggccgtgggcacgctggaactcctggatccata
ggctcgccaggaaagcctggacctgatggagacctgggttccttgggcccaaaggggctg
cctgggaagccgggcttggaggggccacaaggacctgtgggcatccatggctatccagga
cctgctggagaccgcgggaggttgggacgcaggggagacaagggagaaaggggagctcaa
ggtccaccaggatttccaggaaaagctggtccaaaggccctgccaggtccccctggtccc
cgtggtgctcccggctcccagggcagaacgggtgagccaggtcctcgagggctcccaggg
ctgcctggcgttcctggcacaagagggctggatggcattcccgggaagcctggcttgggt
ggagagagaggcgctcctggagcagctggtgctgctggcccagctgggtacccgggccgg
gaaggtccacatggacgtgaaggacctgcagggatgagaggagagaagggtgaggtggga
gatgccggggcagccggagtctgtgggctggatggggagcagggaccaccaggaccgccg
ggagcagagggtcagctggggccgaagggtgagcagggagaaccagggacccgtggagct
ccaggcatcagagggagccctggggagccaggggacgaggggacagaggggccaccggga
cggcctgggatgcaagggaaggagggtgacactggtgacactggagacccaggcgagcca
ggactgcagggacggaagcagggcaatcctggccccaggggccttcctggaattcccggt
ccaggagctgccacgggggaaattggagggaaaggccagaagggagagaagggccgagaa
ggtttgctgggccagggcggtgtcaccggagctgcaggacctgctggagccagaggatgg
tctggggggacaggactccgaggtcctcctgggctcgacggtcccgagggagagaaggga
gatccagggccacgaggtgtggatggacctgctggggctgcaggattcgagggactggct
ggagatgatggaacgaagggagatggtggcaagcccggcccagtgggctcgcagggggct
cagggactggcaggtgcccctgggctccggggctacagcggccacgagggagccagagga
gtggtgggcaccaagggacagccaggccggcaggggactcttgggccaccgggagaagct
ggagccaccgggctgagcggcaccgagggcctggtgggtgcaaaaggggagccaggagag
ccgggaaaagcgggacaaatgggctctcctggacaagctggtcctaaaggatgtaaaggc
cacaaaggagataagggcgacacggggcaggaaggggaccaaggggtcccaggagaagct
ggcagacggggcaagcgaggcaagatgggccagcagcccccgcggggtccccggggacac
aagggctacccaggtgacaaaggacttccaggaccccaaggcccccagggaccctatggc
atcccagggctgaagggcatcaaaggagaccctggaccgaaaggacacaagggtgagaag
ggcagcaagggtgacctgggccagcgaggggatgatggcttcaagggcaagccaggaccc
cacggtgtccctgggaggctgggacccaagggaaagcagggtgacactggcccccctggc
ccacggggacaccctggaattcccgggacaccgggcttgtctggacccaaagggctgaga
ggcttcccaggcctgccaggccccaggggcacgccgggaatgccgggtctggctggcccc
cctggtcccagtgggcctccactgatgctgtcgcaggaggagctgcagcacctcatttat
tcctccaaccacctgaattacaccgtggtctgggctctgctggactccctgagccgggag
ctccaagccctcatggagcatcccaatggcaccaaatccaacccggccaccacctgcaag
gagctgctgctggctcaccccgagctgcctgacgggcaatactacatcgaccccaaccag
ggcagcccccaggacgcgctgctggccttctgcaacttcacagctgggggggagacctgc
atagcccccatccacaaccaggtccccatcaaggcttggctgagcacctacagctctgag
aacacctttgaatggttcagcacccttcccgggggcttcctgctggaatacggggccagc
gcagtgcagctccgcttcctgcgcctgcacagcctccgcgccacccagaaggtctcgtac
tcctgcagaccggccccggagctcggccagccccagcccgacaaggaaatccgcttcctg
gcagactcccgggatcacagctatgcagccagcctgcagggctgcctgccggacaacgac
tcctccatcaccgacaccatcttccagttcagcacggaggagctgtggctgctgcccctg
cgggacctggctgtcttccacaacggcgacgcctcgcaccagtttggtttcacagtcgga
ccagtttgcttcagctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (72)   
   KEGG ORTHOLOGY (1)   
   RefGene (68)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (81)   

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