KEGG   Pelagibacterium halotolerans: KKY_1647
Entry
KKY_1647          CDS       T01645                                 
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
phl  Pelagibacterium halotolerans
Pathway
phl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:phl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    KKY_1647
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:phl03021]
    KKY_1647
   03400 DNA repair and recombination proteins [BR:phl03400]
    KKY_1647
Enzymes [BR:phl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     KKY_1647
Transcription machinery [BR:phl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     KKY_1647
DNA repair and recombination proteins [BR:phl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      KKY_1647
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L RNA_pol_L_2 Phage_tube_2
Other DBs
NCBI-ProteinID: AEQ51663
UniProt: G4RC15
Position
complement(1647293..1648309)
AA seq 338 aa
MIQKNWQELIKPTKLDVVPGSDSARIASVVAEPLERGYGLTLGNTLRRVLLSSLQGAAIT
AIQIDGVLHEFSSIPGVREDVTDLVLNIKEIAIKMEDEGPKRLTLSKQGPGAVTAGDIKT
TGDIEVLNPDLVICHLDDGAEINIEFTVHTGKGYVPADRNKPEDAPIGYIAVDALFSPVK
RVSYKVEKTREGQNLDFDKLSMQIETNGAISPEDALAFAARIVQDQLSVFVNFEEPTKEK
AEDSTPELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKS
LNEIKEVLAQMGLHLGMDVNNWPPENIEDLAKRYEDHY
NT seq 1017 nt   +upstreamnt  +downstreamnt
atgatccagaaaaactggcaggaactgattaagccgaccaagctcgacgtcgttccgggc
agcgattccgcgcgcatcgcctccgtggtcgccgagccgcttgaacgcggttatggcttg
accctgggcaacacgctgcgccgggttctgctctcgtcgctgcagggcgcggcaatcacc
gccatccagatcgatggcgtattgcatgaattctcgtcgattcccggcgtgcgtgaggac
gtgaccgatctcgttctcaacatcaaggaaatcgccatcaagatggaagacgaagggccc
aagcgcctgacgctttccaagcagggtccgggtgccgtcaccgctggcgacatcaagacc
accggtgatatcgaagtgctcaaccccgatctcgttatctgtcacctcgatgacggcgcc
gagatcaacatcgagtttacggttcataccggcaagggctatgtcccggccgaccgcaac
aagcccgaagacgctccgatcggctatatcgccgtcgatgcgctgttctcgccggtcaag
cgcgtcagctacaaggtcgaaaagacccgtgagggccagaacctcgacttcgacaagctg
agcatgcagatcgaaaccaacggcgccatcagccccgaggacgcgctggcctttgcggcc
cgcatcgtccaggatcagctctcggtgttcgtcaatttcgaagagcccaccaaggaaaag
gccgaggattcgacacccgaactcgccttcaacccggcgcttctcaagaaggtggacgaa
ctcgagttgtcggtgcgttcggcaaattgcctcaagaacgacaacatcgtttatatcggc
gatctcatccagaagacggaagcggaaatgctgcgcacgccgaacttcgggcgcaagtcg
ctcaacgagatcaaggaagtgctggcccagatggggctccatctcgggatggacgtcaac
aactggccgcccgaaaacatcgaagacctcgccaagcgttacgaagatcactactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (29)   

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