KEGG P.horikoshii: PH1546

Pyrococcus horikoshii: PH1546

Entry

PH1546 CDS P.horikoshii

Definition DNA-directed RNA polymerase subunit B (EC:2.7.7.6)

Orthology K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6]
K03045 DNA-directed RNA polymerase subunit B" [EC:2.7.7.6]

Pathway pho00230 Purine metabolism
pho00240 Pyrimidine metabolism
pho01100 Metabolic pathways
pho03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:pho00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:pho00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:pho03020]

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7
RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 Auto_anti-p27 IBR
zf-FPG_IleRS TF_Zn_Ribbon Transposase_35
PROSITE: RNA_POL_BETA

Other DBs NCBI-GI: 14591329
NCBI-GeneID: 1443865
NITE: PH1546
UniProt: O59226

Position complement(1375961..1379314)

AA seq 1117 aa
MRGPTVVEVTPDDLWIVMESYWEEKGLVRQHLDSYNAFIERGLQEVVDEFGGIKPDIPDF
EVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQDPVEVRI
GELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK
DERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPRPVKFVYVMRALGLERDKDI
VDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLL
PHMGVTPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF
SQLIKDIQYQMTKTYQRRGEKYVFSNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV
SQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL
ALMAQITTAVPEEEVREYLMSLGIVPIEVRRPSPELWRVYLNGVLIGTVEDGKALVERIK
KDRRSGKISDIINVAYYEDVKEVYVNSDDGRVRRPLIIVENGVPKLTKEHVQAIKEGRLK
WSDLVRMGVIEYLDAEEEENAYVAMWPWEVTKEHTHLELMPAAILGLPASLIPYPEHNAA
PRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFV
VAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDRFEIPAPTVRGY
RGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPS
EKGIVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTES
GIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGF
KHTGREIMYDGITGKRFEADIFIGIIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAR
EGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAIEDKRRHKVYCPVC
GEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV

NT seq 3354 nt +upstreamnt +downstreamnt
atgagaggtccaactgttgtagaggttactcccgacgacctttggattgttatggagagc
tactgggaagaaaagggacttgtaaggcagcatcttgattcttacaatgctttcatcgag
aggggtctccaggaagttgtcgacgaatttggaggaataaaaccagatattcccgatttt
gaagttaagtttggaaaaattagagtaggagagcccgagtttcaagagcctcatggtcag
agaaaaccactttatccaatggatgcaaggattaggaacttaacttactcggccccacta
tacctggaaatgatccccgtgataagggggattgaacaggatcccgttgaggttagaata
ggtgaacttccaataatgcttaagtctaaggcttgtaggctctatggccttagtgatgag
gaactaataaagcttggggaagatcctaaggatcctggtggttacttcataataaatggt
tccgaaagagtgatagtttctatagaggatatagcccccaatagaacgctagttgagaaa
gatgagaggcaagaaaagtatatagcaaaagttttctcgtataggcatggttacagggcc
ctcgtaaccgttgaaagaaagaaagatggaatcctttatgtagggattccaaacgttcct
agacctgtgaagtttgtctatgttatgagagctctaggacttgaaagggataaggatata
gtcgatgcagttggaaacgatcccgaggttcaacagatattattcgataacctagaggat
gctagtgatataacaacacaacaggaagcgctagaatatattggaaagcttgttgctcct
ggtcaagctagagaatacaggctaaagagggctgagtacgttatagataataacctcctt
cctcacatgggagttactcccgaggacaggataagaaaggcttactatcttggaatgatg
gcactgaaagtaatagagctatccctcggaaagagagatgaggatgataaggatcactat
gcgaacaagaggttaaggctggcaggagatcttctaaaagatctctttagagttgcattc
agtcagttaattaaggatatacagtatcagatgactaagacatatcaaagaaggggagag
aaatatgtgtttagtaacatccacagattcataaggaactcgattagacctgatgttctc
accgagaggattgagcacgccttagcaactggagcttggccaggaggaaggacgggtgta
agccagcttttagacagaacaaactacgtttcaacattgtctcaccttaggagggttaca
tctccccttgacagagaacaaccccacttcgaggctagagatctacacgggactcattgg
ggtagaatatgtcctactgagacacctgaaggtccaaattgtggattggttaagaattta
gccttgatggcccagataacaacagcagtcccagaagaggaagttagggagtacctgatg
tccctgggaatagttccaatagaagtgagaagaccgagtcctgagctttggagagtctat
ttgaatggagttctaattggtaccgttgaggatggtaaagcccttgttgaaaggataaag
aaagacagaagaagtggaaagataagtgacataataaacgtagcctactatgaggatgtt
aaagaggtttacgttaacagcgatgatggtagagttaggaggcctctgattattgttgaa
aatggtgttcctaagctaactaaggagcacgtgcaagccattaaggaaggaaggcttaag
tggagtgatctagtcagaatgggcgtcatcgagtacctagatgctgaagaagaggaaaat
gcctacgttgccatgtggccatgggaagttaccaaggagcacacccacttggagctaatg
ccggccgctattctaggattacctgcgtctttgattccatacccagagcacaatgctgct
ccgaggaatacctatggtgcaggtatggccaagcagagccttggtttagggtgggctaac
tttagaataagggtagataccagaggtcacctacttcactatccgcaaattccacttgtt
aactcgaggataatgaaagctgtcggttatgaagacaggcctgctggtcagaacttcgta
gtcgcagttttagcttaccacggttataacatggaagatgcaattataataaataaagcc
tccatagagagaggactggcaaggtctacattcttcagaacatacgaggccgaggaaaag
aagtatcttggtggtcagacagatagatttgaaattcccgctcctaccgtaaggggatat
aggggagagaagtactatagacacctggatgaggatggcctaatattccccgagtcaaag
gttgagggtaaggatgtcctgataggaaggacatccccgccgaggttccttgaagagaga
gggttaggggccgtgagcctacaagaaaggagagaaacgagcgttgctgtaagacctagt
gaaaagggaatcgttgacaaggtaataattaccgagacgggggatggaactaagctcgtc
aaggtcaccgttagagaccttagaataccggagatcggtgataaattcgcttcaagacac
ggtcagaaaggtgtcataggattaatcgttccccaggaagatatgccctggactgagagt
ggaatagttcctgacctaatagtcaatcctcacggtattccatcgagaatgacagttggt
cagttgcttgaagccatagggggcaaggttgcagccctgaagggaaggagagttgatggt
actgcattcattggagagcccgaagaaaagctaaggaaggagctcgaggagcttggcttt
aagcacactggaagggagataatgtacgatggtataacaggtaagaggtttgaggccgac
atattcattggaataatctactaccagagattgcaccacatggttgccgataagatacac
gcccgttcaagaggtccagttcaggttctcactaagcaaccaacagagggtagggctaga
gaaggaggtctgaggtttggtgaaatggagagagatgtcctcgttggtcatggagctgcg
atgctactcattgagagattgcttgaagaaagcgataaaactgaggtatgggtctgtgaa
aactgtggtcacatagctatagaggataagaggagacataaggtctattgcccagtttgt
ggagaggaggaaaggattagcaaagttgaaatgagttatgcatttaagcttctcctggat
gagcttaaggctatggtgattagacctaagttaaacctcacggagagggtgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (2)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   NITE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (13)   
   Pfam (12)   
   PROSITE (1)   
All databases (29)

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