KEGG   Phaeobacter porticola: PhaeoP97_03549
Entry
PhaeoP97_03549    CDS       T04595                                 
Name
(GenBank) putative ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
php  Phaeobacter porticola
Pathway
php03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:php00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PhaeoP97_03549
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:php03019]
    PhaeoP97_03549
   03016 Transfer RNA biogenesis [BR:php03016]
    PhaeoP97_03549
Enzymes [BR:php01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     PhaeoP97_03549
Messenger RNA biogenesis [BR:php03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PhaeoP97_03549
Transfer RNA biogenesis [BR:php03016]
 Prokaryotic type
  tRNA degradation factors
   PhaeoP97_03549
SSDB
Motif
Pfam: RNB CSD2 S1 MarR_2 RNase_II_C_S1
Other DBs
NCBI-ProteinID: APG48901
UniProt: A0A1L3IA39
Position
3643265..3645535
AA seq 756 aa
MTRIPSKAEILEWIAAHPTHNSKRDIAKAFGIKGSDRIDLKRILKELEAEGHLEKRKKTY
RDPDRLPPVSVLQIKAPDGDGDLFARPLEWHGEGVEPVVLVMPRASDPALGEGDRILARL
TVVQDADYHYEARLIRRVGTNPRRVIGIFRKGDEGGRIVPIEKSASTEWSVADNATHGAR
DGELVEAEQAGPKSRLGLPRARVVERLGDPSAPKAVSLIAIHQHGIPDHFPDDVIAEADA
AKPMGLKGREDLRDMPLITIDPADARDHDDACYAHADDDPANPGGHVIWVAIADVAAYVR
SGTALDREARKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRPCIAVRMQIDPEGNKIG
HRFVRALMRSAASLHYAEVQEAMDGAPNDRTGPFLEPVIKPLYAAYAALVKARAERQPLD
LDLPERKIVLDDSGRVASVNFRDRLDAHKLIEEFMILANVAAAEVLVKKRTPLLFRVHEE
PAPEKLEALRETARAAGLALAKGQVLQTRHLNALLNGAAGTDDAELINISTLRSMQQAYY
NVENFGHFGLALRNYAHFTSPIRRYADLIVHRALVSAHGWGDDGLDAVEIERLEQTATHI
SETERRSMMAERDTTDRYLAAYLSERVGSEFAGRISGVARFGAFVKLDETGADGLVPVRS
IGREFFHFDAEAGTLMGSDTGLIIAVGQRVNVRLAQATPVTGGLELELLSIEDKPMPAGG
GGGRRSPAGRSVSRKSAKAKAKRSKIKRKVERKRRS
NT seq 2271 nt   +upstreamnt  +downstreamnt
atgacccgtattccttccaaggccgaaatcctcgagtggatcgcagcccatccgacccac
aactccaaacgtgacatcgccaaggccttcggcatcaagggatctgacaggattgacctg
aaacggattctgaaagagctggaagccgaggggcacctggaaaaacgcaagaagacctat
cgcgatcctgatcgcctgccgcctgtttcggtcttgcagatcaaggccccggatggcgac
ggtgatctttttgcgcggccacttgaatggcatggcgaaggcgtggaaccggtggttttg
gtgatgccgcgcgcctctgaccctgcgctgggcgaaggcgaccgaattctggcacggctg
acggtagtgcaggatgcagattatcattacgaagcacggctgatccgtcgggttggaacc
aacccacgccgagtgattggtatcttccgtaagggtgacgagggcgggcgtattgttccg
atagaaaagtcggcctcaaccgaatggagtgtcgcggacaatgccacccatggtgcgcgt
gacggcgagctggtcgaggccgaacaagcgggaccgaaatcccgccttggcctgccgcgc
gcccgtgtcgttgagcgtctgggtgacccgtcggcccccaaggcggtgtcgctgattgcg
attcatcagcatggtattcctgaccatttccccgatgatgttatcgcagaggctgacgcg
gccaaacctatgggcctgaaggggcgcgaagatctgcgggatatgccgctgatcaccatc
gacccggcagatgcgcgtgaccatgatgacgcctgttatgcccatgccgatgatgatccg
gcgaaccccggtggtcatgtcatctgggtcgcgattgccgatgtcgccgcctatgtgcgc
tctggcacggcactggaccgcgaggcgcgtaagcgtggcaactccagctatttccccgac
cgtgtggtcccgatgctgccggaccgcctgtcaggtgatctctgttcgctgcatgaaggt
gtgccacggccctgtatcgctgtgcgaatgcagattgaccccgagggcaataaaattggc
caccgttttgtgcgcgcgctgatgcgctctgccgcttcgttgcactacgccgaggtgcaa
gaggcgatggatggtgcccccaatgatcggactggcccgtttctggagccagtgatcaag
ccgctgtacgcggcctatgcggcgctggtcaaagcccgcgccgagcgtcaaccactggac
ctggatctgcccgaacgcaaaatcgtgttagatgacagcggtcgggtggcctcggtgaat
ttccgcgaccgtctggacgctcataagttgatcgaggaatttatgatcctcgccaatgtt
gcggcggcagaggtactggtgaaaaaacggacgccgctgttgtttcgcgtccacgaagaa
cctgcgccggaaaaactggaagctctgcgagagacggcccgtgcagcgggtctggcgctg
gccaaggggcaggtgttgcagacacgacatctgaatgcgctcttgaacggcgcagctggt
acagatgatgccgagctgatcaatatctcgactctgcggtcgatgcagcaggcctattac
aacgtcgagaactttggtcactttggtttggcgttgcgcaactatgcgcatttcacatcc
cccatccgacgctacgctgacctgatcgtacatcgcgcgctggtctcggcccacggctgg
ggggacgacggactggatgcggttgagattgagcggttagagcagacggccacccatatc
tcggaaaccgaacgacggtcgatgatggctgagcgggacaccacagatcggtatcttgct
gcctatctatcagagcgtgtagggagtgaattcgcaggccgcatcagcggggtcgcgcgg
tttggtgcctttgtgaagctggacgaaactggcgctgacggtttggtgcctgtgcgttcc
atcgggcgcgagttctttcacttcgatgccgaggccggtacgctgatgggatccgacacc
ggattgatcattgccgtcggtcagcgcgtcaacgtgcgcttggcccaggccacacctgtt
accggggggcttgaactggagttgctgtcgattgaggacaagccgatgcctgcgggtggc
ggtggagggcggcgcagccccgcgggccgatcagtgagccgaaaatcggccaaggccaag
gcaaaacgcagcaaaatcaaacgcaaggttgagcgtaagcgtcgcagttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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