KEGG   Paraburkholderia hospita: C2L64_50255
Entry
C2L64_50255       CDS       T05305                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
phs  Paraburkholderia hospita
Pathway
phs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:phs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C2L64_50255
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phs03019]
    C2L64_50255
   03400 DNA repair and recombination proteins [BR:phs03400]
    C2L64_50255
Enzymes [BR:phs01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     C2L64_50255
Messenger RNA biogenesis [BR:phs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     C2L64_50255
DNA repair and recombination proteins [BR:phs03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      C2L64_50255
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind ResIII HTH_20 SWI2_SNF2 SecA_DEAD
Other DBs
NCBI-ProteinID: AUT76753
UniProt: A0A2D0A194
Position
5:complement(306285..308084)
AA seq 599 aa
MPASTETSTKAMHRTLREVFGFESLRPGQREIIDSVMQGRDTLAIMPTGAGKSLCYQLPA
MHLSGLTLVVSPLIALIKDQRDKLLAADVEAMQINSTLSAAEERQTYEKLNTAARAIVFV
TPEQLAKPTLLEALHGHRGPCAQPRVSLIVVDEAHCIAQWGHDFRPAFLQIADAVRSLGG
PPVLALTATATTAVVDDIVRTLGMREPHVLHTGVYRPNLRYSVMQVSVAGATGRASTRSA
QAKLAAVRALLESRSDAGIIYTATVREAERLATAVREWGVPAALYHGRIGSRERHDAQDR
FMRGDVRVMIATNAFGMGIDKADIRFVVHDQMPGSIDAYYQETGRAGRDREAADCILLFD
LNDRRVQQFLQLGRYPERELVERVREALGKHDNATAPGISTDELARTLADIGRNKLLVAL
KILLDAGLVRRNRARRYLCRDGMPGSDAFAAALQRYDELAKRDREALQQMIDYAQTGGCR
WHTILEHFGYAGEVDRCGTCDNCRNPPHVEPFREPVKAIAPAQDGMMNAASGTRDRRHGF
TRGQCVRVRKYGTGQVTFATTDQVAVLFPDGTTRTFLARFVKAVEAGHGVPHQPAQFSG
NT seq 1800 nt   +upstreamnt  +downstreamnt
atgccagcttcaacagaaacgagcacgaaggccatgcaccggacgctacgcgaggtgttc
ggtttcgaatcgctgcgtccgggacaacgcgagattatcgacagcgtgatgcagggacgc
gacacgctcgccatcatgccgacgggcgctggcaaatcgctgtgctaccagctgcccgcc
atgcatctgagcggcctgaccctcgtcgtatcgccattgatcgcattgataaaggatcaa
cgcgacaagctgctcgccgctgacgtggaggcgatgcagatcaacagcacactgagcgcc
gccgaggaacggcagacgtatgaaaagctgaacaccgcagcgcgcgcgattgtgttcgtg
acacccgagcaactcgccaaaccgacactgctggaagcgcttcacgggcatcgcggcccg
tgcgcgcagccacgcgtgagtctgattgttgtcgacgaagctcactgcattgcgcagtgg
ggacatgacttcaggccggccttcctgcagatcgccgatgcggtgcgcagccttggaggt
ccgcccgtcctcgcgctcacagctacggcgacgacggctgtcgtcgacgatatcgtgcgc
acgctcggcatgcgcgagccgcacgtgctgcacacaggcgtctatcggccgaatctgcgg
tacagcgtcatgcaggtgtcggtggcgggcgcgacaggacgtgcatccacgcgttccgcg
caggcgaagctcgccgcggttcgcgcgttgctcgagtcgcgcagcgatgccgggatcatc
tacacggcgacggtacgcgaagcggaacggctggcgacagcggtccgcgaatggggcgtg
ccggctgccctttatcacggccgaatcggttcccgcgagcggcatgatgcacaggaccgc
ttcatgcgcggcgacgtgcgtgtgatgatcgcgaccaacgcgttcggcatgggcatcgac
aaggccgacatacgtttcgtcgtgcatgaccagatgccgggcagtatcgacgcgtactat
caggagaccgggcgcgcgggtcgcgaccgcgaagctgcggattgcatcctgctgttcgat
ctgaacgacaggcgtgtccagcagttcctgcagcttggccgctatccggagcgcgaactc
gtcgagcgcgtgcgcgaggcgctgggcaagcacgacaacgcgaccgcgccgggcatcagc
acggacgaactcgcgcgcacactcgcggacatcgggcgcaacaaactcctggtcgcgttg
aaaattctgctcgacgcagggcttgtgcgtcgcaatcgcgcgcgccgctatctgtgccgc
gacggcatgccgggcagcgatgcgtttgccgcagcgctgcaacggtacgacgaactggcg
aagcgcgatcgcgaggcacttcaacaaatgatcgactatgcgcaaacgggcggttgccgc
tggcacaccattctcgagcatttcggctatgccggcgaggtcgatcggtgcggcacatgc
gacaactgccggaatccgccgcacgtcgaaccattccgggagcccgtgaaggcaatagcg
ccggctcaagacgggatgatgaatgccgcatccggcacgcgcgaccggcgacacggtttt
acgcgcggccagtgcgtgcgggtgcgcaagtacgggacgggccaggtgacgttcgcgacg
acagaccaggtggctgtgctgtttcctgacggaaccacgcgcacctttctcgcccggttc
gtcaaggccgttgaagccgggcacggcgtcccgcatcagccagcgcagttttccggctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system