KEGG   Pediculus humanus corporis (human body louse): Phum_PHUM545510
Entry
Phum_PHUM545510   CDS       T01223                                 
Name
(RefSeq) hypothetical protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
phu  Pediculus humanus corporis (human body louse)
Brite
KEGG Orthology (KO) [BR:phu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:phu03016]
    Phum_PHUM545510
Enzymes [BR:phu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     Phum_PHUM545510
Transfer RNA biogenesis [BR:phu03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    Phum_PHUM545510
 Prokaryotic type
   tRNA splicing ligases
    Phum_PHUM545510
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-GeneID: 8240356
NCBI-ProteinID: XP_002431746
VectorBase: PHUM545510
UniProt: E0W052
AA seq 510 aa
MQQIMVVRQYNEELNYLEKISPYSWRIKIGFQPNMKVEGVFYVNNHLEKLMLDELKNACR
PGMVGGFLPGVKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDMSDPKSVVSPGG
VGFDINCGVRLLRTNLMEKDILPVKEQLTQSLFDHIPVGVGSKGIIPMNARDLEEALEMG
MDWSLREGYVWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVD
EIYDKWAASKMGIESKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLAC
ARINSPEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNSCPDDLDMHVIYDVSHNI
AKIEEHIVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGT
QQGMLETFGSTCHGAGRALSRAKSRRNLDYQQVLNKLSDMGISIRVASPKLVMEEAPESY
KNVTDVVNTCHDAGISKKCIKLRPIAVIKG
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgcaacaaattatggtagtaaggcaatataatgaagaacttaattacctggaaaaaatt
agcccttacagttggcgaatcaaaattggctttcaaccaaacatgaaagtggaaggagtt
ttttacgtgaataatcacttagaaaaattaatgttagatgaactgaaaaatgcttgtcga
cctggaatggtgggtggatttttgcctggtgtcaaacaaatagcaaatgttgcggcatta
ccaggcattgttgggaaatcagtgggactacctgatgttcactccgggtatggttttgcc
ataggtaatatggcagcatttgacatgtcagatccaaaatcggtggtctctcctggagga
gtaggttttgatattaattgcggtgtaagactgttaagaaccaacctcatggaaaaagat
atacttcctgttaaagaacaactaacgcaaagtcttttcgatcatataccagttggagta
ggatcaaaaggtatcattccaatgaatgcgagagatttagaagaggctcttgaaatggga
atggattggtctctcagagaaggctacgtttgggcagaagacaaagaacattgtgaagaa
tatggtagaatgttaaatgcagatccttctaaagttagcatgagggccaaaaaaagagga
ttacctcagttaggaactttaggagctggaaatcattatgctgaaattcaagtggttgat
gaaatttatgataaatgggctgcaagcaaaatgggtatcgaatcaaaagggcaaatttgt
gttatgattcattctggtagtaggggttttggacaccaggtagcaaccgatgccctggtt
caaatggaaaaagcaatgaaaagggacaatattgaaaccaatgataggcagttggcttgt
gctagaattaattctcccgaagggcaggattatttaaaaagcatggcagcagccgctaac
tttgcatgggtcaatagaagctcaatgacatttttatgtagacaggcctttgccaagcaa
tttaattcatgtccagatgatttagatatgcatgttatatatgatgtatctcataatatt
gccaaaattgaagagcacatagtggatggaaaacaaaaaactttgttggtgcacagaaag
ggttcaactagagctttccctccacatcaccctttaattccagttgattaccaattgact
ggtcaacctgtgttaatcggtggcacaatgggaacatgtagttatgttttaacaggcaca
caacagggaatgctagagacttttggttcgacttgtcatggagctgggagagctctgtcg
agagcaaaatcaagaagaaacttagactatcaacaagttttaaataaattatcagacatg
ggaatatccattcgagttgcttcacccaaactagtcatggaagaagctccagaatcatac
aaaaatgtaacagatgttgtaaatacctgtcacgatgctggaatcagtaaaaaatgcata
aaacttcgtccaatagctgttatcaagggttag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (88)   
   KEGG ORTHOLOGY (1)   
   RefGene (83)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   VECTORBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (97)   

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