KEGG   Pseudoalteromonas issachenkonii: PI2015_1091
Entry
PI2015_1091       CDS       T04164                                 
Name
(GenBank) ATP-dependent RNA helicase RhlE
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
pia  Pseudoalteromonas issachenkonii
Pathway
pia03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pia00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PI2015_1091
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pia03019]
    PI2015_1091
Messenger RNA biogenesis [BR:pia03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PI2015_1091
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 CMS1
Other DBs
NCBI-ProteinID: ALQ54400
Position
I:1194921..1196318
AA seq 465 aa
MSFDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLI
ERLSSGTKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRL
RKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQ
NLMFSATFSDDIRALAKELINDPVEISVAAKNTTAKSVTQCVYAVDKARKTALLSHLIRS
NNWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVLVAT
DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYGIER
FIGELIPRAEEEGFEPANPVAERALDARPLPAKKPKKKQPFNKPKSDSSKPNSKKPNNGG
NGTGPRRGGSKKPAAKTDENAQNPWAKRQSVGGTGQRRRRPANND
NT seq 1398 nt   +upstreamnt  +downstreamnt
atgagttttgatggtttaggtttatcacagtctttagttaatgcggttttagaaaagggc
tatgaaacgccaacgcctattcaggctcaagctatcccagcaattattgcgcgtcgcgat
gtaatggccgcagcacaaacaggtaccggtaaaaccgctggttttactttgccactaatt
gagcgtttatcgtcgggcactaaagcaaaaagtaatcatgtacgtgcgcttattttaacg
ccaacccgagagcttgcgttgcaagtaagcgaaaacgttgaagaatacgctaagcattct
gatgtgagttcgtttgtggtttacggtggtgtaaaaattaacccacaaatgcagcgcctg
cgtaaaggggttgatattttagtggccacacctgggcgcttaattgatttacacaatcaa
aacgcggttaaatttgatagcgttgaagtactggttttagatgaagccgaccgtatgtta
gacatgggctttatccacgacattaaacgcttaattgcaaaaatgcctgaaaaacgtcaa
aacttaatgttctcagcaaccttttctgacgacattcgtgcattggccaaagagttaatt
aacgatccggttgaaatttcagtcgctgccaaaaacacgactgctaaaagcgtgactcaa
tgcgtgtacgcagtagataaagcgcgtaaaacggccttattaagccatttaattcgtagc
aacaattggcaacaagtactggtatttagccgtactaaacacggtgctaaccgtttagtt
aagcaactggaacgtgatgatattgttggcgcagcaatccatggtaataaatctcagggc
gcacgtgttaaagcattggaaggctttaaaagtggtgaagtgcgcgtattagtggcaacc
gatattgttgcccgtggtttagatattgttgagcttccacacgtagttaactacgactta
cctaatgtatatgaagattatgttcaccgtattggccgaactggtcgtgcgggtgcatca
gggcatgccatttcgtttgtaacggtcgacgatgcagtggatttatacggtattgaacgc
tttattggcgagttaattcctcgtgctgaagaagaaggctttgaaccggctaaccctgtt
gctgagcgcgccctcgatgctcgcccactgcctgctaaaaagccaaagaaaaaacaacca
tttaataagcctaaatctgatagcagcaaacctaatagcaaaaagcctaacaatggtggc
aatggtacaggcccacgtcgtggtggctctaaaaagccagcagcaaaaacagacgagaat
gcacaaaacccttgggcaaagcgtcaatcggtagggggcactggtcagcgccgtcgtcgt
ccagcaaataacgactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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